cluster # 788

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Anopheles gambiae
cluster # 788 cluster # 788 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_788#0 length = 784 sequences # 1

consensus_788#1 length = 369 sequences # 1

consensusID : consensus_788#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 784
fasta sequence

                              [CCGGCAGCAGCAACCACTAGCAGTGAGAGCGGGAGCTAGTAAGAAAAAAAAAGAAAAAGACCAGCTTTCCAGGGGATGATGTGTAACAAGTTGTGAGAAGCTGGCTGGTTCCGGATCTTGCCGGGAAAAAAGCGTACCTCAACGCTCGGTGTGGAGTGAAAACTGTGAGAGCTTACGAAAAATTTAGCCCAAAAACGTTTGACAAGGGTGCTAAAGACACAACAAAGCTTCATATAATAGACCGTATAGGCTCTAGTGTGTTACCAGGAGATAGTGTAGCTAGCTTTATTTCGAATTGTTTTGTTTATTTTTAGTACCAAATCATCCGTCTACAGTCCGTATCCTGTACCCATTGACCACATCCACAGCGTGCGTGTTACTTCAAACGTTTTCCAGCAGTGCATTCGTGCATCGTTAGTGAGCTAGTGGTGCGAGCAGTGCGAGAAGTGCGTGACGATAGTGTGTCGGTAGTGTCTGTAAAGTTGAAACTCTCGACCATACTTCCTCGGCCCTTTTGGATACGTCACATTGTATCGTCCCATTCAAGGTGAAATAAAGTTTCGATAGTTGATTGCGACCTCAAGGAATAACCCAGCATTAATCCCCCTCGAAGGCTCGACAGACAGATTACGCAAGACAACGAACTATGTCGAGTCAACAGAAGCATCGGATTCAGGATTCCTGACGGCCTAAGGGATGTGCTGCTGGAGTTTTCCATAGCGTACCTGCTGGAGCACCCGGGCGATGTGATCGATTACCCGGGAACGTTCTTTTACAAGCTGGC]

[+] EMBL BM617822             [CCGGCAGCAGCAACCACTAGCAGTGAGAGCGGGAGCTAGTAAGAAAAAAAAAGAAAAAGACCAGCTTTCCAGGGGATGATGTGTAACAAGTTGTGAGAAGCTGGCTGGTTCCGGATCTTGCCGGGAAAAAAGCGTACCTCAACGCTCGGTGTGGAGTGAAAACTGTGAGAGCTTACGAAAAATTTAGCCCAAAAACGTTTGACAAGGGTGCTAAAGACACAACAAAGCTTCATATAATAGACCGTATAGGCTCTAGTGTGTTACCAGGAGATAGTGTAGCTAGCTTTATTTCGAATTGTTTTGTTTATTTTTAGTACCAAATCATCCGTCTACAGTCCGTATCCTGTACCCATTGACCACATCCACAGCGTGCGTGTTACTTCAAACGTTTTCCAGCAGTGCATTCGTGCATCGTTAGTGAGCTAGTGGTGCGAGCAGTGCGAGAAGTGCGTGACGATAGTGTGTCGGTAGTGTCTGTAAAGTTGAAACTCTCGACCATACTTCCTCGGCCCTTTTGGATACGTCACATTGTATCGTCCCATTCAAGGTGAAATAAAGTTTCGATAGTTGATTGCGACCTCAAGGAATAACCCAGCATTAATCCCCCTCGAAGGCTCGACAGACAGATTACGCAAGACAACGAACTATGTCGAGTCAACAGAAGCATCGGATTCAGGATTCCTGACGGCCTAAGGGATGTGCTGCTGGAGTTTTCCATAGCGTACCTGCTGGAGCACCCGGGCGATGTGATCGATTACCCGGGAACGTTCTTTTACAAGCTGGC]




>consensus_788#0
CCGGCAGCAGCAACCACTAGCAGTGAGAGCGGGAGCTAGTAAGAAAAAAAAAGAAAAAGA
CCAGCTTTCCAGGGGATGATGTGTAACAAGTTGTGAGAAGCTGGCTGGTTCCGGATCTTG
CCGGGAAAAAAGCGTACCTCAACGCTCGGTGTGGAGTGAAAACTGTGAGAGCTTACGAAA
AATTTAGCCCAAAAACGTTTGACAAGGGTGCTAAAGACACAACAAAGCTTCATATAATAG
ACCGTATAGGCTCTAGTGTGTTACCAGGAGATAGTGTAGCTAGCTTTATTTCGAATTGTT
TTGTTTATTTTTAGTACCAAATCATCCGTCTACAGTCCGTATCCTGTACCCATTGACCAC
ATCCACAGCGTGCGTGTTACTTCAAACGTTTTCCAGCAGTGCATTCGTGCATCGTTAGTG
AGCTAGTGGTGCGAGCAGTGCGAGAAGTGCGTGACGATAGTGTGTCGGTAGTGTCTGTAA
AGTTGAAACTCTCGACCATACTTCCTCGGCCCTTTTGGATACGTCACATTGTATCGTCCC
ATTCAAGGTGAAATAAAGTTTCGATAGTTGATTGCGACCTCAAGGAATAACCCAGCATTA
ATCCCCCTCGAAGGCTCGACAGACAGATTACGCAAGACAACGAACTATGTCGAGTCAACA
GAAGCATCGGATTCAGGATTCCTGACGGCCTAAGGGATGTGCTGCTGGAGTTTTCCATAG
CGTACCTGCTGGAGCACCCGGGCGATGTGATCGATTACCCGGGAACGTTCTTTTACAAGC
TGGC

consensusID : consensus_788#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 369
fasta sequence

                              [CCGCTGAAGTGAAAGCTACCAGCCGTGCGTGCGAGCTGTGAAAAAGTGACCACCTTGTGAAGGTTGTTTTATTTTTTCTTTGCCGCCATTGAAGCGCTTTCCGGTCCCGCACTCCGTGCTTCCGGCCGAAACTGGTGCAGTTTTACCCATCGATAGGCGACGGTGCTGTGCTCCAAGTCATACTGTGCCAGTGTGTCCAGAAGGCGTCGCGAAAGGTGGTGTTTGCTGCCCGGAGGATCGAAGCAGTCGTGTGACAGTGTACCAAATCATCCGTCTACAGTCCGTATCCTGTACCCATTGACCACATCCACAGCGTGCGTGTTACTTCAAACGTTTTCCAGCAGTGCATTTCGTGCATCGTTAGTGAGC]

[+] EMBL BM624667             [CCGCTGAAGTGAAAGCTACCAGCCGTGCGTGCGAGCTGTGAAAAAGTGACCACCTTGTGAAGGTTGTTTTATTTTTTCTTTGCCGCCATTGAAGCGCTTTCCGGTCCCGCACTCCGTGCTTCCGGCCGAAACTGGTGCAGTTTTACCCATCGATAGGCGACGGTGCTGTGCTCCAAGTCATACTGTGCCAGTGTGTCCAGAAGGCGTCGCGAAAGGTGGTGTTTGCTGCCCGGAGGATCGAAGCAGTCGTGTGACAGTGTACCAAATCATCCGTCTACAGTCCGTATCCTGTACCCATTGACCACATCCACAGCGTGCGTGTTACTTCAAACGTTTTCCAGCAGTGCATTTCGTGCATCGTTAGTGAGC]




>consensus_788#1
CCGCTGAAGTGAAAGCTACCAGCCGTGCGTGCGAGCTGTGAAAAAGTGACCACCTTGTGA
AGGTTGTTTTATTTTTTCTTTGCCGCCATTGAAGCGCTTTCCGGTCCCGCACTCCGTGCT
TCCGGCCGAAACTGGTGCAGTTTTACCCATCGATAGGCGACGGTGCTGTGCTCCAAGTCA
TACTGTGCCAGTGTGTCCAGAAGGCGTCGCGAAAGGTGGTGTTTGCTGCCCGGAGGATCG
AAGCAGTCGTGTGACAGTGTACCAAATCATCCGTCTACAGTCCGTATCCTGTACCCATTG
ACCACATCCACAGCGTGCGTGTTACTTCAAACGTTTTCCAGCAGTGCATTTCGTGCATCG
TTAGTGAGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_788#0      CCGGCAGCAGCAACCACTAGCAGTGAGAGCGGGAGCTAGTAAGAAAAAAAAAGAAAAAGA 60
consensus_788#1      -----------------------------------CCGCT--GAAGTGAAAGCTACCAGC 23
                                                        *   *  ***   ***   *  ** 

consensus_788#0      CCAGCTTTCCAGGGGATGATGTGTAACAAGTTGTGAGAAGCTGGCTGGTTCCGGATCTTG 120
consensus_788#1      CGTGCGTGCGAGCTGTGAAAAAGTGACCACCT-TGTGAAGGTTGTTTTATTTTTTCTTTG 82
                     *  ** * * **  *   *   ** ** *  * ** **** * * *   *       ***

consensus_788#0      CCGGGAAAAAAGCGTACCTCAACGCTCGGTGTGGAGTGAAAACTGTGAGAGCTTACGAAA 180
consensus_788#1      CCGCCATTGAAGCGCTTTCCG--GTCCCGCACTCCGTGCTTCCGGCCGAAACTGGTGCAG 140
                     ***  *   *****     *   *  * *      ***    * *    * **   * * 

consensus_788#0      AATTTAGCCCAAAAACGTTTGACAAGGGTGCTAAAGACACAACAAAGCTTCATATAATAG 240
consensus_788#1      --TTTTACCCAT---CGATAGGCGACGGTGCTG----TGCTCCAAGTCATACTGTGCCAG 191
                       ***  ****    ** * * * * ******       *  ***  * *  * *   **

consensus_788#0      ACCGTATAGGCTCTAGTGTGTTACCAGGAGATAGTGTA-GCTAGCTTTATT-TCGAATTG 298
consensus_788#1      TGTGTCCAG-----AAGGCGTCGCGAA-AGGTGGTGTTTGCTGCCCGGAGGATCGAAGCA 245
                        **  **     *  * **  * *  ** * ****  ***  *   *   *****   

consensus_788#0      TTTTGTTTATTTTTAGTACCAAATCATCCGTCTACAGTCCGTATCCTGTACCCATTGACC 358
consensus_788#1      GTCGTGTGACAGT--GTACCAAATCATCCGTCTACAGTCCGTATCCTGTACCCATTGACC 303
                      *    * *   *  *********************************************

consensus_788#0      ACATCCACAGCGTGCGTGTTACTTCAAACGTTTTCCAGCAGTGCATT-CGTGCATCGTTA 417
consensus_788#1      ACATCCACAGCGTGCGTGTTACTTCAAACGTTTTCCAGCAGTGCATTTCGTGCATCGTTA 363
                     *********************************************** ************

consensus_788#0      GTGAGCTAGTGGTGCGAGCAGTGCGAGAAGTGCGTGACGATAGTGTGTCGGTAGTGTCTG 477
consensus_788#1      GTGAGC------------------------------------------------------ 369
                     ******                                                      

consensus_788#0      TAAAGTTGAAACTCTCGACCATACTTCCTCGGCCCTTTTGGATACGTCACATTGTATCGT 537
consensus_788#1      ------------------------------------------------------------
                                                                                 

consensus_788#0      CCCATTCAAGGTGAAATAAAGTTTCGATAGTTGATTGCGACCTCAAGGAATAACCCAGCA 597
consensus_788#1      ------------------------------------------------------------
                                                                                 

consensus_788#0      TTAATCCCCCTCGAAGGCTCGACAGACAGATTACGCAAGACAACGAACTATGTCGAGTCA 657
consensus_788#1      ------------------------------------------------------------
                                                                                 

consensus_788#0      ACAGAAGCATCGGATTCAGGATTCCTGACGGCCTAAGGGATGTGCTGCTGGAGTTTTCCA 717
consensus_788#1      ------------------------------------------------------------
                                                                                 

consensus_788#0      TAGCGTACCTGCTGGAGCACCCGGGCGATGTGATCGATTACCCGGGAACGTTCTTTTACA 777
consensus_788#1      ------------------------------------------------------------
                                                                                 

consensus_788#0      AGCTGGC 784
consensus_788#1      -------