cluster # 792

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Anopheles gambiae
cluster # 792 cluster # 792 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_792#0 length = 952 sequences # 1

consensus_792#1 length = 453 sequences # 1

consensusID : consensus_792#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 952
fasta sequence

                              [GGCCAAGAATCGGCACGATGGGCGTCACGGCAGCAGTGCAGGCTAAAACTACTACTCGTTCCGCAATGGCCCTACCGATCGCGTTGTATCTGTGCGTCAGTGTGGTGTGTTTGCTGGTGCTTTGGATACGGCGACAGCGCAACTACTGGTCCACTCGCAATGTACCGACCATACCGGGCCACTTTCTGCTGGGGAACTTTGAGGGGCTGCGCCGGCAATCCGTCGCGGACGTGTCGAACGAGCTGTACCGCAGGTGGACCGGCGGGAACGGTTCTGCGGCCTGTCGATCATGCTGCAGCCTACCCTGATGATCACCGATCTGGACCTGATCAAGTCGGTGCTGATCAAAGACTTTGCCCACTTTACCGATCACGGTGTGTACCATAACGAGCGTGTCGATGCCCTGTCCTGCCATCTGTTCTGTCTTGAGGGTGCCAAGTGGAAGAGCATCCGGGTCGGAAAACTGTCGGCCGGCCTTTACGGACCCGGGACGGGATCCCGGGCGAATGTTTTNCCCATTCCTGCGGGCAGGTGGGCCGACAAACTTTTGCCCACATTTTCTACCGGGACGGAAGTCGGACNGGGTAAAGGGCGGGNNAAGCCTTGGACTATGAACGGGACTTGGCTGGTTGGCGGCGCCATGATCGGANTCGATTAACCATTGGGCCCGGAGATGTGCNGGTATCACAGGGNGACATTCGAAAGGTTGGTAACACAACNGNGCTCTTTCCACAACCCGGAAAGGCCCCCGGGGGAAACCAAGGGTGAGNCGAGGTTTACCACCNGGGCCCGAGGGAACACACGGGGTATTGAAAAGNCCACTCGGGGANCAGGNTACCGCGGACAGTGTAAAAGAGAGCCGNGAGGNGCCCACAGATNCCCGGAGCAACNCGGGGGCTATAGGGTCAGGAANAGCCANACNGCCATTTNGCGGGACCACCGGACCAACGAT]

[+] EMBL BX467157             [GGCCAAGAATCGGCACGATGGGCGTCACGGCAGCAGTGCAGGCTAAAACTACTACTCGTTCCGCAATGGCCCTACCGATCGCGTTGTATCTGTGCGTCAGTGTGGTGTGTTTGCTGGTGCTTTGGATACGGCGACAGCGCAACTACTGGTCCACTCGCAATGTACCGACCATACCGGGCCACTTTCTGCTGGGGAACTTTGAGGGGCTGCGCCGGCAATCCGTCGCGGACGTGTCGAACGAGCTGTACCGCAGGTGGACCGGCGGGAACGGTTCTGCGGCCTGTCGATCATGCTGCAGCCTACCCTGATGATCACCGATCTGGACCTGATCAAGTCGGTGCTGATCAAAGACTTTGCCCACTTTACCGATCACGGTGTGTACCATAACGAGCGTGTCGATGCCCTGTCCTGCCATCTGTTCTGTCTTGAGGGTGCCAAGTGGAAGAGCATCCGGGTCGGAAAACTGTCGGCCGGCCTTTACGGACCCGGGACGGGATCCCGGGCGAATGTTTTNCCCATTCCTGCGGGCAGGTGGGCCGACAAACTTTTGCCCACATTTTCTACCGGGACGGAAGTCGGACNGGGTAAAGGGCGGGNNAAGCCTTGGACTATGAACGGGACTTGGCTGGTTGGCGGCGCCATGATCGGANTCGATTAACCATTGGGCCCGGAGATGTGCNGGTATCACAGGGNGACATTCGAAAGGTTGGTAACACAACNGNGCTCTTTCCACAACCCGGAAAGGCCCCCGGGGGAAACCAAGGGTGAGNCGAGGTTTACCACCNGGGCCCGAGGGAACACACGGGGTATTGAAAAGNCCACTCGGGGANCAGGNTACCGCGGACAGTGTAAAAGAGAGCCGNGAGGNGCCCACAGATNCCCGGAGCAACNCGGGGGCTATAGGGTCAGGAANAGCCANACNGCCATTTNGCGGGACCACCGGACCAACGAT]




>consensus_792#0
GGCCAAGAATCGGCACGATGGGCGTCACGGCAGCAGTGCAGGCTAAAACTACTACTCGTT
CCGCAATGGCCCTACCGATCGCGTTGTATCTGTGCGTCAGTGTGGTGTGTTTGCTGGTGC
TTTGGATACGGCGACAGCGCAACTACTGGTCCACTCGCAATGTACCGACCATACCGGGCC
ACTTTCTGCTGGGGAACTTTGAGGGGCTGCGCCGGCAATCCGTCGCGGACGTGTCGAACG
AGCTGTACCGCAGGTGGACCGGCGGGAACGGTTCTGCGGCCTGTCGATCATGCTGCAGCC
TACCCTGATGATCACCGATCTGGACCTGATCAAGTCGGTGCTGATCAAAGACTTTGCCCA
CTTTACCGATCACGGTGTGTACCATAACGAGCGTGTCGATGCCCTGTCCTGCCATCTGTT
CTGTCTTGAGGGTGCCAAGTGGAAGAGCATCCGGGTCGGAAAACTGTCGGCCGGCCTTTA
CGGACCCGGGACGGGATCCCGGGCGAATGTTTTNCCCATTCCTGCGGGCAGGTGGGCCGA
CAAACTTTTGCCCACATTTTCTACCGGGACGGAAGTCGGACNGGGTAAAGGGCGGGNNAA
GCCTTGGACTATGAACGGGACTTGGCTGGTTGGCGGCGCCATGATCGGANTCGATTAACC
ATTGGGCCCGGAGATGTGCNGGTATCACAGGGNGACATTCGAAAGGTTGGTAACACAACN
GNGCTCTTTCCACAACCCGGAAAGGCCCCCGGGGGAAACCAAGGGTGAGNCGAGGTTTAC
CACCNGGGCCCGAGGGAACACACGGGGTATTGAAAAGNCCACTCGGGGANCAGGNTACCG
CGGACAGTGTAAAAGAGAGCCGNGAGGNGCCCACAGATNCCCGGAGCAACNCGGGGGCTA
TAGGGTCAGGAANAGCCANACNGCCATTTNGCGGGACCACCGGACCAACGAT

consensusID : consensus_792#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 453
fasta sequence

                              [CCGCTGGTCCACTCGCAATGTACCGACCATACCGGGCCACTTTCTGCTGGGGAACTTTGAGGGGCTGCGCCGGCAATCCGTCGCGGACGTGTCGAATGAGCTGTATCGCCAGGTGGACCGGCGGGAACGATTCTGCGGCCTGTCGATCATGCTGCAGCCTACCCTGATGATCACCGATCTGGACCTGATCAAGTCGGTGCTGATCAAAGACTTTGCCCACTTTACCGATCACGGTGTGTACCATAACGAGCGTGTCGATGTCCTATCCTGCCATCTCTTCTGTCTCGAGGGTGCCAAGTGGAAGAGCATCCGGTCGAAACTGTCGCCCGCCTTTACGACCGGTCGGATCAGGGCGATGTTTCCCATCCTGCGGCAGGTGGCCGACAACTTCGCCCACTTTCTCCGGACGGAAGTCGATGGTAAAGGCGGAGCTGGATATGAAAGGATTGCTGT]

[+] EMBL BM645484             [CCGCTGGTCCACTCGCAATGTACCGACCATACCGGGCCACTTTCTGCTGGGGAACTTTGAGGGGCTGCGCCGGCAATCCGTCGCGGACGTGTCGAATGAGCTGTATCGCCAGGTGGACCGGCGGGAACGATTCTGCGGCCTGTCGATCATGCTGCAGCCTACCCTGATGATCACCGATCTGGACCTGATCAAGTCGGTGCTGATCAAAGACTTTGCCCACTTTACCGATCACGGTGTGTACCATAACGAGCGTGTCGATGTCCTATCCTGCCATCTCTTCTGTCTCGAGGGTGCCAAGTGGAAGAGCATCCGGTCGAAACTGTCGCCCGCCTTTACGACCGGTCGGATCAGGGCGATGTTTCCCATCCTGCGGCAGGTGGCCGACAACTTCGCCCACTTTCTCCGGACGGAAGTCGATGGTAAAGGCGGAGCTGGATATGAAAGGATTGCTGT]




>consensus_792#1
CCGCTGGTCCACTCGCAATGTACCGACCATACCGGGCCACTTTCTGCTGGGGAACTTTGA
GGGGCTGCGCCGGCAATCCGTCGCGGACGTGTCGAATGAGCTGTATCGCCAGGTGGACCG
GCGGGAACGATTCTGCGGCCTGTCGATCATGCTGCAGCCTACCCTGATGATCACCGATCT
GGACCTGATCAAGTCGGTGCTGATCAAAGACTTTGCCCACTTTACCGATCACGGTGTGTA
CCATAACGAGCGTGTCGATGTCCTATCCTGCCATCTCTTCTGTCTCGAGGGTGCCAAGTG
GAAGAGCATCCGGTCGAAACTGTCGCCCGCCTTTACGACCGGTCGGATCAGGGCGATGTT
TCCCATCCTGCGGCAGGTGGCCGACAACTTCGCCCACTTTCTCCGGACGGAAGTCGATGG
TAAAGGCGGAGCTGGATATGAAAGGATTGCTGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_792#0      GGCCAAGAATCGGCACGATGGGCGTCACGGCAGCAGTGCAGGCTAAAACTACTACTCGTT 60
consensus_792#1      ------------------------------------------------------------
                                                                                 

consensus_792#0      CCGCAATGGCCCTACCGATCGCGTTGTATCTGTGCGTCAGTGTGGTGTGTTTGCTGGTGC 120
consensus_792#1      ------------------------------------------------------------
                                                                                 

consensus_792#0      TTTGGATACGGCGACAGCGCAACTACTGGTCCACTCGCAATGTACCGACCATACCGGGCC 180
consensus_792#1      ----------------------CCGCTGGTCCACTCGCAATGTACCGACCATACCGGGCC 38
                                           *  ***********************************

consensus_792#0      ACTTTCTGCTGGGGAACTTTGAGGGGCTGCGCCGGCAATCCGTCGCGGACGTGTCGAACG 240
consensus_792#1      ACTTTCTGCTGGGGAACTTTGAGGGGCTGCGCCGGCAATCCGTCGCGGACGTGTCGAATG 98
                     ********************************************************** *

consensus_792#0      AGCTGTACCGC-AGGTGGACCGGCGGGAACGGTTCTGCGGCCTGTCGATCATGCTGCAGC 299
consensus_792#1      AGCTGTATCGCCAGGTGGACCGGCGGGAACGATTCTGCGGCCTGTCGATCATGCTGCAGC 158
                     ******* *** ******************* ****************************

consensus_792#0      CTACCCTGATGATCACCGATCTGGACCTGATCAAGTCGGTGCTGATCAAAGACTTTGCCC 359
consensus_792#1      CTACCCTGATGATCACCGATCTGGACCTGATCAAGTCGGTGCTGATCAAAGACTTTGCCC 218
                     ************************************************************

consensus_792#0      ACTTTACCGATCACGGTGTGTACCATAACGAGCGTGTCGATGCCCTGTCCTGCCATCTGT 419
consensus_792#1      ACTTTACCGATCACGGTGTGTACCATAACGAGCGTGTCGATGTCCTATCCTGCCATCTCT 278
                     ****************************************** *** *********** *

consensus_792#0      TCTGTCTTGAGGGTGCCAAGTGGAAGAGCATCCGGGTCGGAAAACTGTCGGCCGGCCTTT 479
consensus_792#1      TCTGTCTCGAGGGTGCCAAGTGGAAGAGCATCCGG-TCG--AAACTGTCGCCCG-CCTTT 334
                     ******* *************************** ***  ********* *** *****

consensus_792#0      ACGGACCCGGGACGGGATCCCGGGCGAATGTTTTNCCCATTCCTGCGGGCAGGTGGGCCG 539
consensus_792#1      ACGACC----GGTCGGATCA-GGGCGA---TGTTTCCCAT-CCTGCGG-CAGGTGG-CCG 383
                     ***  *    *   *****  ******   * ** ***** ******* ******* ***

consensus_792#0      ACAAACTTTTGCCCACATTTTCTACCGGGACGGAAGTCGGACNGGGTAAAGGGCGGGNNA 599
consensus_792#1      ACAA--CTTCGCCCACTTTCTCC----GGACGGAAGTCG---ATGGTAAAGGCGGAGCTG 434
                     ****   ** ****** ** **     ************     ********  * *   

consensus_792#0      AGCCTTGGACTATGAACGGGACTTGGCTGGTTGGCGGCGCCATGATCGGANTCGATTAAC 659
consensus_792#1      GATATGAAAGGATTGCTGT----------------------------------------- 453
                         *   *  **    *                                          

consensus_792#0      CATTGGGCCCGGAGATGTGCNGGTATCACAGGGNGACATTCGAAAGGTTGGTAACACAAC 719
consensus_792#1      ------------------------------------------------------------
                                                                                 

consensus_792#0      NGNGCTCTTTCCACAACCCGGAAAGGCCCCCGGGGGAAACCAAGGGTGAGNCGAGGTTTA 779
consensus_792#1      ------------------------------------------------------------
                                                                                 

consensus_792#0      CCACCNGGGCCCGAGGGAACACACGGGGTATTGAAAAGNCCACTCGGGGANCAGGNTACC 839
consensus_792#1      ------------------------------------------------------------
                                                                                 

consensus_792#0      GCGGACAGTGTAAAAGAGAGCCGNGAGGNGCCCACAGATNCCCGGAGCAACNCGGGGGCT 899
consensus_792#1      ------------------------------------------------------------
                                                                                 

consensus_792#0      ATAGGGTCAGGAANAGCCANACNGCCATTTNGCGGGACCACCGGACCAACGAT 952
consensus_792#1      -----------------------------------------------------