cluster # 7900

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Anopheles gambiae
cluster # 7900 cluster # 7900 Sequences # 8 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7900#0 length = 696 sequences # 2

consensus_7900#1 length = 622 sequences # 2
consensus_7900#2 length = 582 sequences # 4

consensusID : consensus_7900#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 696
fasta sequence

                              [CCGCCCACGCGTCCGATTTGGACGAATTTCCGCTCTTGGAATAGTGTTTCACAATGGCATTAAAAACCTACGGCGATAAACCGATTAGTTTTCAGGTAGAAGAAAATGGCGAATATTATTGTGTCGGTTCGGAGGTTGGAAACTACTTGCGCCTCTTCAGGGGCAGCCTGTACAAAAAGTATCCGGGAATGTCCCGGCGCTTACTGACGAACGAGGAGCGCAAACGGCTACTGGACTCTGGCATTAGCAACCATCTGCTGTCGAGCTCTGTCTCGCTGTTAAAAGCGACCGAAGTACAGGATGTGCTCGATGGCAATGATGAAAAGTACAAGGCCGTGTCGGTACACACTTCCGAGCCACCGGCTCCGCGGGAAAGCAAATCAAGCAAGAAGCAACCGCCATGGGTCCCGACGATGCCCAATTCGAGCCACCTGGACGCGGTGCCGCAAGCGACACCGATCAATCGGAACCGTGTGTACAACAAAAAGGTGCGCACCTTTCCGATGTGCTTCGACGATACCGATCCCACACTGAACGTGGAGAATGCATCTCAGTCGGAAATATTGGTACCGATTCGTTTGGACATGGAGATCGAAGGTCAAAAGCTGCGCGACACATTCACGTGGAATCGCAACGAATCTATGATTACACCGGGAACAGTTTTGCCGAGGTGTTGTGCGATGATTTGGACCTTAA]

[+] EMBL BM638628             [CCGCCCACGCGTCCGATTTGGACGAATTTCCGCTCTTGGAATAGTGTTTCACAATGGCATTAAAAACCTACGGCGATAAACCGATTAGTTTTCAGGTAGAAGAAAATGGCGAATATTATTGTGTCGGTTCGGAGGTTGGAAACTACTTGCGCCTCTTCAGGGGCAGCCTGTACAAAAAGTATCCGGGAATGTCCCGGCGCTTACTGACGAACGAGGAGCGCAAACGGCTACTGGACTCTGGCATTAGCAACCATCTGCTGTCGAGCTCTGTCTCGCTGTTAAAAGCGACCGAAGTACAGGATGTGCTCGATGGCAATGATGAAAAGTACAAGGCCGTGTCGGTACACACTTCCGAGCCACCGGCTCCGCGGGAAAGCAAATCAAGCAAGAAGCAACCGCCATGGGTCCCGACGATGCCCAATTCGAGCCACCTGGACGCGGTGCCGCAAGCGACACCGATCAATCGGAACCGTGTGTACAACAAAAAGGTGCGCACCTTTCCGATGTGCTTCGACGATACCGATCCCACACTGAACGTGGAGAATGCATCTCAGTCGGAAATATTGGTACCGATTCGTTTGGACATGGAGATCGAAGGTCAAAAGCTGCGCGACACATTCACGTGGAATCGCAACGAATCTATGATTACACCGGGAACAGTTTTGCCGAGGTGTTGTGCGATGATTTGGA      ]
[+] EMBL BX626645             [                                                      TGGCATTAAAAACATACGGCGATAAACCGATTAGTTTTCAGGTAGAAGAAAATGGCGAATATTATTGCGTCGGTTCGGAGGTCGGAAACTACTTGCGCCTCTTTAGGGGCAGCCTGTACAAAAAGTATCCGGGAATGTCCCGGCGCTTACTGACGAACGAGGAGCGCAAACGGCTACTGGACTCTGGCATTAGCAACCATCTGCTGTCGAGCTCTGTCTCGCTGTTAAAAGCGACCGAAGTACAGGATGTGCTCGATGGCAACGATGAAAAGTACAAGGCCGTGTCGGTACACACTTCCGAGCCACCGGCTCCGCGGGAAAGCAAATCAAGCAAGAAGCAACCGCCATGGGTCCCGACGATGCCCAATTCGAGCCACCTGGACGCGGTGCCGCAAGCGACACCGATCAATCGGAACCGTGTGTACAACAAAAAGGTGCGCACCTTTCCGATGTGCTTCGACGATACCGATCCCACACTGAACGTGGAGAATGCATCTCAGTCGGAAATATTGGTACCGATTCGTTTGGACATGGAGATCGAANGTCAAAAGCTGCGCGACACATTCACGTGGAATCGCAACGAATCTATGATTACACC GGAACAG TTTGCCGANGTGCTGTGCGATGATTTGGACCTTAA]




>consensus_7900#0
CCGCCCACGCGTCCGATTTGGACGAATTTCCGCTCTTGGAATAGTGTTTCACAATGGCAT
TAAAAACCTACGGCGATAAACCGATTAGTTTTCAGGTAGAAGAAAATGGCGAATATTATT
GTGTCGGTTCGGAGGTTGGAAACTACTTGCGCCTCTTCAGGGGCAGCCTGTACAAAAAGT
ATCCGGGAATGTCCCGGCGCTTACTGACGAACGAGGAGCGCAAACGGCTACTGGACTCTG
GCATTAGCAACCATCTGCTGTCGAGCTCTGTCTCGCTGTTAAAAGCGACCGAAGTACAGG
ATGTGCTCGATGGCAATGATGAAAAGTACAAGGCCGTGTCGGTACACACTTCCGAGCCAC
CGGCTCCGCGGGAAAGCAAATCAAGCAAGAAGCAACCGCCATGGGTCCCGACGATGCCCA
ATTCGAGCCACCTGGACGCGGTGCCGCAAGCGACACCGATCAATCGGAACCGTGTGTACA
ACAAAAAGGTGCGCACCTTTCCGATGTGCTTCGACGATACCGATCCCACACTGAACGTGG
AGAATGCATCTCAGTCGGAAATATTGGTACCGATTCGTTTGGACATGGAGATCGAAGGTC
AAAAGCTGCGCGACACATTCACGTGGAATCGCAACGAATCTATGATTACACCGGGAACAG
TTTTGCCGAGGTGTTGTGCGATGATTTGGACCTTAA

consensusID : consensus_7900#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 622
fasta sequence

                              [GCAAGCAGATCGNCACGAGGCTNTAATGGCATTAAAAACATACGGCGATAAACCGATAAGTTTTCAGGTAGAAGAAAATGGCGAATATTATTGCGTCGGTTCGGAGGTTGGAAACTACTTGCGCCTCTTCAGGGGGCAGCCTGTACAAAAAGTATCCGGGAATGTCCCGGCGCTTACTGACGAACGAGGAGCGCAAACGGCTACTGGACTCTGGCATTAGCAACCATCTGCTGTCGAGCTCTGTCTCGCTGTT-AAAAGCGACCGAAGTACAGGATGTGCTCGATGGCAACGATGAAAAGTACAAGGCCGTGTCGGTACACACTTCCGAGCCACCGGCTCCGCGGGAAAGCAAATCAAGCAAGAAGCAACCGCCATGGGTCCCGACGATGCCCAATTCGAGCCACCTGGACGCGGTGCCGCAAGCGACACCGATCAATCGGAACCGTGTGTACAACAAAAAGGTGCGCACCTTTCCGATGTGCTTCGACGATACCGATCCCACACTGAACGTGGAGAATGCATCTCAGTCGGAGATATTGGTACCGATATCGTAATGGACATGGAGATCGAAGGTCAAAAGCTGCGCGACACAGTTCACGTGGAATCGCAACGAATCTATGAT]

[+] EMBL BX469591             [GCAAGCAGATCGNCACGAGGCTNTAATGGCATTAAAAACATACGGCGATAAACCGATAAGTTTTCAGGTAGAAGAAAATGGCGAATATTATTGCGTCGGTTCGGAGGTTGGAAACTACTTGCGCCTCTTCAGGGGGCAGCCTGTACAAAAAGTATCCGGGAATGTCCCGGCGCTTACTGACGAACGAGGAGCGCAAACGGCTACTGGACTCTGGCATTAGCAACCATCTGCTGTCGAGCTCTGTCTCGCTGTT AAAAGCGACCGAAGTACAGGATGTGCTCGATGGCAACGATGAAAAGTACAAGGCCGTGTCGGTACACACTTCCGAGCCACCGGCTCCGCGGGAAAGCAAATCAAGCAAGAAGCAACCGCCATGGGTCCCGACGATGCCCAATTCGAGCCACCTGGACGCGGTGCCGCAAGCGACACCGATCAATCGGAACCGTGTGTACAACAAAAAGGTGCGCACCTTTCCGATGTGCTTCGACGATACCGATCCCACACTGAACGTGGAGAATGCATCTCAGTCGGAGATATTGGTACCGATATCGTAATGGACATGGAGATCGAAGGTCAAAAGCTGCGCGACACAGTTCACGTGGAATCGCAACGAATCTATGAT]
[+] EMBL CNS09CU7             [                                                                                                                                                                                                    ACGGCTACTGGACTCTGGCATTAGCAACCATCTGCTGTCGAGCTCTGTCTCGCTGTTAAAAAGCGACCGAAGTACAGGATGTGCT                                                                                                                                                                                                                                                                                                                                                      ]




>consensus_7900#1
GCAAGCAGATCGNCACGAGGCTNTAATGGCATTAAAAACATACGGCGATAAACCGATAAG
TTTTCAGGTAGAAGAAAATGGCGAATATTATTGCGTCGGTTCGGAGGTTGGAAACTACTT
GCGCCTCTTCAGGGGGCAGCCTGTACAAAAAGTATCCGGGAATGTCCCGGCGCTTACTGA
CGAACGAGGAGCGCAAACGGCTACTGGACTCTGGCATTAGCAACCATCTGCTGTCGAGCT
CTGTCTCGCTGTTAAAAGCGACCGAAGTACAGGATGTGCTCGATGGCAACGATGAAAAGT
ACAAGGCCGTGTCGGTACACACTTCCGAGCCACCGGCTCCGCGGGAAAGCAAATCAAGCA
AGAAGCAACCGCCATGGGTCCCGACGATGCCCAATTCGAGCCACCTGGACGCGGTGCCGC
AAGCGACACCGATCAATCGGAACCGTGTGTACAACAAAAAGGTGCGCACCTTTCCGATGT
GCTTCGACGATACCGATCCCACACTGAACGTGGAGAATGCATCTCAGTCGGAGATATTGG
TACCGATATCGTAATGGACATGGAGATCGAAGGTCAAAAGCTGCGCGACACAGTTCACGT
GGAATCGCAACGAATCTATGAT

consensusID : consensus_7900#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 582
fasta sequence

                              [CAGAATCGCCCGAGGTTAACT-AAC-A--ATTTGGACGAATTTCCG-CTCTTGGAATAGTGTTTCACAAT-GGCATT---AAAAACA-TAC-----GGCGATAAA-CCGATTA--GTTTTCA-GGTAGAAGAAAATGGCGAATATTATTGCGTCGGTTCGGAGGTTGGAAACTACTTGCGCCTCTTCAGGGGCAGCCTGTACAAAAAGTATCCGGGAATGTCCCGGCGCTTACTGACGAACGAGGAGCGCAAACGGCTACTGGACTCT-GGCATTAGCAACCAT-CTGCTGTCGAGCTCTGTCTCGCTGTTAAAAGCGACCGAAGTACAGGATGTGCTCGATGGCAACGATGAAAAGTACAAGG-CCGTGTCGGTACACACTTCCGAGCCACCGGCTCCGCGGGAAAGCAAATCAAGCAAGAAGCAACCGCCATGGGT-CCCGACGATGCCCAATTCGAGCCACCTGGACGCGGTGCCGCAAGCGACACCGATCAATCGGAACCGTGTGTACAACAAAAAGGTGCGCACCTTTCCGATGTGCTTCGACGATACCGATCCCACACTGAACGTGGAGAATGCATCTCA-TC-GGAAATATTGGTACCGA]

[+] EMBL AL697590             [CAGAATCGCCCAGGGTTA  T AAC A  ATTTGGACGAATTTCCG CTC TGGAATAGTGTTTCACAAT GGCATT   AAAAACA TAC     GGCGATAAA CCGATTA  GTTTTCA GGTAGAAGAAAATGGCGAATATTATTGCGTCGGTTCGGAGGTCGGAAACTACTTGCGCCTCTTTAGGGGCAGCCTGTACAAAAAGTATCCGGGAATGTCCCGGCGCTTACTGACGAACGAGGAGCGCAAACGG TACTGGACTCTGGGCATTAGCAA CAT CTGCTGTCGAGCTCTGTCTCGCTGTTAAAAGCGA CGAAGTACAGGATGTGCTCGATGGCAACGATGAAAAGTACAAGGCCCGTGTCGGTACACACTTCCGAGCCAACGGCTCCGCGGGAAAGCAAATCAAGCAAGAAGCAACCGGCATGGGTCCCCGACGATGCCCAATTCGAGCCAACTGGACGCGGTGCCGCAAGCGA ACCGATCAATCGGAACCGTGTGTACAACAAAAAGGTGCGCACCTTTCCGATGTGCTTCGACGATACCGATCCCACACTG                                         ]
[+] EMBL AL932276             [    ATCCCCCGAGGTTAACT AAC A  ATTTGGACGAATTTCCG ATCTTGGAATAGTGTTTCACAAT GGCATT   AAAAACA TAC     GGCGATAAA CCGATAA  GTTTTCA GGTAGAAGAAAATGGCGAATATTATTGCGTCGGTTCGGAGGTTGGAAACTACTTGCGCCTCTTCAGGGGCAGCCTGTACAAAAAGTATCCGGGAATGTCCCGGCGCTTACTGACGAACGAGGAGCGCAAACGGCTACTGGACTCT GGCATTAGCAACCAT CTGCTGTCGAGCTCTGTCTCGCTGTTAAAAGCGACCGAAGTACAGGATGTGCTCGATGGCAACGATGAAAAGTACAAGG CCGTGTCGGTACACACTTCCGAGCCACCGGCTCCGCGGGAAAGCAAATCAAGCAAGAAGCAACCGCCATGGGT CCCGACGATGCCCAATTCGAGCC                                                                                                                                                 ]
[+] EMBL AL932793             [           cAGGTTAACTGAACTANCATTTGGACCAATTTCCGAATCTTGGAATAGTGTTTCACAATGGGCATTTAAAAAAACATTACCGGGGGGCGATAAACCCGAATAANCTTTTCANCGTAAAAGAAAATGGCGAATATTATTGCGTCGGTTCGCAGGTTGGAAACTACTTGCGCCTCTTCAGGGGCAGCCTGTACAAAAAGTATCCGGGAATGTCCCGGCGCTTACTGACGAACGAGGAGCGCAAACGGCTACTGGACTCT GGCATTAGCAACCATACTGCTGTCGAGCTCTGTCTCGCTGTTAAAAGCGACCGAAGTACAGGATGTGCTCGATGGCAACGATGAAAAGTACAAGG CCGTGTCGGTACACACTTCCGAGCCACCGGCTCCGCGGGAAAGCAAATCAAGCAAGAAGCAACCGCCATGGGT CCCGACGATGCCCAATTCGAGCCACCTGGACGCGGTGCCGCAAGCGACACCGATCAATCGGAACCGTGTGTACAACAAAAAGGTGCGCACCTTTCCGATGTGCTTCGACGATACCGATCCCACACTGAACGTGGAGAATGCATCTCA TC GGAAATATTGGTACCGA]
[+] EMBL BM579706             [         ccgtgaagAACT AAC A  ATTTGGACGAATTTCCG CTCTTGGAATAGTGTTTCACAAT GGCATT   AAAAACC TAC     GGCGATAAA CCGATTA  GTTTTCA GGTAGAAGAAAATGGCGAATATTATTGTGTCGGTTCGGAGGTTGGAAACTACTTGCGCCTCTTCAGGGGCAGCCTGTACAAAAAGTATCCGGGAATGTCCCGGCGCTTACTGACGAACGAGGAGCGCAAACGGCTACTGGACTCT GGCATTAGCAACCAT CTGCTGTCGAGCTCTGTCTCGCTGTTAAAAGCGACCGAAGTACAGGATGTGCTCGATGGCAATGATGAAAAGTACAAGG CCGTGTCGGTACACACTTCCGAGCCACCGGCTCCGCGGGAAAGCAAATCAAGCAAGAAGCAACCGCCATGGGT CCCGACGATGCCCAATTCGAGCCACCTGGACGCGGTGCCGCAAGCGACACCGATCAATCGGAACCGTGTGTACAACAAAAAGGTGCGCACCTTTCCGATGTGCTTCGACGATACCGATCCCACACTGAACGTGGAGAATGCATCTCAGTCGGGAAATATTGGTACCGA]




>consensus_7900#2
CAGAATCGCCCGAGGTTAACTAACAATTTGGACGAATTTCCGCTCTTGGAATAGTGTTTC
ACAATGGCATTAAAAACATACGGCGATAAACCGATTAGTTTTCAGGTAGAAGAAAATGGC
GAATATTATTGCGTCGGTTCGGAGGTTGGAAACTACTTGCGCCTCTTCAGGGGCAGCCTG
TACAAAAAGTATCCGGGAATGTCCCGGCGCTTACTGACGAACGAGGAGCGCAAACGGCTA
CTGGACTCTGGCATTAGCAACCATCTGCTGTCGAGCTCTGTCTCGCTGTTAAAAGCGACC
GAAGTACAGGATGTGCTCGATGGCAACGATGAAAAGTACAAGGCCGTGTCGGTACACACT
TCCGAGCCACCGGCTCCGCGGGAAAGCAAATCAAGCAAGAAGCAACCGCCATGGGTCCCG
ACGATGCCCAATTCGAGCCACCTGGACGCGGTGCCGCAAGCGACACCGATCAATCGGAAC
CGTGTGTACAACAAAAAGGTGCGCACCTTTCCGATGTGCTTCGACGATACCGATCCCACA
CTGAACGTGGAGAATGCATCTCATCGGAAATATTGGTACCGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7900#0      -----CCGCCCACGCGTC-----CGATTTGGACGAATTTCCGCTCTTGGAATAGTGTTTC 50
consensus_7900#2      CAGAATCGCCCGAGGTTAACTAACAATTTGGACGAATTTCCGCTCTTGGAATAGTGTTTC 60
consensus_7900#1      -------------------------------GCAAG---CAGATC--GNCACGAGGCTNT 24
                                                      * *    * * **  *  *    * *  

consensus_7900#0      ACAATGGCATTAAAAACCTACGGCGATAAACCGATTAGTTTTCAGGTAGAAGAAAATGGC 110
consensus_7900#2      ACAATGGCATTAAAAACATACGGCGATAAACCGATTAGTTTTCAGGTAGAAGAAAATGGC 120
consensus_7900#1      A--ATGGCATTAAAAACATACGGCGATAAACCGATAAGTTTTCAGGTAGAAGAAAATGGC 82
                      *  ************** ***************** ************************

consensus_7900#0      GAATATTATTGTGTCGGTTCGGAGGTTGGAAACTACTTGCGCCTCTTCAGGGG-CAGCCT 169
consensus_7900#2      GAATATTATTGCGTCGGTTCGGAGGTTGGAAACTACTTGCGCCTCTTCAGGGG-CAGCCT 179
consensus_7900#1      GAATATTATTGCGTCGGTTCGGAGGTTGGAAACTACTTGCGCCTCTTCAGGGGGCAGCCT 142
                      *********** ***************************************** ******

consensus_7900#0      GTACAAAAAGTATCCGGGAATGTCCCGGCGCTTACTGACGAACGAGGAGCGCAAACGGCT 229
consensus_7900#2      GTACAAAAAGTATCCGGGAATGTCCCGGCGCTTACTGACGAACGAGGAGCGCAAACGGCT 239
consensus_7900#1      GTACAAAAAGTATCCGGGAATGTCCCGGCGCTTACTGACGAACGAGGAGCGCAAACGGCT 202
                      ************************************************************

consensus_7900#0      ACTGGACTCTGGCATTAGCAACCATCTGCTGTCGAGCTCTGTCTCGCTGTTAAAAGCGAC 289
consensus_7900#2      ACTGGACTCTGGCATTAGCAACCATCTGCTGTCGAGCTCTGTCTCGCTGTTAAAAGCGAC 299
consensus_7900#1      ACTGGACTCTGGCATTAGCAACCATCTGCTGTCGAGCTCTGTCTCGCTGTTAAAAGCGAC 262
                      ************************************************************

consensus_7900#0      CGAAGTACAGGATGTGCTCGATGGCAATGATGAAAAGTACAAGGCCGTGTCGGTACACAC 349
consensus_7900#2      CGAAGTACAGGATGTGCTCGATGGCAACGATGAAAAGTACAAGGCCGTGTCGGTACACAC 359
consensus_7900#1      CGAAGTACAGGATGTGCTCGATGGCAACGATGAAAAGTACAAGGCCGTGTCGGTACACAC 322
                      *************************** ********************************

consensus_7900#0      TTCCGAGCCACCGGCTCCGCGGGAAAGCAAATCAAGCAAGAAGCAACCGCCATGGGTCCC 409
consensus_7900#2      TTCCGAGCCACCGGCTCCGCGGGAAAGCAAATCAAGCAAGAAGCAACCGCCATGGGTCCC 419
consensus_7900#1      TTCCGAGCCACCGGCTCCGCGGGAAAGCAAATCAAGCAAGAAGCAACCGCCATGGGTCCC 382
                      ************************************************************

consensus_7900#0      GACGATGCCCAATTCGAGCCACCTGGACGCGGTGCCGCAAGCGACACCGATCAATCGGAA 469
consensus_7900#2      GACGATGCCCAATTCGAGCCACCTGGACGCGGTGCCGCAAGCGACACCGATCAATCGGAA 479
consensus_7900#1      GACGATGCCCAATTCGAGCCACCTGGACGCGGTGCCGCAAGCGACACCGATCAATCGGAA 442
                      ************************************************************

consensus_7900#0      CCGTGTGTACAACAAAAAGGTGCGCACCTTTCCGATGTGCTTCGACGATACCGATCCCAC 529
consensus_7900#2      CCGTGTGTACAACAAAAAGGTGCGCACCTTTCCGATGTGCTTCGACGATACCGATCCCAC 539
consensus_7900#1      CCGTGTGTACAACAAAAAGGTGCGCACCTTTCCGATGTGCTTCGACGATACCGATCCCAC 502
                      ************************************************************

consensus_7900#0      ACTGAACGTGGAGAATGCATCTCAGTCGGAAATATTGGTACCGATTCGTTTGGACATGGA 589
consensus_7900#2      ACTGAACGTGGAGAATGCATCTCA-TCGGAAATATTGGTACCGA---------------- 582
consensus_7900#1      ACTGAACGTGGAGAATGCATCTCAGTCGGAGATATTGGTACCGATATCGTAATGGACATG 562
                      ************************ ***** *************                

consensus_7900#0      GATCGAAGGTCAAAAGCTGCGCGACACATTCACGTGGAATCGCAACGAATCTATGATTAC 649
consensus_7900#2      ------------------------------------------------------------
consensus_7900#1      GAGATCGAAGGTCAAAAGCTGCGCGACACAGTTCACGTGGAATCGCAACGAATCTATGAT 622
                                                                                  

consensus_7900#0      ACCGGGAACAGTTTTGCCGAGGTGTTGTGCGATGATTTGGACCTTAA 696
consensus_7900#2      -----------------------------------------------
consensus_7900#1      -----------------------------------------------