cluster # 7859

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Anopheles gambiae
cluster # 7859 cluster # 7859 Sequences # 8 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7859#0 length = 826 sequences # 2

consensus_7859#1 length = 413 sequences # 5
consensus_7859#2 length = 66 sequences # 1

consensusID : consensus_7859#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 826
fasta sequence

                              [CCGCGGACGCGTGGGCGGACGCGTGGGCGGACGCATTCCTGACCCCATGGCCGGCGCGCCATCGAAATCGACAACCGAAATTCATCTCCATCACGAATCAGTGCGGTTACGGCCGCGGTTCGGTGAAATGAAGCGCCGGGCTGCACGCCCGTGTTCGAAGTGTGTCGGTCGGAAGACGATCTATTGAAACGAATGCGATCACCCTGAAAATCAACAGCGACCACGTGAGGCCCACATGAAGAAAAGCCAACAGCGACACGTGGAGTTCCCTGAACCCT-CCATATGCAAAAGAAGAAAACACAAAAGCATAAAGAGCGAAAATCAATCCCACTCGGAAGAAGATGAAGAACAAAAGATGCAAAACAAAAAGAAAACATTCACGCTAAGCAAAAGCAACTACAACAACGGCTTTGCACAATTCAATTGAAAAACAATCCGTTTTATATATCCGCTGTACTGCGAGTTGGTGACGACGAAGGTGGTGTGGGACATTTGAACCAAAGAGATCGATACTAAGAAGAACCCAAGGAAAACCATGAAAAACTAAACAAACGGAATACTTAGACATTAATGAACATCAAAACAGAAATGATAATGATTTGCAAATAGTGTTTATACAGAGTTTTTACTTCAAACCTATCCCATATTTGCTTTTGTACACCACCAACCAACGTTCAGTTTTAAATTATCCGTCGAACAAAAGAACAAAAGAACAAAAGAACAAAAGAACAAAAGAACAAAAGAACAAAAGAACAAAAGAACAAAAGAACAAAAGAACAAAAGAACAAAAGAACAAAAGAACAAAAGAACAAAAGAACAAAAGCGG]

[+] EMBL BM579810             [CCGCGGACGCGTGGGCGGACGCGTGGGCGGACGCATTCCTGACCCCATGGCCGGCGCGCCATCGAAATCGACAACCGAAATTCATCTCCATCACGAATCAGTGCGGTTACGGCCGCGGTTCGGTGAAATGAAGCGCCGGGCTGCACGCCCGTGTTCGAAGTGTGTCGGTCGGAAGACGATCTATTGAAACGAATGCGATCACCCTGAAAATCAACAGCGACCACGTGAGGCCCACATGAAGAAAAGCCAACAGCGACACGTGGAGTTCCCTGAACCCT CCATATGCAAAAGAAGAAAACACAAAAGCATAAAGAGCGAAAATCAATCCCACTCGGAAGAAGATGAAGAACAAAAGATGCAAAACAAAAAGAAAACATTCACGCTAAGCAAAAGCAACTACAACAACGGCTTTGCACAATTCAATTGAAAAACAATCCGTTTTATATATCCGCTGTACTGCGAGTTGGTGACGACGAAGGTGGTGTGGGACATTTGAACCAAAGAGATCGATACTAAGAAGAACCCAAGGAAAACCATGAAAAACTAAACAAACGGAATACTTAGACATTAATGAACATCAAAACAGAAATGATAATGATTTGCAAATAGTGTTTATACAGAGTTTTTACTTCAAACCTATCCCATATTTGCTTTTGTACACCACCAACCAACGTTCAGTTTTAAATTATCCGTCGAAC                                                                                                                                ]
[-] EMBL BM654829             [                                                                                                                                                                                                       CACCCTGAAAATCAACAGCGACCACGTGAGGCCCACATGAAGAAAAGCCAACAGCGACACGTGGAGTTCCCTGAACCCTCCCATATGCAAAAGAAGAAAACACAAAAGCATAAAGAGCGAAAATCAATCCCACTCGGAAGAAGATGAAGAACAAAAGATGCAAAACAAAAAGAAAACATTCACGCTAAGCAAAAGCAACTACAACAACGGCTTTGCACAATTCAATTGAAAAACAATCCGTTTTATATATCCGCTGTACTGCGAGTTGGTGACGACGAAGGTGGTGTGGGACATTTGAACCAAAGAGATCGATACTAAGAAGAACCCAAGGAAAACCATGAAAAACTAAACAAACGGAATACTTAGACATTAATGAACATCAAAACAGAAATGATAATGATTTGCAAATAGTGTTTATACAGAGTTTTTACTTCAAACCTATCCCATATTTGCTTTTGTACACCACCAACCAACGTTCAGTTTTAAATTATCCGTCGAACAAAAGAACAAAAGAACAAAAGAACAAAAGAACAAAAGAACAAAAGAACAAAAGAACAAAAGAACAAAAGAACAAAAGAACAAAAGAACAAAAGAACAAAAGAACAAAAGAACAAAAGAACAAAAGCGG]




>consensus_7859#0
CCGCGGACGCGTGGGCGGACGCGTGGGCGGACGCATTCCTGACCCCATGGCCGGCGCGCC
ATCGAAATCGACAACCGAAATTCATCTCCATCACGAATCAGTGCGGTTACGGCCGCGGTT
CGGTGAAATGAAGCGCCGGGCTGCACGCCCGTGTTCGAAGTGTGTCGGTCGGAAGACGAT
CTATTGAAACGAATGCGATCACCCTGAAAATCAACAGCGACCACGTGAGGCCCACATGAA
GAAAAGCCAACAGCGACACGTGGAGTTCCCTGAACCCTCCATATGCAAAAGAAGAAAACA
CAAAAGCATAAAGAGCGAAAATCAATCCCACTCGGAAGAAGATGAAGAACAAAAGATGCA
AAACAAAAAGAAAACATTCACGCTAAGCAAAAGCAACTACAACAACGGCTTTGCACAATT
CAATTGAAAAACAATCCGTTTTATATATCCGCTGTACTGCGAGTTGGTGACGACGAAGGT
GGTGTGGGACATTTGAACCAAAGAGATCGATACTAAGAAGAACCCAAGGAAAACCATGAA
AAACTAAACAAACGGAATACTTAGACATTAATGAACATCAAAACAGAAATGATAATGATT
TGCAAATAGTGTTTATACAGAGTTTTTACTTCAAACCTATCCCATATTTGCTTTTGTACA
CCACCAACCAACGTTCAGTTTTAAATTATCCGTCGAACAAAAGAACAAAAGAACAAAAGA
ACAAAAGAACAAAAGAACAAAAGAACAAAAGAACAAAAGAACAAAAGAACAAAAGAACAA
AAGAACAAAAGAACAAAAGAACAAAAGAACAAAAGAACAAAAGCGG

consensusID : consensus_7859#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 413
fasta sequence

                              [CCGCGGACGCGTGGGCGGACGCGTGGGGCTTGAGAATTGAGGATTTCCTTGAGCGCCGTCTGCAGACCCAGGTGTTCAAGCTGGGATTGGCCAAGTCGTACCATCACGCTCGCGTTCTGATCCGCCAGCGTCACATTCGTGTCCGCAAGCAGGTCGTGAACGTTCCTTCGTTCATCGTCCGTCTGGATTCGCAGAAGCACATCGACTTCTCGCTGAAGTCGCCCTTCGGTGGTGGCCGTCCGGGTCGCGTCAAGAGGAAGAACCTGAAGAAGGGCCAGGGTGGCGGCGGTGCTGCCGAAGAGGAGGAAGAGGATTAAACTGCTGGTCGCGGTTGGTTGTCTAAACCCTAAACATTCTGTCACTCAGCTAGATGTAATAATAACAACAAGCATTACATGAGTGTCACCAACACG]

[+] EMBL BM623908             [CCGCGGACGCGTGGGCGGACGCGTGGGGCTTGAGAATTGAGGATTTCCTTGAGCGCCGTCTGCAGACCCAGGTGTTCAAGCTGGGATTGGCCAAGTCGTACCATCACGCTCGCGTTCTGATCCGCCAGCGTCACATTCGTGTCCGCAAGCAGGTTGTGAACGTTCCTTCGTTCATCGTCCGTCTGGATTCGCAGAAGCACATCGACTTCTCGCTGAAGTCGCCCTTCGGTGGTGGCCGTCCGGGTCGCGTCAAGAGGAAGAACCTGAAGAAGGGCCAGGGTGGCGGCGGTGCTGCCGAAGAGGAGGAAGAGGATTAAACTGCTGGTCGCGGTTGGTTGTCTAAACCCTAAACATTCTGTCACTCAGCTAGATGTAATAATAACAACAAGCATTACATGAGTGTCAC       ]
[+] EMBL BM587350             [                                   ccgGAGGATTTCCTTGAGCGCCGTCTGCAGACCCAGGTGTTCAAGCTGGGATTGGCCAAGTCGTACCATCACGCTCGCGTTCTGATCCGCCAGCGTCACATTCGTGTCCGCAAGCAGGTCGTGAACGTTCCTTCGTTCATCGTCCGTCTGGATTCGCAGAAGCACATCGACTTCTCGCTGAAGTCGCCCTTCGGTGGTGGCCGTCCGGGTCGCGTCAAGAGGAAGAACCTGAAGAAGGGCCAGGGTGGCGGCGGTGCTGCCGAAGAGGAGGAAGAGGATTAAACTGCTGGTCGCGGTTGGTTGTCTAAACCCTAAACATTCTGTCACTCAGCTAGATGTAATAATAACAACAAGCATTACATGAGTGTCACC      ]
[+] EMBL BM609964             [                                                                                                                                       ccgGTGTCCGCAAGCAGGTCGTGAACGTTCCTTCGTTCATCGTCCGTCTGGATTCGCAGAAGCACATCTACTTCTCGCTGAAGTCGCCCTTCGGTGGTGGCCGTCCGGGTCGCGTCAAGAGGAAGAACCTGAAGAAGGGCCAGGGTGGCGGCGGTGCTGCCGAAGAGGAGGAAGAGGAT                                                                                                   ]
[+] EMBL BM579768             [                                                                                                                                                                                              ccgGAAGCACATCGACTTCTCGCTGAAGTCGCCCTTCGGTGGTGGCCGTCCAGGTCGCGTCAAGAGGAAGAACCTGAAGAAGGGCCAGGGTGGCGGCGGCGCTGCCGAAGAGGAGGAAGAGGATTAAACTGCTGGTCGCGGTTGGTTGTCTAAACCCTAAACTTTCTGTCACTCAGCTAGATGTAATAATAACAACAAGCATTAAATGAGTGTCACCAACACG]
[+] EMBL BM614629             [                                                                                                                                                                                                       ccgCGACTTCTCGCTGAAGTCGCCCTTCGGTGGTGGCCGTCCGGGTCGCGTCAAGAGGAAGAACCTGAAGAAGGGCCAGGGTGGCGGCGGTGCTGCCGAAGAGGAGGAAGAGGATTAAACTGCTGGTCGCGGTTGGTTGTCTAAACCCTAAACATTCTGTCACTCAGCTAGATGTAATAATAACAACAAGCATTACATGAGTGTCACC      ]




>consensus_7859#1
CCGCGGACGCGTGGGCGGACGCGTGGGGCTTGAGAATTGAGGATTTCCTTGAGCGCCGTC
TGCAGACCCAGGTGTTCAAGCTGGGATTGGCCAAGTCGTACCATCACGCTCGCGTTCTGA
TCCGCCAGCGTCACATTCGTGTCCGCAAGCAGGTCGTGAACGTTCCTTCGTTCATCGTCC
GTCTGGATTCGCAGAAGCACATCGACTTCTCGCTGAAGTCGCCCTTCGGTGGTGGCCGTC
CGGGTCGCGTCAAGAGGAAGAACCTGAAGAAGGGCCAGGGTGGCGGCGGTGCTGCCGAAG
AGGAGGAAGAGGATTAAACTGCTGGTCGCGGTTGGTTGTCTAAACCCTAAACATTCTGTC
ACTCAGCTAGATGTAATAATAACAACAAGCATTACATGAGTGTCACCAACACG

consensusID : consensus_7859#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 66
fasta sequence

                              [GGTTTGCTGTTGGGTGGNNGTGGTGGCTGTGGCCAGAGCCGCCCCAATGGACGACGGAATGCAGCA]

[+] EMBL BX619410             [GGTTTGCTGTTGGGTGGNNGTGGTGGCTGTGGCCAGAGCCGCCCCAATGGACGACGGAATGCAGCA]




>consensus_7859#2
GGTTTGCTGTTGGGTGGNNGTGGTGGCTGTGGCCAGAGCCGCCCCAATGGACGACGGAAT
GCAGCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7859#0      CCGCGGACGCGTGGGCGGACGCGTGGGCGGACGCATTCCTGACCCCATGGCCGGCGCGCC 60
consensus_7859#2      ------------------------------------------------------------
consensus_7859#1      ------------------------------------------------------------
                                                                                  

consensus_7859#0      ATCGAAATCGACAACCGAAATTCATCTCCATCACGAATCAGTGCGGTTACGGCCGCGGTT 120
consensus_7859#2      ------------------------------------------------------------
consensus_7859#1      ------------------------------------------------------------
                                                                                  

consensus_7859#0      CGGTGAAATGAAGCGCCGGGCTGCACGCCCGTGTTCGAAGTGTGTCGGTCGGAAGACGAT 180
consensus_7859#2      ------------------------------------------------------------
consensus_7859#1      ------------------------------------------------------------
                                                                                  

consensus_7859#0      CTATTGAAACGAATGCGATCACCCTGAAAATCAACAGCGACCACGTGAGGCCCACATGAA 240
consensus_7859#2      ------------------------------------------------------------
consensus_7859#1      ------------------------------------------------------------
                                                                                  

consensus_7859#0      GAAAAGCCAACAGCGACACGTGGAGTTCCCTGAACCCTCCATATGCAAAAGAAGAAAACA 300
consensus_7859#2      ------------------------------------------------------------
consensus_7859#1      ------CCGCGGACGCGTGGGCGGACGCGTGGGGCTTGAGAATTGAGGATTTCCTTGAGC 54
                                                                                  

consensus_7859#0      CAAAAGCATAAAGAGCGAAAATCAATCCCACTCGGAAGAAGATGAAGAACAAAAGATGCA 360
consensus_7859#2      ------------------------------------------------------------
consensus_7859#1      GCCGTCTGCAGACCCAGGTGTTCAAGCTGGGATTGGCCAAGTCGTACCATCACGCTCGCG 114
                                                                                  

consensus_7859#0      AAACAAAAAGAAAACATTCACGCTAAGCAAAAGCAACTACAACAACGGCTTTGCACAATT 420
consensus_7859#2      ------------------------------------------------------------
consensus_7859#1      TTCTGATCCGCCAGCGTCACATTCGTGTCCGCAAGCAGGTCGTGAACGTTCCTTCGTTCA 174
                                                                                  

consensus_7859#0      CAATTGAAAAACAATCCGTTTTATATATCCGCTGTACTGCGAGTTGGTGAC--GACGAAG 478
consensus_7859#2      ------------------------------GGTTTGCTGTTGGGTGGNNGT--GGTGGCT 28
consensus_7859#1      TCGTCCGTCTGGATTCGCAGAAGCACATCGACTTCTCGCTGAAGTCGCCCTTCGGTGGTG 234
                                                      *   *       * *      *  *   

consensus_7859#0      GTGGTGTGGGACATTTGAACCAAAGAGATCGATACT-----AAGAAGAACCCAAGGAAAA 533
consensus_7859#2      GTGGCCAGAGCCGCCCCAATGGACGA---CGGAATG-----CAGCA-------------- 66
consensus_7859#1      GCCGTCCGGGTCGCGTCAAGAGGAAGAACCTGAAGAAGGGCCAGGGTGGCGGCGGTGCTG 294
                      *  *   * * *     **          *   *        **                

consensus_7859#0      CCATGAAAAACTAAACAAACGGAATACTTAGACATTAATGAACATCAAAACAGAAATGAT 593
consensus_7859#2      ------------------------------------------------------------
consensus_7859#1      CCGAAGAGGAGGAAGAGGATTAAACTGCTGGTCGCGGTTGGTTGTCTAAACCCTAAACAT 354
                                                                                  

consensus_7859#0      AATGATTTGCAAATAGTGTTTATACAGAGTTTTTACTTCAAACCTATCCCATATTTGCTT 653
consensus_7859#2      ------------------------------------------------------------
consensus_7859#1      TCTGTCACTCAGCTAGATGTAATAATAACAACAAGCATTACATGAGTGTCACCAACACG- 413
                                                                                  

consensus_7859#0      TTGTACACCACCAACCAACGTTCAGTTTTAAATTATCCGTCGAACAAAAGAACAAAAGAA 713
consensus_7859#2      ------------------------------------------------------------
consensus_7859#1      ------------------------------------------------------------
                                                                                  

consensus_7859#0      CAAAAGAACAAAAGAACAAAAGAACAAAAGAACAAAAGAACAAAAGAACAAAAGAACAAA 773
consensus_7859#2      ------------------------------------------------------------
consensus_7859#1      ------------------------------------------------------------
                                                                                  

consensus_7859#0      AGAACAAAAGAACAAAAGAACAAAAGAACAAAAGAACAAAAGAACAAAAGCGG 826
consensus_7859#2      -----------------------------------------------------
consensus_7859#1      -----------------------------------------------------