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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7919#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 996 fasta sequence
[CAGACAGACCATTCCCTCGACAGCTCCACCAGCACGTCGCAGCAGCATAACAGCGTTTGAAGGCATTAATCTGACCGGAAGCGTGCAGTGAAAAGCATGTCCGAGCAAATGGAGCAAGTAGGGCTACCGCCCGGTTGGGATTGTAAATACGATTCCAGAACAGGTCGCTACTACTACGTGAACCTGTTCACCAAAACGACGCAATGGGAGGATCCGCGGGCCAGGATCCGTCAGCTGCAAACTGGAGCACCACTTCACATCTCAAACGATAGCATTTCCATGCAGCCAGTGCATGGTTCTCCCTATCATGTGTACCCCGCCAGTAACTCGTTCTATCCAGCCCAGGCCGCCTTCCAGAATCCACCCTCCGGTGTGCCGAGCCTTAATGCTAGCCCCAACCTTGCCCAAAGATTGCAACAGCAGCAGCAGCAGCAACACATCGAAATGTCACCGATGGTACGGTCCAGCCCGCGGATGGGGCTCGGACGCCAGGGCATGGTCGAGACGACGTTCACCACGAACGTGACGGCGGCCGAAACCGATCTCACAGTCGCTAAAATTAACTCCATGTTTCCCACCGTGCCGGAAACCCACATCCGGATGCTGCTGAAGAAGTACTACAACCGTGAGGCGGTCGTAATAAGCGCCCTGCAGGTGGAGAAGCATCCGCTAACGACGCCCGGCCCGTACTCGACGCCACCGCTCGGCCACCGGCCCTTCCACAACACGGCGATGGGCGTCGTGTCCGCGTTCCAGATGACGCCCGTGCTCGGCGGGCGCAGTGAGATGTCCAGCTCGCGCACCGGCAGCCCGGTACCGCGTCCGGCCAGCGGTGCCAGCGGCAGCTACGCCGGCGGATACGGATCGCCCCGGAACGGACCGGCGGACGGGTATCGCAGCTCGCCGAAGCCCCACTCGTCGCCGAAGATGAAGCTGAGGTACATGAAGAGCATCTTCCCGAAGGCGGAGGAAACGCTCATCCTGGACGTGCTGGCC]
[+] EMBL AGA281961 [CAGACAGACCATTCCCTCGACAGCTCCACCAGCACGTCGCAGCAGCATAACAGCGTTTGAAGGCATTAATCTGAGCAGAAGCGTGCAGTGAAAAGCATGTCCGAGCAAATGGAGCAAGTAGGGCTACCGCCCGGTT GGATTGTAAATACGATTCCAGAACAGGTCGCTACTACTACGTGAACCTGTTCACCAAAACGACGCAATGGGAGGATTCGCGGGCCAGGATt ]
[+] EMBL BM635435 [ CCGGAAGCGTGCAGTGAAAAGCATGTCCGAGCAAATGGAGCAAGTAGGGCTACCGCCCGGTTGGGATTGTAAATACGATTCCAGAACAGGTCGCTACTACTACGTGAACCTGTTCACCAAAACGACGCAATGGGAGGATCCGCGGGCCAGGATCCGTCAGCTGCAAACTGGAGCACCACTTCACATCTCAAACGATAGCATTTCCATGCAGCCAGTGCATGGTTCTCCCTATCATGTGTACCCCGCCAGTAACTCGTTCTATCCAGCCCAGGCCGCCTTCCAGAATCCACCCTCCGGTGTGCCGAGCCTTAATGCTAGCCCCAACCTTGCCCAAAGATTGCAACAGCAGCAGCAGCAGCAACACATCGAAATGTCACCGATGGTACGGTCCAGCCCGCGGATGGGGCTCGGACGCCAGGGCATGGTCGAGACGACGTTCACCACGAACGTGACGGCGGCCGAAACCGATCTCACAGTCGCTAAAATTAACTCCATGTTTCCCACCGTGCCGGAAACCCACATCCGG ]
[+] EMBL BM585609 [ CCGGAAGCGTGCAGTGAAAAGCATGTCCGAGCAAATGGAGCAAGTAGGGCTACCGCCCGGTTGGGATTGTAAATACGATTCCAGAACAGGTCGCTACTACTACGTGAACCTGTTCACCAAAACGACGCAATGGGAGGATCCGCGGGCCAGGATCCGTCAGCTGCAAACTGGAGCACCACTTCACATTTCGAACGATAGCATTTCCATGCAGCCAGTGCATGGTTCTCCCTATCATGTGTACCCCGCCAGTAACTCGTTCTATCCAGCCCAGGCCGCCTTCCAGAATCCACCCTCCGGTGTGCCGAGCCTTAATGCTAGCCCCAACCTTGCCCAAAGATTGCAA CAGCAGCAGCAGCAACACATCGAAATGTCACCGATGGTACGGTCCAGCCCGCGGATGGGGCTCGGACGCCAGGGCATGGTCGAGACGACGTTCACCACGAACGTGACGGCGGCCGAAACa ]
[+] EMBL BX613436 [ GTAACTCGTTCTATCCAGCCCAGGCCGCCTTCCAGAATCCACCCTCCGGTGTGCCGAGCCTTAATGCTAGCCCCAACCTTGCCCAAAGATTGCAACAGCAGCAGCAGCAGCAACACATCGAAATGTCACCGATGGTACGGTCCAGCCCGCGGATGGGGCTCGGACGCCAGGGCATGGTCGAGACGACGTTCACCACGAACGTGACGGCGGCCGAAACCGATCTCACGGTCGCTAAAATTAACTCCATGTTTCCCACCGTGCCGGAAACCCACATCCGGATGCTGCTGAAGAAGTACTACAACCGTGAGGCGGTCGTAATAAGCGCCCTGCAGGTGGAGAAGCATCCGCTAACGACGCCCGGCCCGTACTCGACGCCACCGCTCGGCCACCGGCCCTTCCACAACACGGCGATGGGCGTCGTGTCCGCGTTCCAGATGACGCCCGTGCTCGGCGGGCGCAGTGAGATGTCCAGCTCGCGCACCGGCAGCCCGGTACCGCGTCCGGCCAGCGGTGCCAGCGGCAGCTACGCCGGCGGATACGGATCGCCCCGGAACGGACCGGCGGACGGGTATCGCAGCTCGCCGAAGCCCCACTCGTCGCCGAAGATGAAGCTGAGGTACATGAAGAGCATCTTCCCGAAGGCGGAGGAAACGCTCATCCTGGACGTGCTGGCC]
consensusID : consensus_7919#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 561 fasta sequence
[CCGGCGTGCAGTGAAAAGCATGTCCGAGCAAATGGAGCAAGTAGGGCTACCGCCCGGTTGGGATTGTAAATACGATTCCAGAACAGGTCGCTAGAAATGTCACCGATGGTACGGTCCAGCCCGCGGATGGGGCTCGGACGCCAGGGCATGGTCGAGACGACGTTCACCACGAACGTGACGGCGGCCGAAACCGATCTCACGGTCGCTAAAATTAACTCCATGTTTCCCACCGTGCCGGAAACCCACATCCGGATGCTGCTGAAGAAGTACTACAACCGTGAGGCGGTCGTAATAAGCGCCCTGCAGGTGGAGAAGCATCCGCTAACGACGCCCGGCCCGTACTCGACGCCACCGCTCGGCCACCGGCCCTTCCACAACACGGCGATGGGCGTCGTGTCCGCGTTCCAGATGACGCCCGTGCTCGGCGGGCGCAGTGAGATGTCCAGCTCGCGCACCGGCAGCCCGGTACCGCGTCCGGCCAGCGGTGCCAGCGGCAGCTACGCCGGCGGATACGGATCGCCCCGGAAACGGACCGGCGGACGGGGTATCGCAGCTTCGCCG]
[+] EMBL BM629563 [CCGGCGTGCAGTGAAAAGCATGTCCGAGCAAATGGAGCAAGTAGGGCTACCGCCCGGTTGGGATTGTAAATACGATTCCAGAACAGGTCGCTAGAAATGTCACCGATGGTACGGTCCAGCCCGCGGATGGGGCTCGGACGCCAGGGCATGGTCGAGACGACGTTCACCACGAACGTGACGGCGGCCGAAACCGATCTCACGGTCGCTAAAATTAACTCCATGTTTCCCACCGTGCCGGAAACCCACATCCGGATGCTGCTGAAGAAGTACTACAACCGTGAGGCGGTCGTAATAAGCGCCCTGCAGGTGGAGAAGCATCCGCTAACGACGCCCGGCCCGTACTCGACGCCACCGCTCGGCCACCGGCCCTTCCACAACACGGCGATGGGCGTCGTGTCCGCGTTCCAGATGACGCCCGTGCTCGGCGGGCGCAGTGAGATGTCCAGCTCGCGCACCGGCAGCCCGGTACCGCGTCCGGCCAGCGGTGCCAGCGGCAGCTACGCCGGCGGATACGGATCGCCCCGGAAACGGACCGGCGGACGGGGTATCGCAGCTTCGCCG]
consensusID : consensus_7919#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 486 fasta sequence
[CGGCACGAGGACAANTNCAGTGCTGTTTTGTGTACGGTTTTGGCTTCAAGACGGTCGTTATGTGTGACGCTCCGCTAGCCTAAATTCCCGCGCCTTCGCCAGTGGAGCAGAAGAAGCACCGAACTTCCGCGCAGTCGCAGACAGACCATGGNCCCTCGNACAGCTCCAGCAGCACGTCGCAGCAGCATAACAGCGTTTGAAGGCATTAATCTGAGCAGAAGCGTGCAGTGAAAAGCATGTCCGAGCAAATGGAGCAAGTAGGGCTACCGCCCGGTTGGGATTGTAAATACGATTCCAGAACAGGTCGCTACTACTACGTGAACCCTGTTCACCAAAACGACGCAATGGGAGGATCCGCGGGNCANAAGATACGCAAACAGCAAAACTNNAGCACCAACTTCACATCTCAAAACGATANCATTTTCCATGCAGCCAGTGCATGGNNCTCCCTATCATGTGTACCCCGCCAGTAACTCGTTCTATCCA]
[+] EMBL BX619775 [CGGCACGAGGACAANTNCAGTGCTGTTTTGTGTACGGTTTTGGCTTCAAGACGGTCGTTATGTGTGACGCTCCGCTAGCCTAAATTCCCGCGCCTTCGCCAGTGGAGCAGAAGAAGCACCGAACTTCCGCGCAGTCGCAGACAGACCATGGNCCCTCGNACAGCTCCAGCAGCACGTCGCAGCAGCATAACAGCGTTTGAAGGCATTAATCTGAGCAGAAGCGTGCAGTGAAAAGCATGTCCGAGCAAATGGAGCAAGTAGGGCTACCGCCCGGTTGGGATTGTAAATACGATTCCAGAACAGGTCGCTACTACTACGTGAACCCTGTTCACCAAAACGACGCAATGGGAGGATCCGCGGGNCANAAGATACGCAAACAGCAAAACTNNAGCACCAACTTCACATCTCAAAACGATANCATTTTCCATGCAGCCAGTGCATGGNNCTCCCTATCATGTGTACCCCGCCAGTAACTCGTTCTATCCA]
consensusID : consensus_7919#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 392 fasta sequence
[TTGCAACAGCAGCAGCAGCAGCAACACATCGAAATGTCACCGATGGTACGGTCCAGCCCGCGGATGGGGCTCGGACGCCAGGGCATGGTCGAGACGACGTTCACCACGAACGTGACGGCGGCCGAAACCGATCTCACGGTCGCTAAAATTAACTCCATTGTTAGGAAAAGGCAGTGCTATTGATGAGTCCAACCCGGACGTATAAACGAGATGAAGTGAAATGACAGCTAGGGAAAGTGACAGATGAAATGACAGGGAAACGGTTGCACGCGCTTCAAACCAGTAGCGAGTGAAGCGAGCAGCAGGTGACACCGTTTTAAAGTTTTATTGCTATTTTATTTGGATTTATTTGTATTTGTCTTCAGGAGAATAAATAGTTAAACTAAAAAAAA]
[-] EMBL AGA280263 [TTGCAACAGCAGCAGCAGCAGCAACACATCGAAATGTCACCGATGGTACGGTCCAGCCCGCGGATGGGGCTCGGACGCCAGGGCATGGTCGAGACGACGTTCACCACGAACGTGACGGCGGCCGAAACCGATCTCACGGTCGCTAAAATTAACTCCATTGTTAGGAAAAGGCAGTGCTATTGATGAGTCCAACCCGGACGTATAAACGAGATGAAGTGAAATGACAGCTAGGGAAAGTGACAGATGAAATGACAGGGAAACGGTTGCACGCGCTTCAAACCAGTAGCGAGTGAAGCGAGCAGCAGGTGACACCGTTTTAAAGTTTTATTGCTATTTTATTTGGATTTATTTGTATTTGTCTTCAGGAGAATAAATAGTTAAACTAAAAAAAA]
consensusID : consensus_7919#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 110 fasta sequence
[TCGCTGTCATTTCATCTGTCACATACACAAGCTGTCATTTCACTTCATCTCGTTTATACGTCCGGGTTGGACTCATCAATAGCACTGCCTTTTCCTAACAGGGAGGGAAT]
[+] EMBL AGA281958 [TCGCTGTCATTTCATCTGTCACATACACAAGCTGTCATTTCACTTCATCTCGTTTATACGTCCGGGTTGGACTCATCAATAGCACTGCCTTTTCCTAACAGGGAGGGAAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7919#0 CAGACAGACCATTCCCTCGACAGCTCCACCAGCACGTCGCAGCAGCATAACAGCGTTTGA 60
consensus_7919#1 ------------------------------------------------------------
consensus_7919#2 ------------------------------------------------------------
consensus_7919#4 ------------------------------------------------------------
consensus_7919#3 ------------------------------------------------------------
consensus_7919#0 AGGCATTAATCTGACCGGAAGCGTGCAGTGAAAAGCATGTCCGAGCAAATGGAGCAAGTA 120
consensus_7919#1 ------------------------------------------------------------
consensus_7919#2 ------------------------------------------------------------
consensus_7919#4 ------------------------------------------------------------
consensus_7919#3 ------------------------------------------------------------
consensus_7919#0 GGGCTACCGCCCGGTTGGGATTGTAAATACGATTCCAGAACAGGTCGCTACTACTACGTG 180
consensus_7919#1 ------------------------------------------------------------
consensus_7919#2 ------------------------------------------------------------
consensus_7919#4 ------------------------------------------------------------
consensus_7919#3 ------------------------------------------------------------
consensus_7919#0 AACCTGTTCACCAAAACGACGCAATGGGAGGATCCGCGGGCCAGGATCCGTCAGCTGCAA 240
consensus_7919#1 ------------------------------------------------------------
consensus_7919#2 ------------------------------------------------------------
consensus_7919#4 ------------------------------------------------------------
consensus_7919#3 ------------------------------------------------------------
consensus_7919#0 ACTGGAGCACCACTTCACATCTCAAACGATAGCATTTCCATGCAGCCAGTGCATGGTTCT 300
consensus_7919#1 ------------------------------------------------------------
consensus_7919#2 ------------------------------------------------------------
consensus_7919#4 ------------------------------------------------------------
consensus_7919#3 ------------------------------------------------------------
consensus_7919#0 CCCTATCATGTGTACCCCGCCAGTAACTCGTTCTATCCAGCCCAGGCCGCCTTCCAGAAT 360
consensus_7919#1 -----------------------------------------CCGG--CGTGCAGTGAAAA 17
consensus_7919#2 ------------------------------------------------------------
consensus_7919#4 ------------------------------------------------------------
consensus_7919#3 ------------------------------------------------------------
consensus_7919#0 CCACCCTCCGGTGTGCCGAGCCTTAATGCTAGCCCCAACCTTGCCCAAAGATTGCAACAG 420
consensus_7919#1 GCATGTCCGAGCAAATGGAGC---AAGTAGGGCTACCGCCCGGTT--GGGATTGTAAATA 72
consensus_7919#2 CGGCACGAGGACAANTNCAGTGCTGTTTTGTGTACGGTTTTGGCTTCAAGACGGTCGTTA 60
consensus_7919#4 ------------------------------------------------------------
consensus_7919#3 ---------------------------------------------------TTGCAACAG 9
consensus_7919#0 CAGCAGCAGCAGCAACACATCGAAATGTCACCGATGGTACGGTCCAGCCCGCGGA---TG 477
consensus_7919#1 CGATTCCAGAACAGGTCGCTAGAAATGTCACCGATGGTACGGTCCAGCCCGCGGA---TG 129
consensus_7919#2 TGTGTGACGCTCCGCTAGCCTAAATTCCCGCGCCTTCGCCAGTGGAGCAGAAGAAGCACC 120
consensus_7919#4 ------------------------------------------------------------
consensus_7919#3 CAGCAGCAGCAGCAACACATCGAAATGTCACCGATGGTACGGTCCAGCCCGCGGA---TG 66
consensus_7919#0 GGGCTCGGACGCCAGGGCATGGTCGAGACGACGTTCACCACGAACGTGACGGCGGCCGAA 537
consensus_7919#1 GGGCTCGGACGCCAGGGCATGGTCGAGACGACGTTCACCACGAACGTGACGGCGGCCGAA 189
consensus_7919#2 GAACTTCCGCGCAGTCGCAGACAGACCATGGNCCCTCGNACAGCTCCAGCAGCACGTCGC 180
consensus_7919#4 ------------------------------------------------------------
consensus_7919#3 GGGCTCGGACGCCAGGGCATGGTCGAGACGACGTTCACCACGAACGTGACGGCGGCCGAA 126
consensus_7919#0 ACCGATCTCACAGTCGCTAAAATTAACTCCATGTTTCCCACCGTGCCGGAA-------AC 590
consensus_7919#1 ACCGATCTCACGGTCGCTAAAATTAACTCCATGTTTCCCACCGTGCCGGAA-------AC 242
consensus_7919#2 AGCAGCATAACAGCGTTTGAAGGCATTAATCTGAGCAGAAGCGTGCAGTGA-------AA 233
consensus_7919#4 ------------------------------------------------------------
consensus_7919#3 ACCGATCTCACGGTCGCTAAAATTAACTCCATTGTTAGGAAAAGGCAGTGCTATTGATGA 186
consensus_7919#0 CCACATCCGGATGCTGCTGAAGAAGTACTACAACCGTGAGGCGGTCGTAATAAGCGCCCT 650
consensus_7919#1 CCACATCCGGATGCTGCTGAAGAAGTACTACAACCGTGAGGCGGTCGTAATAAGCGCCCT 302
consensus_7919#2 AGCATGTCCGAGCAAATGGAGCAAGTAGGGCTACCGCCCGGTTGGGATTGTAAATACGAT 293
consensus_7919#4 ------------------------------------------------------------
consensus_7919#3 GTCCAACCCGGACGTATAAACGAGATGAAGTGAAATGACAGCTAGGGAAAGTGACAGATG 246
consensus_7919#0 GCAGGTGGAGAAGCATCCGCTAACGACGCCCGGCCCGTACTCGACGCCACCGCTCGGCCA 710
consensus_7919#1 GCAGGTGGAGAAGCATCCGCTAACGACGCCCGGCCCGTACTCGACGCCACCGCTCGGCCA 362
consensus_7919#2 TCCAG--AACAGGTCGCTACTA-CTACGTGAACCCTGTTCACCAAAACGACGCAATGGGA 350
consensus_7919#4 -------------TCGCTGTCA-TTTCATCTGTCACATACACAA----GCTGTCATTTCA 42
consensus_7919#3 AAATGACAGGGAAACGGTTGCACGCGCTTCAAACCAGTA-GCGAGTGAAGCG-AGCAGCA 304
* * * * * * * *
consensus_7919#0 CCGGCCCTTCCACAACACGGCGATGGGCGTCGTGTCCGCGTTCCAGATGACGCCCGTGCT 770
consensus_7919#1 CCGGCCCTTCCACAACACGGCGATGGGCGTCGTGTCCGCGTTCCAGATGACGCCCGTGCT 422
consensus_7919#2 GGATCCGCGGGNCANAAGATACGCAAACAGCAAAACTNNAGCACCAAC--TTCACATCTC 408
consensus_7919#4 CTTCATCTCGTTTATACG-TCCGGGTTGGACTCATCAATAGCACTGCC--TTTTCCTAAC 99
consensus_7919#3 GGTGACACCGTTTTAAAGTTTTATTGCTATTTTATTTGGATT--TATTTGTATTTGTCTT 362
*
consensus_7919#0 CGGCGGGCGCAGTGAGATGTCCAGCTCGCGCACCGGCAGCCCGGTACCGCGTCCGGCCAG 830
consensus_7919#1 CGGCGGGCGCAGTGAGATGTCCAGCTCGCGCACCGGCAGCCCGGTACCGCGTCCGGCCAG 482
consensus_7919#2 AAAACGATANCATTTTCCATGCAGCCAGTGCATGGNNCTCCCTATCATGTGTACCCCGCC 468
consensus_7919#4 AGGGAGGGAAT------------------------------------------------- 110
consensus_7919#3 CAGGAGAATAAATAGTTAAACTAAAAAAAA------------------------------ 392
*
consensus_7919#0 CGGTGCCAGCGGCAGCTACGCCGGCGGATACGGATCGCCCCGGAA-CGGACCGGCGGACG 889
consensus_7919#1 CGGTGCCAGCGGCAGCTACGCCGGCGGATACGGATCGCCCCGGAAACGGACCGGCGGACG 542
consensus_7919#2 AGTAACTCGTTCTATCCA------------------------------------------ 486
consensus_7919#4 ------------------------------------------------------------
consensus_7919#3 ------------------------------------------------------------
consensus_7919#0 GG-TATCGCAGCT-CGCCGAAGCCCCACTCGTCGCCGAAGATGAAGCTGAGGTACATGAA 947
consensus_7919#1 GGGTATCGCAGCTTCGCCG----------------------------------------- 561
consensus_7919#2 ------------------------------------------------------------
consensus_7919#4 ------------------------------------------------------------
consensus_7919#3 ------------------------------------------------------------
consensus_7919#0 GAGCATCTTCCCGAAGGCGGAGGAAACGCTCATCCTGGACGTGCTGGCC 996
consensus_7919#1 -------------------------------------------------
consensus_7919#2 -------------------------------------------------
consensus_7919#4 -------------------------------------------------
consensus_7919#3 -------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||