cluster # 7935

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Anopheles gambiae
cluster # 7935 cluster # 7935 Sequences # 8 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7935#0 length = 738 sequences # 7

consensus_7935#1 length = 507 sequences # 1

consensusID : consensus_7935#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 738
fasta sequence

                              [CCGCCCACGCGTCCGGAAAAAAACATAATCGGTGAATTTGGTGTGCTCTCAGGAAAAGTATAAATTTATTCCATATTTACCAGCCAAATCGGATAAATTATGGTTGAATCGAAAGCAGAAAAGGCGGAGGTAGGCCGAGAAGATGTCGAAGCCGACAAGGAAAACATGGACGTGGAAGAACCA-GCGGCGGATGCCCCGATGAAAGTGTTTACGGTGGAAATACTTCGTCTGATCAAGGACATGCAGCTACAGCACGGTCTCCGGCATGGCGACTTCCAGCGCTACCGTGGCTACTGCTCCCGGCGCGTCAAGCGGCTCCGCAAAACGCTCAACCTGCCCCAGGGCGACCGGCGCCACTACAAGAAGCGCAACGTGACGCTCGCCAACCTGGAGAAGCCGAACTCGGACGAGCGGTTCCTGCACATCCCGCTCATGCTGGCCGAGCGGACCTGGTCGTACGCGATGCAGCTGCGGCAGGAATCGAACACGGAACCGCGCAAACGGTTCCATCTGATCGAGAAGCTGCGC-AAATCGTGCGTGTACGCGCTGCAGTTGCAGGACCTGTGCGCC-TCGGACCGGTGCGACGCGCGCACGAAGCTGGAGGCGGAAGCGTACTCCGCCTGGATCCATGGTTCGCTGCACTTCGAGCTGGGACTGTGGCAATCGGCGGCAGAAAACCTGAAGAAAGCACAGGTAATTTACGAAAACCTCGCCCAGGCCATGGCCGGAGGAAGAGCA]

[+] EMBL BM599994             [CCGCCCACGCGTCCGGTATAAAACATAATCGGTGAATTTGGTGTGCTCTCAGGAAAAGTATAAATTTATTCCATATTTACCAGCCAAATCGGATAAATTATGGTTGAATCGAAAGCAGAAAAGGTGGAGGTAGGCCGAGAAGATGTCGAAGCCGACAAGGAAAACATGGACGTGGAAGAACCA GCGGCGGATGCCCCGATGAAAGTGTTTACGGTGGAAATACTTCGTCTGATCAAGGACATGCAGCTACAGCACGGTCTCCGGCATGGCGACTTCCAGCGCTACCGTGGCTACTGCTCCCGGCGCGTCAAGCGGCTCCGCAAAACGCTCAACCTGCCCCAGGGCGACCGGCGCCACTACAAGAAGCGCAACGTGACGCTCGCCAACCTGGAGAAGCCGAACTCGGACGAGCGGTTCCTGCACATCCCGCTCATGCTGGCCGAACGGACCTGGTCCTACGCGATGCAGCTGCGGCAGGAATCGAACACGGAACCGCGCAAACGGTTCCATCTGATCGAGAAGCTGCGC AAATCGTGCGTGTACGCGCTGCAGCTGCAGGACCTGTGCGCC TCGGACCGGTGCGACGCGCGCACGAAGCTGGAGGCGGAAGCGTACTCCGCCTGGATCC                                                                                                              ]
[+] EMBL BM590131             [            CCGAAAAAAAACACAATCGGTGAATTTGGTGTGCTCTCAGGAAAAGTATCAATTTATTCCATATTTACCAGCCAAATCGGATAAATTATGGTTGAATCGAAAGCAGAAAAGGCGGAGGTAGGCCGAGAAGATGTCGAAGCCGACAAGGAAAACATGGACGTGGAAGAACCA GCGGCGGATGCCCCGATGAAAGTGTTTACGGTGGAAATACTTCGTCTGATCAAGGACATGCAGCTACAGCACGGTCTCCGGCATGGCGACTTCCAGCGCTACCGTGGCTACTGCTCCCGGCGCGTCAAGCGGCTCCGCAAAACGCTCAACCTGCCCCAGGGCGACCGGCGCCACTACAAGAAGCGCAACGTGACGCTCGCCAACCTGGAGAAGCCGAACTCGGACGAGCGGTTCCTGCACATCCCGCTCATGCTGGCCGAGCGGACCTGGTCCTACGCGATGCAGCTGCGGCAGGAATCGAACACGGAGCCGCGCAAACGGTTCCATCTGATCGAGAAGCTGCGC AAATCGTGCGTGTACGCGCTGCAGCTGCAGGACCTGTGCGCC TCGGACCGGTGCGACGCGCGCACGAAGCTGGAGGCGGAAGCCTACTCCGCCTGGATCCATGGTTCGCTGCACTTCGAGCTGGGACTGTGGCAATCGGCGGCAGAAAACCTGAAAAAAGCACAG                                             ]
[+] EMBL BM587575             [              ccgAAAAAACATAATCGGTGAATTTGGTGTGCTCTCAGGAAAAGTATAAATTTATTCCATATTTACCAGCCAAATCGGATAAATTATGGTTGAATCGAAAGCAGAAAAGGCGGAGGTAGGCCGAGAAGATGTCGAAGCCGACAAGGAAAACATGGACGTGGAAGAACCA GCGGCGGATGCCCCGATGAAAGTGTTTACGGTGGAAATACTTCGTCTGATCAAGGACATGCAGCTACAGCACGGTCTCCGGCATGGCGACTTCCAGCGCTACCGTGGCTACTGCTCCCGGCGCGTCAAGCGGCTCCGCAAAACGCTCAACCTGCCCCAGGGCGACCGGCGCCACTACAAGAAGCGCAACGTGACGCTCGCCAACCTGGAGAAGCCGAACTCGGACGAGCGGTTCCTGCACATCCCGCTCATGCTGGCCGAGCGGACCTGGTCGTACGCGATGCAGCTGCGGCAGGAATCGAACACGGAACCGCGCAAACGGTTCCATCTGATCGAGAAGCTGCGC AAATCGTGCGTGTACGCGCTGCAGTTGCAGGACCTGTGCGCC TCGGACCGGTGCGACGCGCGCACGAAGCTGGAGGCGGAAGCGTACTCCGCCTGGATCCATGGTTCGCTGCACTTCGAGCTGGGACTGTGGCAATCGGCGGCAGAAAACCTGAAGAA                                                    ]
[+] EMBL BM603443             [                          ccgCGGTGAATTTGGTGTGCTCTCAGGAAAAGTATAAATTTATTCCATATTTACCAGCCAAATCGGATAAATTATGGTTGAATCGAAAGCAGAAAAGGCGGAGGTAGGCCGAGAAGATGTCGAAGCCGACAAGGAAAACATGGACGTGGAAGAACCA GCGGCGGATGCCCCGATGAAAGTGTTTACGGTGGAAATACTTCGTCTGATCAAGGACATGCAGCTACAGCACGGTCTCCGGCATGGCGACTTCCAGCGCTACCGTGGCTACTGCTCCCGGCGCGTCAAGCGGCTCCGCAAAACGCTCAACCTGCCCCAGGGCGACCGGCGCCACTACAAGAAGCGCAACGTGACGCTCGCCAACCTGGAGAAGCCGAACTCGGACGAGCGGTTCCTGCACATCCCGCTCATGCTGGCCGAGCGGACCTGGTCGTACGCGATGCAGCTGCGGCAGGAATCGAACACGGAACCGCGCAAACGGTTCCATCTGATCGAGAAGCTGCGC AAATCGTGCGTGTACGCGCTGCAGTTGCAGGACCTGTGCGCC TCGGACCGGTGCGACGCGCGCACGAAGCTGGAGGCGGAAGCGTACTCCGCCTGGATCCATGGTTCGCTGCACTTCGAGCTGGGACTGTGGCAATCGGCGGCAGAAAACCTGAAGA                                                     ]
[+] EMBL BM604485             [                                      TGGTGTGCTCTCAGGAAAAGTATAAATTTATTCCATATTTACCAGCCCAATCGGATAAATTATGGTTGAATCGAAAGCAGAAAAGGCGGAGGTAGGCCGAGAAGATGTCGAAGCCGACAAGGAAAACATGGACGTGGAACAACCACGCGGCGGATGCCCCGATGAAAGTGTTTACGGTGGAAATACTTCGTCTGATCAAGGACATGCAGCTACAGCACGGTCTCCGGCATGGCGACTTCCAGCGCTACCGTGGCTACTGCTCCCGGCGCGTCAAGCGGCTCCGCAAAACGCTCAACCTGCCCCAGGGCGACCGGCGCCACTACAAGAAGCGCAACGTGACGCTCGCCAACCTGGAGAAGCCGAACTCGGACGAGCGGTTCCTGCACATCCCGCTCATGCTGGCCGAACGGACCTGGTCCTACGCGATGCAGCTGCGGCAGGAATCGAACACGGAGCCGCGCAAACGGTTCCATCTGATCGAGAAGCTGCGCAAAATCGTGCGTGTACGCGCTGCAGCTGCAGGACCTGTGCGCC TCGGACTGGTGCGACGCGCGCACGAAGCTGGAGGCGGAAGCGTACTCCGC                                                                                                                      ]
[+] EMBL BM585817             [                                          ccGCTCTCAGGAAAAGTATAAATTTATTCCATATTTACCAGCCAAATCGGATAAATTATGGTTGAATCGAAAGCAGAAAAGGCGGAGGTAGGCCGAGAAGATGTCGAAGCCGACAAGGAAAACATGGACGTGGAAGAACCA GCGGCGGATGCCCCGATGAAAGTGTTTACGGTGGAAATACTTCGTCTGATCAAGGACATGCAGCTACAGCACGGTCTCCGGCATGGCGACTTCCAGCGCTACCGTGGCTACTGCTCCCGGCGCGTCAAGCGGCTCCGCAAAACGCTCAACCTGCCCCAGGGCGACCGGCGCCACTACAAGAAGCGCAACGTGACGCTCGCCAACCTGGAGAAGCCGAACTCGGACGAGCGGTTCCTGCACATCCCGCTCATGCTGGCCGAGCGGACCTGGTCGTACGCGATGCAGCTGCGGCAGGAATCGAACACGGAACCGCGCAAACGGTTCCATCTGATCGAGAAGCTGCGC AAATCGTGCGTGTACGCGCTGCAGTTGCAGGACCTGTGCGCC TCGGACCGGTGCGACGCGCGCACGAAGCTGGAGGCGGAAGCGTACTCCGCCTGGATCCATGGTTCGCTGCACTTCGAGCTGGGACTGTGGCAATCGGCGGCAGAAAACCTGAAGAAAGCGCAGGTAATTTACGAAAACCTCGCCCAGGCCATGGCCGGAGGAAGAGCA]
[+] EMBL BM576036             [                                              ccgCAGGAAAAGTATAAATTTATTCCATATTTACCAGCCAAATCGGATAAATTATGGTTGAATCGAAAGCAGAAAAGGCGGAGGTAGGCCGAGAAGATGTCGAAGCCGACAAGGAAAACATGGACGTGGAAGAACCA GCGGCGGATGCCCCGATGAAAGTGTTTACGGTGGAAATACTTCGTCTGATCAAGGACATGCAGCTACAGCACGGTCTCCGGCATGGCGACTTCCAGCGCTACCGTGGCTACTGCTCCCGGCGCGTCAAGCGGCTCCGCAAAACGCTCAACCTGCCCCAGGGCGACCGGCGCCACTACAAGAAGCGCAACGTGACGCTCGCCAACCTGGAGAAGCCGAACTCGGACGAGCGGTTCCTGCACATCCCGCTCATGCTGGCCGAGCGGACCTGGTCGTACGCGATGCAGCTGCGGCAGGAATCGAACACGGAACCGCGCAAACGGTTCCATCTGATCGAGAAGCTGCGC AAATCGTGCGTGTACGCGCTGCAGTTGCAGGACCTGTGCGCCATCGGACCGGTGCGACGCGCGCACGAAGCTGGAGGCGGAAGCGTACTCCGCCTGGATCCATGGTTCGCTGCA                                                                                                 ]




>consensus_7935#0
CCGCCCACGCGTCCGGAAAAAAACATAATCGGTGAATTTGGTGTGCTCTCAGGAAAAGTA
TAAATTTATTCCATATTTACCAGCCAAATCGGATAAATTATGGTTGAATCGAAAGCAGAA
AAGGCGGAGGTAGGCCGAGAAGATGTCGAAGCCGACAAGGAAAACATGGACGTGGAAGAA
CCAGCGGCGGATGCCCCGATGAAAGTGTTTACGGTGGAAATACTTCGTCTGATCAAGGAC
ATGCAGCTACAGCACGGTCTCCGGCATGGCGACTTCCAGCGCTACCGTGGCTACTGCTCC
CGGCGCGTCAAGCGGCTCCGCAAAACGCTCAACCTGCCCCAGGGCGACCGGCGCCACTAC
AAGAAGCGCAACGTGACGCTCGCCAACCTGGAGAAGCCGAACTCGGACGAGCGGTTCCTG
CACATCCCGCTCATGCTGGCCGAGCGGACCTGGTCGTACGCGATGCAGCTGCGGCAGGAA
TCGAACACGGAACCGCGCAAACGGTTCCATCTGATCGAGAAGCTGCGCAAATCGTGCGTG
TACGCGCTGCAGTTGCAGGACCTGTGCGCCTCGGACCGGTGCGACGCGCGCACGAAGCTG
GAGGCGGAAGCGTACTCCGCCTGGATCCATGGTTCGCTGCACTTCGAGCTGGGACTGTGG
CAATCGGCGGCAGAAAACCTGAAGAAAGCACAGGTAATTTACGAAAACCTCGCCCAGGCC
ATGGCCGGAGGAAGAGCA

consensusID : consensus_7935#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 507
fasta sequence

                              [TGGCTTGGGGGGGGTATAAAAAAAACATAATCGGTGAATTTGGTGTGCTCTCAGGAAAAGTATAAATTTATTCCATATTTACCAGCCCAATCGGATAAATTATGGTTGAATCGAAAGCAGAAAAGGCGGAGGTAGGCCGAGAAGATGTCGAAGCCGACAAGGAAAACATGGACGTGGAAGAACCAGCGGCGGATGCCCCGATGAAAGTGTTTACGGTGGAAATACTTCGTCTGATCAAGGACATGCAGCTACAGCACGGTCTCCGGCATGGCGACTTCCAGCGCTACCGTGGCTACTGCTCCCGGCGCGTCAAGCGGCTCCGCAAAACGCTCAACCTGCCCCAGGGCGACCGGCGCCACTACAAGAAGCGCAACGTGACGCTCGCCAACCTGGAGAAGCCGAACTCGGACGAGCGGTTCCTGCACATCCCGCTCATGCTGGCCGAACGGACCTGGTCCTACGCGATGCAGCTGCGGCAGGAATCGAACACGGAGCCGCGCACACTTT]

[+] EMBL CNS08PRK             [TGGCTTGGGGGGGGTATAAAAAAAACATAATCGGTGAATTTGGTGTGCTCTCAGGAAAAGTATAAATTTATTCCATATTTACCAGCCCAATCGGATAAATTATGGTTGAATCGAAAGCAGAAAAGGCGGAGGTAGGCCGAGAAGATGTCGAAGCCGACAAGGAAAACATGGACGTGGAAGAACCAGCGGCGGATGCCCCGATGAAAGTGTTTACGGTGGAAATACTTCGTCTGATCAAGGACATGCAGCTACAGCACGGTCTCCGGCATGGCGACTTCCAGCGCTACCGTGGCTACTGCTCCCGGCGCGTCAAGCGGCTCCGCAAAACGCTCAACCTGCCCCAGGGCGACCGGCGCCACTACAAGAAGCGCAACGTGACGCTCGCCAACCTGGAGAAGCCGAACTCGGACGAGCGGTTCCTGCACATCCCGCTCATGCTGGCCGAACGGACCTGGTCCTACGCGATGCAGCTGCGGCAGGAATCGAACACGGAGCCGCGCACACTTT]




>consensus_7935#1
TGGCTTGGGGGGGGTATAAAAAAAACATAATCGGTGAATTTGGTGTGCTCTCAGGAAAAG
TATAAATTTATTCCATATTTACCAGCCCAATCGGATAAATTATGGTTGAATCGAAAGCAG
AAAAGGCGGAGGTAGGCCGAGAAGATGTCGAAGCCGACAAGGAAAACATGGACGTGGAAG
AACCAGCGGCGGATGCCCCGATGAAAGTGTTTACGGTGGAAATACTTCGTCTGATCAAGG
ACATGCAGCTACAGCACGGTCTCCGGCATGGCGACTTCCAGCGCTACCGTGGCTACTGCT
CCCGGCGCGTCAAGCGGCTCCGCAAAACGCTCAACCTGCCCCAGGGCGACCGGCGCCACT
ACAAGAAGCGCAACGTGACGCTCGCCAACCTGGAGAAGCCGAACTCGGACGAGCGGTTCC
TGCACATCCCGCTCATGCTGGCCGAACGGACCTGGTCCTACGCGATGCAGCTGCGGCAGG
AATCGAACACGGAGCCGCGCACACTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7935#0      --CCGCCCACGCGTCCGGAAAAAAACATAATCGGTGAATTTGGTGTGCTCTCAGGAAAAG 58
consensus_7935#1      TGGCTTGGGGGGGGTATAAAAAAAACATAATCGGTGAATTTGGTGTGCTCTCAGGAAAAG 60
                         *      * *     ******************************************

consensus_7935#0      TATAAATTTATTCCATATTTACCAGCCAAATCGGATAAATTATGGTTGAATCGAAAGCAG 118
consensus_7935#1      TATAAATTTATTCCATATTTACCAGCCCAATCGGATAAATTATGGTTGAATCGAAAGCAG 120
                      *************************** ********************************

consensus_7935#0      AAAAGGCGGAGGTAGGCCGAGAAGATGTCGAAGCCGACAAGGAAAACATGGACGTGGAAG 178
consensus_7935#1      AAAAGGCGGAGGTAGGCCGAGAAGATGTCGAAGCCGACAAGGAAAACATGGACGTGGAAG 180
                      ************************************************************

consensus_7935#0      AACCAGCGGCGGATGCCCCGATGAAAGTGTTTACGGTGGAAATACTTCGTCTGATCAAGG 238
consensus_7935#1      AACCAGCGGCGGATGCCCCGATGAAAGTGTTTACGGTGGAAATACTTCGTCTGATCAAGG 240
                      ************************************************************

consensus_7935#0      ACATGCAGCTACAGCACGGTCTCCGGCATGGCGACTTCCAGCGCTACCGTGGCTACTGCT 298
consensus_7935#1      ACATGCAGCTACAGCACGGTCTCCGGCATGGCGACTTCCAGCGCTACCGTGGCTACTGCT 300
                      ************************************************************

consensus_7935#0      CCCGGCGCGTCAAGCGGCTCCGCAAAACGCTCAACCTGCCCCAGGGCGACCGGCGCCACT 358
consensus_7935#1      CCCGGCGCGTCAAGCGGCTCCGCAAAACGCTCAACCTGCCCCAGGGCGACCGGCGCCACT 360
                      ************************************************************

consensus_7935#0      ACAAGAAGCGCAACGTGACGCTCGCCAACCTGGAGAAGCCGAACTCGGACGAGCGGTTCC 418
consensus_7935#1      ACAAGAAGCGCAACGTGACGCTCGCCAACCTGGAGAAGCCGAACTCGGACGAGCGGTTCC 420
                      ************************************************************

consensus_7935#0      TGCACATCCCGCTCATGCTGGCCGAGCGGACCTGGTCGTACGCGATGCAGCTGCGGCAGG 478
consensus_7935#1      TGCACATCCCGCTCATGCTGGCCGAACGGACCTGGTCCTACGCGATGCAGCTGCGGCAGG 480
                      ************************* *********** **********************

consensus_7935#0      AATCGAACACGGAACCGCGCAAACGGTTCCATCTGATCGAGAAGCTGCGCAAATCGTGCG 538
consensus_7935#1      AATCGAACACGGAGCCGCGCACACTTT--------------------------------- 507
                      ************* ******* **  *                                 

consensus_7935#0      TGTACGCGCTGCAGTTGCAGGACCTGTGCGCCTCGGACCGGTGCGACGCGCGCACGAAGC 598
consensus_7935#1      ------------------------------------------------------------
                                                                                  

consensus_7935#0      TGGAGGCGGAAGCGTACTCCGCCTGGATCCATGGTTCGCTGCACTTCGAGCTGGGACTGT 658
consensus_7935#1      ------------------------------------------------------------
                                                                                  

consensus_7935#0      GGCAATCGGCGGCAGAAAACCTGAAGAAAGCACAGGTAATTTACGAAAACCTCGCCCAGG 718
consensus_7935#1      ------------------------------------------------------------
                                                                                  

consensus_7935#0      CCATGGCCGGAGGAAGAGCA 738
consensus_7935#1      --------------------