cluster # 7876

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Anopheles gambiae
cluster # 7876 cluster # 7876 Sequences # 8 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7876#0 length = 752 sequences # 4

consensus_7876#1 length = 726 sequences # 4

consensusID : consensus_7876#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 752
fasta sequence

                              [CATGACAGCAAACTCTTTAGAGAGGGTGTAGTGTTGTTGCAAGGGAAAGAATAGAGATCGTTATCGAAGTCGATAAATAAAAGGGAAACATGCTACTAAATACATAGCAAAATGCAACAAAAAAAACACAGCTGAACCTAATCAACATAAAGCTAAACACAAGTTGTGTGAGTAAAAACACAAAAACAAACACAAAGAAAACAAAACACACGCAAAACATAAGATAACGAATAAAGAGAAATGTGCGTAAAAATTAACAAGAAAGTGGGACAGAACATTAGGTCTATATAGAAGTACATATATATATATATTTAATACAGAGATATAGAGAAAGAGAGTCAACTTATAGAAAGAGAGAGTGAGAGAGAACAGGCAAAGGAAATGGGAAATAAAACTCCCTCTAAAAAAGTAATGTGTTAAAAAGAAAGAAATGTGTTAATAGAACGTGATAGGAGAATGAGCGTGTGTGTGTGTGAGTAAACGAGAGAGGGGTAGGAATGTGTTATAAAACGTAAAAATGTGAGCAAATGTGTAAGAGGTTAGTTGTAGTAGCTGTAAGAGAAAGCAGCAGTGTGTGGGTGCGCGATAAGAATCACCCACTTTCACTTTCACAGACACAGATACACACATTTTGCTCTAGTTTGCAAAGAATACACAAGTATAATAATACACAAGTAAAAGCAAAACTCACAAACACACACACACGCTCCCTTATTCATGCAAAACATCCAATCAAACCAACCACCCCTCCC]

[+] EMBL BX621945             [CATGACAGCAAACTCTTTAGAGAGGGTGTAGTGTTGTTGCAAGGGAAAGAATAGAGATCGTTATCGAAGTCGATAAATAAAAGGGAAACATGCTACTAAATACATAGCAAAATGCAACAAAAAAAACACAGCTGAACCTAATCAACATAAAGCTAAACACAAGTTGTGTGAGTAAAAACACAAAAACAAACACAAAGAAAACAAAACACACGCAAAACATAAGATAACGAATAAAGAGAAATGTGCGTAAAAATTAACAAGAAAGTGGGACAGAACATTAGGTCTATATAGAAGTACATATATATATATATTTAATACAGAGATATAGAGAAAGAGAGTCAACTTATAGAAAGAGAGAGTGAGAGAGAACAGGCAAAGGAAATGGGAAATAAAACTCCCTCTAAAAAAGTAATGTGTTAAAAAGAAAGAAATGTGTTAATAGAACGTGATAGGAGAATGAGCGTGTGTGTGTGTGAGTAAACGAGAGAGGGGTAGGAATGTGTTATAAAACGTAAAAATGTGAGCAAATGTGTAAGAGGTTAGTTGTAGTAGCTGTAAGAGAAAGCAGCAGTGTGTGGGTGCGCGATAAGAATCACCCACTTTCACTTTCACAGACACAGATACACACATTTTGCT                                                                                                                    ]
[+] EMBL BX612961             [                                                                                                                                      AACCTAATCAACATAAAGCTAAACACAAGTTGTGTGAGTAAAAACACAAAAACAAACACAAAGAAAACAAAACACACGCAAAACATAAGATAACGAATAAAGAGAAATGTGCGTAAAAATTAACAAGAAAGTGGGACAGAACATTAGGTCTATATAGAAGTACATATATATATATATTTAATACAGAGATATAGAGAAAGAGAGTCAACTTATAGAAAGAGAGAGTGAGAGAGAACAGGCAAAGGAAATGGGAAATAAAACTCCCTCTAAAAAAGTAATGTGTTAAAAAGAAAGAAATGTGTTAATAGAACGTGATAGGAGAATGAGCGTGTGTGTGTGTGAGTAAACGAGAGAGGGGTAGGAATGTGTTATAAAACGTAAAAATGTGAGCAAATGTGTAAGAGGTTAGTTGTAGTAGCTGTAAGAGAAAGCAGCAGTGTGTGGGTGCGCGATAAGAATCACCCACTTTCACTTTCACAGACACAGATACACACATTTTGCTCTAGTTTGCAAAGAATACACAAGTATAATAATACACAAGTAAAAGCAAAA                                                                  ]
[+] EMBL BX608390             [                                                                                                                                            ATCAACATAAAGCTAAACACAAGTTGTGTGAGTAAAAACACAAAAACAAACACAAAGAAAACAAAACACACGCAAAACATAAGATAACGAATAAAGAGAAATGTGCGTAAAAATTAACAAGAAAGTGGGACAGAACATTAGGTCTATATAGAAGTACATATATATATATATTTAATACAGAGATATAGAGAAAGAGAGTCAACTTATAGAAAGAGAGAGTGAGAGAGAACAGGCAAAGGAAATGGGAAATAAAACTCCCTCTAAAAAAGTAATGTGTTAAAAAGAAAGAAATGTGTTAATAGAACGTGATAGGAGAATGAGCGTGTGTGTGTGTGAGTAAACGAGAGAGGGGTAGGAATGTGTTATAAAACGTAAAAATGTGAGCAAATGTGTAAGAGGTTAGTTGTAGTAGCTGTAAGAGAAAGCAGCAGTGTGTGGGTGCGCGATAAGAATCACCCACTTTCACTTTCACAGACACAGATACACACATTTTGCTCTAGTTTGCAAAGAATACACAAGTATAATAATACACAAGTAAAAGCAAAACTCACAAACACACACACACGCTCCCTTATTCATGCAAAACATCCAATCAAACCAACCACCCCTCCC]
[+] EMBL BX622709             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TGTAAGAGGTTANTTGTANTAGCTGTAAGAGAAAGCANCAGTGTGTGGGTGCGCGATAAGAATCACCCACTTTCACTTTCACAGACACAGATACACACATTTTGCTCTAGTTTGCAAAGAATACACAAGTGTAATAATACNCAAGTAAAAGCAAAACTCACAAACACACACNCACGCTCCCTTATTCA                                  ]




>consensus_7876#0
CATGACAGCAAACTCTTTAGAGAGGGTGTAGTGTTGTTGCAAGGGAAAGAATAGAGATCG
TTATCGAAGTCGATAAATAAAAGGGAAACATGCTACTAAATACATAGCAAAATGCAACAA
AAAAAACACAGCTGAACCTAATCAACATAAAGCTAAACACAAGTTGTGTGAGTAAAAACA
CAAAAACAAACACAAAGAAAACAAAACACACGCAAAACATAAGATAACGAATAAAGAGAA
ATGTGCGTAAAAATTAACAAGAAAGTGGGACAGAACATTAGGTCTATATAGAAGTACATA
TATATATATATTTAATACAGAGATATAGAGAAAGAGAGTCAACTTATAGAAAGAGAGAGT
GAGAGAGAACAGGCAAAGGAAATGGGAAATAAAACTCCCTCTAAAAAAGTAATGTGTTAA
AAAGAAAGAAATGTGTTAATAGAACGTGATAGGAGAATGAGCGTGTGTGTGTGTGAGTAA
ACGAGAGAGGGGTAGGAATGTGTTATAAAACGTAAAAATGTGAGCAAATGTGTAAGAGGT
TAGTTGTAGTAGCTGTAAGAGAAAGCAGCAGTGTGTGGGTGCGCGATAAGAATCACCCAC
TTTCACTTTCACAGACACAGATACACACATTTTGCTCTAGTTTGCAAAGAATACACAAGT
ATAATAATACACAAGTAAAAGCAAAACTCACAAACACACACACACGCTCCCTTATTCATG
CAAAACATCCAATCAAACCAACCACCCCTCCC

consensusID : consensus_7876#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 726
fasta sequence

                              [CCGATAAATATATATATATATATATATATATATATATATATATTTAATACAGAGATATAGAGAAAGAGAGTCAACTTATAGAAAGAGAGAGTGAGAGAGAACAGGCAAAGAAAATGGGAAATAAAACCCCCTCTAAAAAAGGAATGTGTTAAAAAGAAAGAAATGTGTTAATAGAACGTGATAGGAGAATGAGCGTGTGTGTGTGTGAGTAAACGAGAGAGGGGTAGGAATGTGTTATAAAACGTAAAAATGTGAGCAAATGTGTAAGAGGTTAGTTGTAGTAGCTGTAAGAGAAAGCAGCAGTGTGTGGGTGCGCGATAAGAATCACCCACTTTCACTTTCACAGACACAGATACACACATTTTGCTCTAGTTTGCAAAGAATACACAAGTATAATAATACACAAGTAAAAGCAAAACTCACAAACACACACACACGCTCCCTTATTCATGCAAAACATCCAATCAAACCAACCACCCCTCCCCCCCCCCCCCATCCCATTAGGAAAAAGAAATGAAGATAGTTTAGTAGAGTGTGGAGCATGTACGAAGCACGAGGCAGATAAGAGTTACAGAAAGAGAAAAGAGAGAAGAGAAAAAGAAAAGAACAAAAAAAGTTTAAAGAAGC-AAAAAAAAACATTGATGCAAATACATAATCCTGCAAATTGTTGTTAAAAAAAAAAAAAAAAAGGGCGCCGCTCGCGCCCACGCGTCCGCGGACGCGTGG]

[+] EMBL BM653942             [CCGATAAATATATATATATATATATATATATATATATATATATTTAATACAGAGATATAGAGAAAGAGAGTCAACTTATAGAAAGAGAGAGTGAGAGAGAACAGGCAAAGAAAATGGGAAATAAAACCCCCTCTAAAAAAGGAATGTGTTAAAAAGAAAGAAATGTGTTAATAGAACGTGATAGGAGAATGAGC  GTGTGTGTGTGAGTAAACGAGAGAGGGGTAGGAATGTGTTATAAAACGTAAAAATGTGAGCAAATGTGTAAGAGGTTAGTTGTAGTAGCTGTAAGAGAAAGCAGCAGTGTGTGGGTGCGCGATAAGAATCACCCACTTTCACTTTCACATACACAGATACACACATTTTGCTCTAGTTTGCAAAGAATACACAAGTATAATAATACACAAGTAAAAGCAAAACTCACAAACACACACACACGCTCCCTTATTCATGCAAAACATCCA   AAACAAACCAACC  CCCCCCCTCCCCCATCCCATTAGGAAAAAGAAATGAAGATAGTTTAGTAGAGTGTGGAGCATGTACGAAGCACGAGGCAGATAAGAGTTACAGAAAGAGAAAAGAGAGAAGAGAAAAAGAAAAGAACAAAAAAAGTTTAAAGAAGCAAAAAAAAAACATTGATGCAAATAC                                                                           ]
[+] EMBL BX619045             [                                                                                              GAGAGAACAGGCAAAGGAAATGGGAAATAAAACTCCCTCTAAAAAAGTAATGTGTTAAAAAGAAAGAAATGTGTTAATAGAACGTGATAGGAGAATGAGCGTGTGTGTGTGTGAGTAAACGAGAGAGGGGTAGGAATGTGTTATAAAACGTAAAAATGTGAGCAAATGTGTAAGAGGTTAGTTGTAGTAGCTGTAAGAGAAAGCAGCAGTGTGTGGGTGCGCGATAAGAATCACCCACTTTCACTTTCACAGTCACAGATACACACATTTTGCTCTAGTTTGCAAAGAATACACAAGTATAATAATACACAAGTAAAAGCAAAACTCACAAACACACACACACGCTCCCTTATTCATGCAAAACATCCAATCAAACCAACCACCCCTCCCCCCCCCCCCCATCCCATTAGGAAAAAGAAATGAAGATAGTTTAGTAGAGTGTGGAGCATGTACGAAGCACGAGGCAGATAAGAGTTACAGAAAGAGAAAAGAGAGAAGAGAAAAAGAAAAGAACAAAAAAAGTTTAAAGAAGC AAAAAAAAACATTGAT                                                                                   ]
[+] EMBL BX622704             [                                                                                                                                                            AAAGAAATGTGTTAATAGAACGTGATAGGAGAATGAGCGTGTGTGTGTGTGAGTAAACGAGAGAGGGGTAGGAATGTGTTATAAAACGTAAAAATGTGAGCAAATGTGTAAGAGGTTAGTTGTAGTAGCTGTAAGAGAAAGCAGCAGTGTGTGGGTGCGCGATAAGAATCACCCACTTTCACTTTCACAGACACAGATACACACATTTTGCTCTAGTTTGCAAAGAATACACAAGTATAATAATACACAAGTAAAAGCAAAACTCACAAACACACACACACGCTCCCTTATTCATGCAAAACATCCAATCAAACCAACCACCCCTCCCCCCCCCCCCCATCCCATTAGGAAAAAGAAATGAAGATAGTTTAGTAGAGTGNGGAGCATGTACGAAGCACGAGGCAGATAAGAGTTACAGAAAGAGAAAAGAGAGAAGAGAAAAAG                                                                                                                               ]
[-] EMBL BM577612             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            AAGAAATGAAGATAGTTTAGTAGAGTGTGGAGCATGTACGAAGCACGAGGCAGATAAGAGTTCCAGAAAGAGAAAAGAGAGAAGAGAAAAAGAAAAGAACAAAAAAAGTTTAAAGAAGC  AAAACACCCATTGATGCAAATACATAATCCTGCAAATTGTTGTTAAAAAAAAAAAAAAAAAGGGCGCCGCTCGCGCCCACGCGTCCGCGGACGCGTGG]




>consensus_7876#1
CCGATAAATATATATATATATATATATATATATATATATATATTTAATACAGAGATATAG
AGAAAGAGAGTCAACTTATAGAAAGAGAGAGTGAGAGAGAACAGGCAAAGAAAATGGGAA
ATAAAACCCCCTCTAAAAAAGGAATGTGTTAAAAAGAAAGAAATGTGTTAATAGAACGTG
ATAGGAGAATGAGCGTGTGTGTGTGTGAGTAAACGAGAGAGGGGTAGGAATGTGTTATAA
AACGTAAAAATGTGAGCAAATGTGTAAGAGGTTAGTTGTAGTAGCTGTAAGAGAAAGCAG
CAGTGTGTGGGTGCGCGATAAGAATCACCCACTTTCACTTTCACAGACACAGATACACAC
ATTTTGCTCTAGTTTGCAAAGAATACACAAGTATAATAATACACAAGTAAAAGCAAAACT
CACAAACACACACACACGCTCCCTTATTCATGCAAAACATCCAATCAAACCAACCACCCC
TCCCCCCCCCCCCCATCCCATTAGGAAAAAGAAATGAAGATAGTTTAGTAGAGTGTGGAG
CATGTACGAAGCACGAGGCAGATAAGAGTTACAGAAAGAGAAAAGAGAGAAGAGAAAAAG
AAAAGAACAAAAAAAGTTTAAAGAAGCAAAAAAAAACATTGATGCAAATACATAATCCTG
CAAATTGTTGTTAAAAAAAAAAAAAAAAAGGGCGCCGCTCGCGCCCACGCGTCCGCGGAC
GCGTGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7876#0      CATGACAGCAAACTCTTTAGAGAGGGTGTAGTGTTGTTGCAAGGGAAAGAATAGAGATCG 60
consensus_7876#1      ------------------------------------------------------------
                                                                                  

consensus_7876#0      TTATCGAAGTCGATAAATAAAAGGGAAACATGCTACTAAATACATAGCAAAATGCAACAA 120
consensus_7876#1      ------------------------------------------------------------
                                                                                  

consensus_7876#0      AAAAAACACAGCTGAACCTAATCAACATAAAGCTAAACACAAGTTGTGTGAGTAAAAACA 180
consensus_7876#1      ------------------------------------------------------------
                                                                                  

consensus_7876#0      CAAAAACAAACACAAAGAAAACAAAACACACGCAAAACATAAGATAACGAATAAAGAGAA 240
consensus_7876#1      ------------------------------------------------------------
                                                                                  

consensus_7876#0      ATGTGCGTAAAAATTAACAAGAAAGTGGGACAGAACATTAGGTCTATATAGAAGTACATA 300
consensus_7876#1      --------------------------CCGATA-AATAT-ATATATATATATATATATATA 32
                                                  ** * ** ** *  * ****** *  ** ***

consensus_7876#0      TATATATATATTTAATACAGAGATATAGAGAAAGAGAGTCAACTTATAGAAAGAGAGAGT 360
consensus_7876#1      TATATATATATTTAATACAGAGATATAGAGAAAGAGAGTCAACTTATAGAAAGAGAGAGT 92
                      ************************************************************

consensus_7876#0      GAGAGAGAACAGGCAAAGGAAATGGGAAATAAAACTCCCTCTAAAAAAGTAATGTGTTAA 420
consensus_7876#1      GAGAGAGAACAGGCAAAGAAAATGGGAAATAAAACCCCCTCTAAAAAAGGAATGTGTTAA 152
                      ****************** **************** ************* **********

consensus_7876#0      AAAGAAAGAAATGTGTTAATAGAACGTGATAGGAGAATGAGCGTGTGTGTGTGTGAGTAA 480
consensus_7876#1      AAAGAAAGAAATGTGTTAATAGAACGTGATAGGAGAATGAGCGTGTGTGTGTGTGAGTAA 212
                      ************************************************************

consensus_7876#0      ACGAGAGAGGGGTAGGAATGTGTTATAAAACGTAAAAATGTGAGCAAATGTGTAAGAGGT 540
consensus_7876#1      ACGAGAGAGGGGTAGGAATGTGTTATAAAACGTAAAAATGTGAGCAAATGTGTAAGAGGT 272
                      ************************************************************

consensus_7876#0      TAGTTGTAGTAGCTGTAAGAGAAAGCAGCAGTGTGTGGGTGCGCGATAAGAATCACCCAC 600
consensus_7876#1      TAGTTGTAGTAGCTGTAAGAGAAAGCAGCAGTGTGTGGGTGCGCGATAAGAATCACCCAC 332
                      ************************************************************

consensus_7876#0      TTTCACTTTCACAGACACAGATACACACATTTTGCTCTAGTTTGCAAAGAATACACAAGT 660
consensus_7876#1      TTTCACTTTCACAGACACAGATACACACATTTTGCTCTAGTTTGCAAAGAATACACAAGT 392
                      ************************************************************

consensus_7876#0      ATAATAATACACAAGTAAAAGCAAAACTCACAAACACACACACACGCTCCCTTATTCATG 720
consensus_7876#1      ATAATAATACACAAGTAAAAGCAAAACTCACAAACACACACACACGCTCCCTTATTCATG 452
                      ************************************************************

consensus_7876#0      CAAAACATCCAATCAAACCAACCACCCCTCCC---------------------------- 752
consensus_7876#1      CAAAACATCCAATCAAACCAACCACCCCTCCCCCCCCCCCCCATCCCATTAGGAAAAAGA 512
                      ********************************                            

consensus_7876#0      ------------------------------------------------------------
consensus_7876#1      AATGAAGATAGTTTAGTAGAGTGTGGAGCATGTACGAAGCACGAGGCAGATAAGAGTTAC 572
                                                                                  

consensus_7876#0      ------------------------------------------------------------
consensus_7876#1      AGAAAGAGAAAAGAGAGAAGAGAAAAAGAAAAGAACAAAAAAAGTTTAAAGAAGCAAAAA 632
                                                                                  

consensus_7876#0      ------------------------------------------------------------
consensus_7876#1      AAAACATTGATGCAAATACATAATCCTGCAAATTGTTGTTAAAAAAAAAAAAAAAAAGGG 692
                                                                                  

consensus_7876#0      ----------------------------------
consensus_7876#1      CGCCGCTCGCGCCCACGCGTCCGCGGACGCGTGG 726