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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7921#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1865 fasta sequence
[CATATAGTTTGTANTTGTTTACTTCTTTTTGTTACTAATTAATTGTACTAGTTCCTTTGGGTGGGCGATTTTGTTTGTTTGGGGCGGTAAATGTGTGTGTTTTTTTTTTAATCAACACTGTTCTGCTCGGCCGTGATGATGATGATGCCCCAGAGCAGAGTGAAAGGGAACCATTTATGTATCCTGTTCCTTATTCATTCGTGTGTTTGTGTGTGCGTGCGTGCGTGTGTGTGTATGTGCGTACATTACAATTGCGCGACGATTGCTTCGCAGTCGGAAGTAGTATTAGTTTTATAAATTTGTTTAATTTGTTTTTTTTTTTTGTATTTTTGTTTTTTGCTCCGACGCTGTGCAACGTCATCCTCCCTTTCGCATAGCTATAATTTAACACACCCATATCACGAACGTCAAACGTTCCGTGTGCTAATACCCCAGGGGGGAGGTGAATTGTACGTGAATTGTGANAGTGGGTGTGTGGCGNGTGTGGCAAGTGTGTGTGTGTGTGANTTGGTGTTTGATATTTCTAGTTCAGTTTTCATTTTGACAGCCGCCTCCACTCCTCGCCGCCACCAACCCGATTTCAAAGTAAGAACTCTTCACCCTTCCTCCCCCCCCCCCTCTCCCTTCTTTATTAAATGCATAATATAAATATATATATTTAAAACAAACCTATATGAATATATCAAAATCGTAAAAGAAGAAACGACGAAACCACTAAGCAAGCAACACACACACACACATACTTTCATCCTATAGATAAATTACATCAATTCCTTCGAAAAAAAACAAGAAAGAAAACAAAACAAATACAAGAAGTAGCACGGTGAAAGTAGCGTTTAAACAATTGGGTACAGAAAGGGAATTATCTTAAATCTCTTAGTACTGTAATTGAATCTGTGTTCTGTTTTCTATTGGTGCGTTCTGTGTGGGGTTCAAAACGCACCGACACGCAAAAACCGCCCTTCTCAGGGGAAAGCGAGAGTAAGGGCGTTTCCGTGCGCGCGCGCGCGCGTGTGTATGTGTGTTTGTAGAGTGGGAAATAAATAAACAAAAC-AAAAAAGTCAAGAAAAATCATTCTTCGAAATCAGAATTAGTCATTACCTAGCAACGGGAAGCAAAGTTATCCGCACTGGTCGGAGCCATAGTAGTTGAAGCACGTGAAAAGTGAGAAGAGTAAGACGAAACAAACAAACAAACAAAC--AAAAACAAGGGAATGGTGAATAAGCGGGGGAGGTGGGGTATATGAAGTGAGCATGGAGGACGAGGAAGAGAGGAAAGAAG-AAAAAAATACTTATAACAAATAATCTTATGGTTGATAAAAATATTTACATATTATTTCTAAGAAACACAACAACAACAAAACCAACT--AAAAAAAAATTAAAGAACTATTGAACAAAACAAAACAACAAACACATAAAATCTGAAATTCGCCACGTGGACGAACAACAGTTGGTGTACGTGATTAACGAGAAGGTAGCAGAAAGGTAGTCCCGAGGAAAACGGCAAAGCATATAACACACTCATAATCAGTGAACAAGCTCCCT-GGCAAGGCGAACGTAGAAAACACAAACACACTCTAAAAACGAACAAATGAGAGGAAAGAAGAAAAAAAATACTTATAACAAATAATCTTATGGTTGATAAAAATATTTACATATTATTTCTAAGAAACACAACAACAACAAAACCAACTAAAAAAAAAAATTAAAGAACTTTTGAACAAAACAAAACAACAAACACAAAGGATCTGAAATTCGCCACGTGGACGAACAACAGTTGGTGTACGTGATTGATGAGAAGGAAGCAGTAAGGTAGTCCCAAGGAAAACGGCAAAGCATAACACACTCATAACCAGTGAATAAACG]
[+] EMBL BX626286 [CATATAGTTTGTANTTGTTTACTTCTTTTTGTTACTAATTAATTGTACTAGTTCCTTTGGGTGGGCGATTTTGTTTGTTTGGGGCGGTAAATGTGTGTGTTTTTTTTTTAATCAACACTGTTCTGCTCGGCCGTGATGATGATGATGCCCCAGAGCAGAGTGAAAGGGAACCATTTATGTATCCTGTTCCTTATTCATTCGTGTGTTTGTGTGTGCGTGCGTGCGTGTGTGTGTATGTGCGTACATTACAATTGCGCGACGATTGCTTCGCAGTCGGAAGTAGTATTAGTTTTATAAATTTGTTTAATTTGTTTTTTTTTTTTGTATTTTTGTTTTTTGCTCCGACGCTGTGCAACGTCATCCTCCCTTTCGCATAGCTATAATTTAACACACCCATATCACGAACGTCAAACGTTCCGTGTGCTAATACCCCAGGGGGGAGGTGAATTGTACGTGAATTGTGANAGTGGGTGTGTGGCGNGTGTGGCAAGTGTGTGTGTGTGTGANTTGGTGTTTGATATTTCTAGTTCAGTTTTCATTTTGACAGCCGCCTCCACTCC ]
[+] EMBL BM621220 [ ccgGATATTTCTAGTTCAGTTTTCATTTTGACAGCCGCCTCCACTCCTCGCCGCCACCAACCCGATTTCAAAGTAAGAACTCTTCACCCTTCCTCCCCCCCCCCCTCTCCCTTCTTTATTAAATGCATAATATAAATATATATATTTAAAACAAACCTATATGAATATATCAAAATCGTAAAAGAAGAAACGACGAAACCACTAAGCAAGCAACACACACACACACATACTTTCATCCTATAGATAAATTACATCAATTCCTTCGAAAAAAAACAAGAAAGAAAACAAAACAAATACAAGAAGTAGCACGGTGAAAGTAGCGTTTAAACAATTGGGTACAGAAAGGGAATTATCTTAAATCTCTTAGTACTGTAATTGAATCTGTGTTCTGTTTTCTATTGGTGCGTTCTGTGTGGGGTTCAAAACGCACCGACACGCAAAAACCGCCCTTCTCAGGGGAAAGCGAGAGTAAGGGCGTTTCCGTGCGCGCGCGCGCGCGTGTGTATGTGTGTTTGTAGAGTGGGAAATAAATAAACAAAAC AAAAAAGTCAAGAAAAATCATTCTTCGAAATCAGAATTAGTCATTACCTAGCAACGGGAAGCAAAGTTATCCGCACTGGTCGGAGCCATAGTAGTTGAAGCACGTGAAAAGTGAGAAGAGTAAGACGAAACAAACAAA ]
[+] EMBL BM605895 [ ccgcaAAACGACGAAACCACTAAGCAAGCAACACACACACACACATACTTTCATCCTATAGATAAATTACATCAATTCCTTCGAAAAAAAACAAGAAAGAAAACAAAACAAATACAAGAAGTAGCACGGTGAAAGTAGCGTTTAAACAATTGGGTACAGAAAGGGAATTATCTTAAATCTCTTAGTACTGTAATTGAATCTGTGTTCTGTTTTCTATTGGTGCGTTCTGTGTGGGGTTCAAAACGCACCGACACGCAAAAACCGCCCTTCTCAGGGGAAAGCGAGAGTAAGGGCGTTTCCGTGCGCGCGCGCGCGCGTGTGTATGTGTGTTTGTAGAGTGGGAAATAAATAAACAAAAC AAAAAAGTCAAGAAAAATCATTCTTCGAAATCAGAATTAGTCATTACCTAGCAACGGGAAGCAAAGTTATCCGCAGTGGTCGGAGCCATAGTAGTTGAAGCACGTGAAAAGTGAGAAGAGTAAGACGAAACAAACAAACAAACAAAC AAAAACAAGGGAATGGTGAATAAGCGGGGGAGGTGGGGTATATGAAGTGAGCATGGAGGACGAGGAAGAGAGGAAAGAAGAAAAAAAATACTTATAACAAAT ]
[+] EMBL BX615180 [ AAAAAACAAGAAAGAAAACAAAACAAATACAAGAAGTAGCACGGTGAAAGTAGCGTTTAAACAATTGGGTACAGAAAGGGAATTATCTTAAATCTCTTAGTACTGTAATTGAATCTGTGTTCTGTTTTCTATTGGTGCGTTCTGTGTGGGGTTCAAAACGCACCGACACGCAAAAACCGCCCTTCTCAGGGGAAAGCGAGAGTAAGGGCGTTTCCGTGCGCGCGCGCGCGCGTGTGTATGTGTGTTTGTAGAGTGGGAAATAAATAAACAAAACAAAAAAAGTCAAGAAAAATCATTCTTCGAAATCAGAATTAGTCATTACCTAGCAACGGGAAGCAAATTTATCCGCACTGGTCGGAGCCATAGTAGTTGAAGCACGTGAAAAGTGAGAAGAGTAAGACGAAACAAACAAACAAACAAAC AAAAACAAGGGAATGGTGAATAAGCGGGGGAGGTGGGGTATATGAAGTGAGCATGGAGGACGAGGAAGAGAGTAAAGAAGAAAAAAAATACTTATAACAAATAATCTTATGGTTGATAAAAATATTTACATATTATTTCTAAGAAACACAACAACAAC ]
[+] EMBL BX618678 [ AGTCAAGAAAAATCATTCTTCGAAATCAGAATTAGTCATTACCTAGCAACGGGAAGCAAAGTTATCCGCACTGGTCGGAGCCATAGTAGTTGAAGCACGTGAAAAGTGAGAAGAGT ]
[+] EMBL BM628194 [ ccgGCAAAGTTATCCGCACTGGTCGGAGCCATAGTAGTTGAAGCACGTGAAAAGTGAGAAGAGTAAGACGAAACAAACAAACAAACAAACAAAAAAACAAGGGAATGGTGAATAAGCGGGGGAGGTGGGGTATATGAAGTGAGCATGGAGGACGAGGAAGAGAGGAAAGAAG AAAAAAATACTTATAACAAATAATCTTATGGTTGATAAAAATATTTACATATTATTTCTAAGAAACACAACAACAACAAAACCAACT AAAAAAAAATTAAAGAACTATTGAACAAAACAAAACAACAAACACATAAAATCTGAAATTCGCCACGTGGACGAACAACAGTTGGTGTACGTGATTAACGAGAAGGTAGCAGAAAGGTAGTCCCGAGGAAAACGGCAAAGCATATAACACACTCATAATCAGTGAACAAGCTCCCT GGCAAGGCGAACGTAGAAAACACAAACACACTCTAAAAACGA ]
[+] EMBL BX614836 [ AAATACTTATAACAAATAATCTTATGGTTGATAAAAATATTTACATATTATTTCTAAGAAACACAACAACAACAAAACCAACTAAAAAAAAAAATTAAAGAACTTTTGAACAAAACAAAACAACAAACACAAAGGATCTGAAATTCGCCACGTGGACGAACAACAGTTGGTGTACGTGATTGATGAGAAGGAAGCAGTAAGGTAGTCCCAAGGAAAACGGCAAAGC ATAACACACTCATAATCAGTGAAGAAGCTCCCTAGGCAAGGCGAACGTAGAAAACACAAACACACTCTAAAAACAAACAAATGAGAGGAAAGAAGAAAAAAAATACTTATAACAAATAATCTTATGGTTGATAAAAATATTTACATATTATTTCTAAGAAACACAACAACAACAAAACCAACTAAAAAAAAAAATTAAAGAACTTTTGAACAAAACAAAACAACAAACACAAAGGATCTGAAATTCGCCACGTGGACGAACAACAGTTGGTGTACGTGATTGATGAGAAGGAAGCAGTAAGGTAGTCCCAAGGAAAACGGCAAAGCATAACACACTCATAACCAGTGAATAAACG]
consensusID : consensus_7921#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 568 fasta sequence
[CCGCCCACGCGTCCGAAGAAACACAACAACAACAAAACCAACTAAAAAAAAAATTAAAGAACTATTGAACAAAACAAAACAACAAACACATAAAATCTGAAATTCGCCACGTGGACGAACAACAGTTGGTGTACGTGATTAACGAGAAGGTAGCAGAAAGGTAGTCCCGAGGAAAACGGCAAAGCATATAACACACTCATAATCAGTGAACAAGCTCCCTGGCAAGGCGAACGTAGAAAACACAAACACACTCTAAAAACAAACAAATGAGAGAAAAAAAAACAAAACAAAACAAGAAGATAGGAAGAGAAACAGTCCCCCCCCTTTTTTGTACTAATTCAACTATTCCAGTGAATAAACGAAGAAAACATACCTTAGTGCGTATGTTTCTCTGTGTGTGTGTGTGTGAATGAAGATTACTAAAGTGGTAAAATGCGGGGAAGGTATGTACTTGACATTATACATCATATTGATATATGCCTAAACATATACAAAACCAACAACTCTCCTCCAACACAGCACACACACACACATACACTCGTACTTACTACCATCGGAGCATCAATAA]
[+] EMBL BM643315 [CCGCCCACGCGTCCGAAGAAACACAACAACAACAAAACCAACTAAAAAAAAAATTAAAGAACTATTGAACAAAACAAAACAACAAACACATAAAATCTGAAATTCGCCACGTGGACGAACAACAGTTGGTGTACGTGATTAACGAGAAGGTAGCAGAAAGGTAGTCCCGAGGAAAACGGCAAAGCATATAACACACTCATAATCAGTGAACAAGCTCCCTGGCAAGGCGAACGTAGAAAACACAAACACACTCTAAAAACAAACAAATGAGAGAAAAAAAAACAAAACAAAACAAGAAGATAGGAAGAGAAACAGTCCCCCCCCTTTTTTGTACTAATTCAACTATTCCAGTGAATAAACGAAGAAAACATACCTTAGTGCGTATGTTTCTCTGTGTGTGTGTGTGTGAATGAAGATTACTAAAGTGGTAAAATGCGGGGAAGGTATGTACTTGACATTATACATCATATTGATATATGCCTAAACATATACAAAACCAACAACTCTCCTCCAACACAGCACACACACACACATACACTCGTACTTACTACCATCGGAGCATCAATAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7921#0 CATATAGTTTGTANTTGTTTACTTCTTTTTGTTACTAATTAATTGTACTAGTTCCTTTGG 60
consensus_7921#1 ------------------------------------------------------------
consensus_7921#0 GTGGGCGATTTTGTTTGTTTGGGGCGGTAAATGTGTGTGTTTTTTTTTTAATCAACACTG 120
consensus_7921#1 ------------------------------------------------------------
consensus_7921#0 TTCTGCTCGGCCGTGATGATGATGATGCCCCAGAGCAGAGTGAAAGGGAACCATTTATGT 180
consensus_7921#1 ------------------------------------------------------------
consensus_7921#0 ATCCTGTTCCTTATTCATTCGTGTGTTTGTGTGTGCGTGCGTGCGTGTGTGTGTATGTGC 240
consensus_7921#1 ------------------------------------------------------------
consensus_7921#0 GTACATTACAATTGCGCGACGATTGCTTCGCAGTCGGAAGTAGTATTAGTTTTATAAATT 300
consensus_7921#1 ------------------------------------------------------------
consensus_7921#0 TGTTTAATTTGTTTTTTTTTTTTGTATTTTTGTTTTTTGCTCCGACGCTGTGCAACGTCA 360
consensus_7921#1 ------------------------------------------------------------
consensus_7921#0 TCCTCCCTTTCGCATAGCTATAATTTAACACACCCATATCACGAACGTCAAACGTTCCGT 420
consensus_7921#1 ------------------------------------------------------------
consensus_7921#0 GTGCTAATACCCCAGGGGGGAGGTGAATTGTACGTGAATTGTGANAGTGGGTGTGTGGCG 480
consensus_7921#1 ------------------------------------------------------------
consensus_7921#0 NGTGTGGCAAGTGTGTGTGTGTGTGANTTGGTGTTTGATATTTCTAGTTCAGTTTTCATT 540
consensus_7921#1 ------------------------------------------------------------
consensus_7921#0 TTGACAGCCGCCTCCACTCCTCGCCGCCACCAACCCGATTTCAAAGTAAGAACTCTTCAC 600
consensus_7921#1 ------------------------------------------------------------
consensus_7921#0 CCTTCCTCCCCCCCCCCCTCTCCCTTCTTTATTAAATGCATAATATAAATATATATATTT 660
consensus_7921#1 ------------------------------------------------------------
consensus_7921#0 AAAACAAACCTATATGAATATATCAAAATCGTAAAAGAAGAAACGACGAAACCACTAAGC 720
consensus_7921#1 ------------------------------------------------------------
consensus_7921#0 AAGCAACACACACACACACATACTTTCATCCTATAGATAAATTACATCAATTCCTTCGAA 780
consensus_7921#1 ------------------------------------------------------------
consensus_7921#0 AAAAAACAAGAAAGAAAACAAAACAAATACAAGAAGTAGCACGGTGAAAGTAGCGTTTAA 840
consensus_7921#1 ------------------------------------------------------------
consensus_7921#0 ACAATTGGGTACAGAAAGGGAATTATCTTAAATCTCTTAGTACTGTAATTGAATCTGTGT 900
consensus_7921#1 ------------------------------------------------------------
consensus_7921#0 TCTGTTTTCTATTGGTGCGTTCTGTGTGGGGTTCAAAACGCACCGACACGCAAAAACCGC 960
consensus_7921#1 ------------------------------------------------------------
consensus_7921#0 CCTTCTCAGGGGAAAGCGAGAGTAAGGGCGTTTCCGTGCGCGCGCGCGCGCGTGTGTATG 1020
consensus_7921#1 ------------------------------------------------------------
consensus_7921#0 TGTGTTTGTAGAGTGGGAAATAAATAAACAAAACAAAAAAGTCAAGAAAAATCATTCTTC 1080
consensus_7921#1 ------------------------------------------------------------
consensus_7921#0 GAAATCAGAATTAGTCATTACCTAGCAACGGGAAGCAAAGTTATCCGCACTGGTCGGAGC 1140
consensus_7921#1 ------------------------------------------------------------
consensus_7921#0 CATAGTAGTTGAAGCACGTGAAAAGTGAGAAGAGTAAGACGAAACAAACAAACAAACAAA 1200
consensus_7921#1 ------------------------------------------------------------
consensus_7921#0 CAAAAACAAGGGAATGGTGAATAAGCGGGGGAGGTGGGGTATATGAAGTGAGCATGGAGG 1260
consensus_7921#1 ------------------------------------------------------------
consensus_7921#0 ACGAGGAAGAGAGGAAAGAAGAAAAAAATACTTATAACAAATAATCTTATGGTTGATAAA 1320
consensus_7921#1 ------------------------------------------------------------
consensus_7921#0 AATATTTACATATTATTTCTAAGAAACACAACAACAACAAAACCAACTAAAAAAAAA-TT 1379
consensus_7921#1 -----CCGCCCACGCGTCCGAAGAAACACAACAACAACAAAACCAACTAAAAAAAAAATT 55
* * * * ************************************* **
consensus_7921#0 AAAGAACTATTGAACAAAACAAAACAACAAACACATAAAATCTGAAATTCGCCACGTGGA 1439
consensus_7921#1 AAAGAACTATTGAACAAAACAAAACAACAAACACATAAAATCTGAAATTCGCCACGTGGA 115
************************************************************
consensus_7921#0 CGAACAACAGTTGGTGTACGTGATTAACGAGAAGGTAGCAGAAAGGTAGTCCCGAGGAAA 1499
consensus_7921#1 CGAACAACAGTTGGTGTACGTGATTAACGAGAAGGTAGCAGAAAGGTAGTCCCGAGGAAA 175
************************************************************
consensus_7921#0 ACGGCAAAGCATATAACACACTCATAATCAGTGAACAAGCTCCCTGGCAAGGCGAACGTA 1559
consensus_7921#1 ACGGCAAAGCATATAACACACTCATAATCAGTGAACAAGCTCCCTGGCAAGGCGAACGTA 235
************************************************************
consensus_7921#0 GAAAACACAAACACACTCTAAAAACGAACAAATGAGAGGAAAGAAGAAAAAAAATACTTA 1619
consensus_7921#1 GAAAACACAAACACACTCTAAAAACAAACAAATGAGAGAAAAAAAAACAAAACAAAACAA 295
************************* ************ *** ** * **** * * *
consensus_7921#0 TAA--CAAATAATCTTATGGTTGATAAAAATATTTACAT-------ATTATTTCTAAGAA 1670
consensus_7921#1 GAAGATAGGAAGAGAAACAGTCCCCCCCCTTTTTTGTACTAATTCAACTATTCCAGTGAA 355
** * * * ** * *** * * **** * ***
consensus_7921#0 -ACACAACAACAACAAAACCAACTAAAAAAAAAAATTAAAGAACTTTTGAACAAAACAAA 1729
consensus_7921#1 TAAACGAAGAAAACATACCTTAGTGCGTATGTTTCTCTGTGTGTGTGTGTGTGAATGAAG 415
* ** * * **** * * * * * * * * ** ** **
consensus_7921#0 ACAACAAACACAAAGGATCTGAAATTCGCCACGTGGACGA------ACAACA-GTTGGTG 1782
consensus_7921#1 ATTACTAAAGTGGTAAAATGCGGGGAAGGTATGTACTTGACATTATACATCATATTGATA 475
* ** ** * * * ** ** *** ** *** *
consensus_7921#0 TACGTGATTGATGAGAAGGAAGCAGTAAGGTAGTCCCAA---GGAAAACGGCAAAGCATA 1839
consensus_7921#1 TATGCCTAAACATATACAAAACCAACAACTCTCCTCCAACACAGCACACACACACACATA 535
** * * * ** ** ** **** * * ** * ****
consensus_7921#0 A---CACACTCATAACCAGTGAATAAACG---- 1865
consensus_7921#1 CACTCGTACTTACTACCATCGGAGCATCAATAA 568
* *** * **** * * * *
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||