These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7950#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1359 fasta sequence [GACCCACGCGTCCGCCCGCGTCCGTGCGGATTTGGCTCGTGTTTCTTCTACGGGAAAAACAGTTTCTACTTCCAATAAAAGATGGGCAAATCAAAGGCACACCGTATAAAGAAACTCACCGGACCAAAATCGTCCTTTGACGAACAGCCGAACGAAGGCCGCGTGTCCAAGAAAGCAAAACAGCCGAAAATCCGACTGCGCGCCGAGGAAGGCAACTATGTTGACTCGAAAACGTCGAAGAGAATTCTTGCGGTAGCTCGCAAACAACAGGCCGAGCTGAACTTCCTCGACAGCTCCTTTGGGCCGACGCCGCAAGAATCAGCTGCGGTGAAGAAACGGCAACGATTGGACGACAGAGGATCCTCCGACGAGTCTGATCTGGAGGAGCACGATGAAGGCGACATTGATGGAGACAATTTGTTTGACGATATTAAAATCAGCGAGGAAGATGAGCGTGCGCTGCAAATGTTCCAAAACAAAGATGGCACCAAAACACGCACCCTGGCCGATATCATCTTGGAGAAAATGACTGAGAAGCAAACCGAAATTCAAACACAATTCTCCGACAATGCGTCACTCAAGCTGGACGAAATCGACCCGAACGTGCGCGAGATGTACAAGGGCGTGCGGGATGTGCTGAAGCGCTACCGTAACGGCAAAA-TTCCGAAAGCGTTCAAGCTCATCCCCAAGCTGCGCAACTGTGAACAGTTTCTGTACATTACGGAACCGCAGCAGTGGAGTGCGGCTGCCATGTTTCAGGCGACGCGCCTGTTTTGCTCCGGCCTTACCCAGCACATGGCCCAGCGGTTCTACAATCTCGTGCTGCTGCCACGTGTGCGCGACGATTTGGCCGAGTACGGGCGGCTGAATTTCTATCTGTATCGTTCGCTGAAAAAGGCCCTGTTCAAACCGGCCGCCTTTATGAAGGGCATCGTGCTGCCTCTGCTCGAGGCAGGCGACTGCACGCTGCGCGAGGCAATCATCATCGGCAGCGTGATTAGCTGCACGTCCATCCCGGTGCTGCACACGGCCGCGTGTTTGCTGAAAATCTGCGAAATGGAATACTCCGGCGCGTGTTCCGTGTTTATCCGCATCATACTGGACAAACGGTACGCCCTGCCGTACCGTGTGGTCGATGCGGCCGTGTTTCATTTCCTCAAGTTTGAGCAGGATAAGCGGGAGCTGCCCACGCTGTGGCACAAAGCGCTGCTTACGTTTGCCCAGCGCTACAAGAACGACATTTCCTCCGAGCAGCGGGACGCTTTGCTGCATTTGCTGAAGAAAAAATCCCATCCCAAAATCACACCTGAAATTCGCCGCGAACTGCAGGCAGCCCAGTGTCGCGATGTANAAGTTGGC] [+] EMBL BM631093 [GACCCACGCGTCCGCCCACG CGTCCGGATTTGGCTCGTGTTTCTTGTACGGGGAAAACAGTTTCTACTTACAATAAAAGATGGGCAAATCAAAGGCACACCGTATAAAGAAACTCACCGGACCAAAATCGTCCTTTGACGAACAGCCGAACGAAGGCCGCGTGTCCAAGAAAGCAAAACAGCCGAAAATCCGACTGCGCGCCGAGGAAGGCAACTATGTTGACTCGAAAACGTCGAAGAGAATTCTTGCGGTAGCTCGCAAACTACAGGCCGAGCTGAACTTCCTCGACAGCTCCTTTGGGCCGACGCCGCAAGAATCAACTGCGGTGAAGAAACGGCAACGATTGGACGACAGAGGATCCTCCGACGAGTCTGATCTGGAGGAGCACGATGAAGGCGACATTGATGGAGACAATTTGTTTGACGATATTAAAATCAGCGAGGAAGATGAGCGTGCGCTGCAAATGTTCCAAAACAAAGATGGCACCAAAACACGCACTCTGGCCGATATCATCTTGGAGAAAATGACTGAGAAGCAAACCGAGATTCAAACACAATTCTCCGACAACGCGTCTCTCAAGCTGGACGAAATCGACCCGAACGTGCGCGAGATGTAC ] [+] EMBL BM598662 [ CGACC CACGCGTCCG GCGGATTTGGCTCGTGTTTCTTCTACGGGAAAAACAGTTTCTACTTCCAATAAAAGATGGGCAAATCAAAGGCACACCGTATAAAGAAACTCACCGGACCAAAATCGTCCTTTGACGAACAGCCGAACGAAGGCCGCGTGTCCAAGAAAGCAAAACAGCCGAAAATCCGACTGCGCGCCGAGGAAGGCAACTATGTTGACTCGAAAACGTCGAAGAGAATTCTTGCGGTAGCTCGCAAACAACAGGCCGAGCTGAACTTCCTCGACAGCTCCTTTGGGCCGACGCCGCAAGAATCAGCTGCGGTGAAGAAACGGCAACGATTGGACGACAGAGGATCCTCCGACGAGTCTGATCTGGAGGAGCACGATGAAGGCGACATTGATGGAGACAATTTGTTTGACGATATTAAAATCAGCGAGGAAGATGAGCGTGCGCTGCAAATGTTCCAAAACAAAGATGGCACCAAAACACGCACCCTGGCCGATATCATCTTGGAGAAAATGACTGAGAAGCAAACCGAA ] [+] EMBL BM600049 [ CCGCGCCAGTGCGGATTTGGCTCGTGTTTCTTCTACGGGAAAAACAGTTTCTACTTCCAATAAAAGATGGGCAAATCAAAGGCACACCGTATAAAGAAACTCACCGGACCAAAATCGTCCTTTGACGAACAGCCGAACGAAGGCCGCGTGTCCAAGAAAGCAAAACAGCCGAAAATCCGACTGCGCGCCGAGGAAGGCAACTATGTTGACTCGAAAACGTCGAAGAGAATTCTTGCGGTAGCTCGCAAACAACAGGCCGAGCTGAACTTCCTCGACAGCTCCTTTGGGCCGACGCCGCAAGAATCAGCTGCGGTGAAGAAACGGCAACGATTGGACGACAGAGGATCCTCCGACGAGTCTGATCTGGAGGAGCACGATGAAGGCGACATTGATGGAGACAATTTGTTTGACGATATTAAAATCAGCGAGGAAGATGAGCGTGCGCTGCAAATGTTCCAAAACAAAGATGGCACCAAAACACGCACCCTGGCCGATATCATCTTGGAGAAAATGACTGAGAAGCAAACCGAAATTCAAACACAATTCTCCGACAATGCGTCACTCAAGCTGGACGAAATCGACCCGAACGTGCGCGAGATGTACAAGGGCGTGCGGGATGTGCTGAAGCGCT ] [+] EMBL BM594166 [ ccgGGCTCGTGTTTCTTCTACGGGAAAAACAGTTTCTACTTCCAATAAAAGATGGGCAAATCAAAGGCACACCGTATAAAGAAACTCACCGGACCAAAATCGTCCTTTGACGAACAGCCGAACGAAGGCCGCGTGTCCAAGAAAGCAAAACAGCCGAAAATCCGACTGCGCGCCGAGGAAGGCAACTATGTTGACTCGAAAACGTCGAAGAGAATTCTTGCGGTAGCTCGCAAACAACAGGCCGAGCTGAACTTCCTCGACAGCTCCTTTGGGCCGACGCCGCAAGAATCAGCTGCGGTGAAGAAACGGCAACGATTGGACGACAGAGGATCCTCCGACGAGTCTGATCTGGAGGAGCACGATGAAGGCGACATTGATGGAGACAATTTGTTTGACGATATTAAAATCAGCGAGGAAGATGAGCGTGCGCTGCAAATGTTCCAAAACAAAGATGGCACCAAAACACGCACCCTGGCCGATATCATCTTGGAGAAAATGACTGAGAAGCAAACCGAAATTCAAACACAATTCTCCGACAATGCGTCACTCAAGCTGGACGAAATCGACCCGAACGTGCGCGAGATGTACAAGGGCGTGCGGGATGTGCTGAAGCGCTACCGTAACGGCAAAATTTCCGAAAGCGTTCAAGCTCATCCCCAA ] [+] EMBL BM648228 [ ccgGGCTCGTGTTTCTTCTACGGGAAAAACAGTTTCTACTTCCAATAAAAGATGGGCAAATCAAAGGCACACCGTATAAAGAAACTCACCGGACCAAAATCGTCCTTTGACGAACAGCCGAACGAAGGCCGCGTGTCCAAGAAAGCAAAACAGCCGAAAATCCGACTGCGCGCCGAGGAAGGCAACTATGTTGACTCGAAAACGTCGAAGAGAATTCTTGCGGTAGCTCGCAAACAACAGGCCGAGCTGAACTTCCTCGACAGCTCCTTTGGGCCGACGCCGCAAGAATCAGCTGCGGTGAAGAAACGGCAACGATTGGACGACAGAGGATCCTCCGACGAGTCTGATCTGGAGGAGCACGATGAAGGCGACATTGATGGAGACAATTTGTTTGACGATATTAAAATCAGCGAGGAAGATGAGCGTGCGCTGCAAATGTTCCAAAACAAAGATGGCACCAAAACACGCACCCTGGCCGATATCATCTTGGAGAAAATGACTGAGAAGCAAACCGAAATTCAAACACAATTCTCCGACAATGCGTCACTCAAGCTGGACGAAATCGACCCGAA ] [+] EMBL BM647057 [ ccgGCTGCGGTGAAGAAACGGCAACGATTGGACGACAGAGGATCCTCCGACGAGTCTGATCTGGAGGAGCACGATGAAGGCGACATTGATGGAGACAATTTGTTTGACGATATTAAAATCAGCGAGGAAGATGAGCGTGCGCTGCAAATGTTCCAAAACAAAGATGGCACCAAAACACGCACTCTGGCCGATATCATCTTGGAGAAAATGACTGAGAAGCAAACCGAGATTCAAACACAATTCTCCGACAACGCGTCTCTCAAGCTGGACGAAATCGACCCGAACGTGCGCGAGATGTACAAGGGCGTGCGGGATGTGCTGAAGCGCTACCGTAACGGCAAAA TTCCGAAAGCGTTCAAGCTCATCCCCAAGCTGCGCAACTGTGAACAGTTTCTGTACATTACGGAACCGCAGCAGTGGAGTGCGGCTGCCATGTTTCAGGCGACGCGCCTGTTTTGCTCCGGCCTTACCCAGCACATGGCCCAGCGGTTCTACAATCTCGTGCTGCTGCCACGTGTGCGCGACGATTTGGCCGAGTACGGGCGGCTGAATTTCTATCTGTATCGTTCGCTGAAAAAGGCCCTGTTCAAACCGGCCGCCTTTATGAAGGGCATCGTGCTGCCTCTGCTCGAGGCAGGCGACTGCACGCTGCGCGAGGCAATCATCATCGGCAGCGTGATTAGCTGCACGTCCATCCCGG ] [+] EMBL BX625927 [ GAACGTGCGCGAGATGTACAAGGGCGTGCGGGATGTGCTGAAGCGCTACCGTAACGGCAAAA TTCCGAAAGCGTTCAAGCTCATCCCCAAGCTGCGCAACTGGGAACAGTTTCTGTACATTACGGAACCGCAGCAGTGGAGTGCGGCTGCCATGTTTCAGGCGACGCGCCTGTTTTGCTCCGGCCTTACCCAGCACATGGCCCAGCGGTTCTACAATCTCGTGCTGCTGCCACGTGTGCGCGACGATTTGGCCGAGTACGGGCGGCTGAATTTCTATCTGTATCGCTCGCTGAAAAAGGCCCTGTTCAAACCGGCCGCCTTTATGAAGGGAATCGTGCTGCCTCTGCTCGAGGCAGGTGATTGCACGCTGCGCGAGGCAATCATCATCGGCAGCGTGATTAGCTGCACGTCCATCCCGGTGCTGCACACGGCCGCGTGTTTGCTGAAAATCTGCGAAATGGAATACTCCGGCGCGTGTTCCGTGTTTATCCGCATCATACTGGACAAACGGTACGCCCTGCCGTACCGTGTGGTCGATGCGGCCGTGTTTCATTTCCTCAAGTTTGAGCAGGATAAGCGGGAGCTGCCCACGCTGTGGCACAAAGCGCTGCTTACGTTTGCCCAGCGCTACAAGAACGACATTTCCTCCGAGCAGCGGGACGCTTTGCTGCATTTGCTGAAGAAAAAATCCCATCCCAAAATCACACCTGAAATTCGCCGCGAACTGCAGGCAGCCCAGTGTCGCGATGTANAAGTTGGC] consensusID : consensus_7950#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 496 fasta sequence [TACGGACAAAATCGTCCTTTGACGAACAGCCGAACGAAGGCCGCGTGTCAAGAAAGCAAAACAGCGAAAATCCGACTGCGCGCCGAGGAAGGCAACTATGTTGACTCGAAAACGTCGAAGAGAATTCTTGCGGTAGCTCGCAAACAACAGTGCCGAGCTGAACTTCCTCGACAGCTCCTTATGGGCCTGACGCCGCAAGAATCAGCTTGCGGTGAAGAAACGGCAACGGTTGGACGACCAGAGGATCCTCCGACGAGCTCTGATCCTGGCAGGAGGCCACCGATGCAACGGCGACATCGCACTGCGCAGAACAAATATTCTGCTCANTNGAACGCACTACTTCACGCACATCAGCCGAAGGAAANGCACTGAGCCGTTGCNGCCTGCAACATTGTTTCCAAACACAAACAGGCATTGGGCACCAAANAACCACGGCACCCCTGNNGCCCGACTATCACTCGTATGCGAAGNNAAAACTGACTGCACGCACACGCCG] [+] EMBL AL696082 [TACGGACAAAATCGTCCTTTGACGAACAGCCGAACGAAGGCCGCGTGTCAAGAAAGCAAAACAGCGAAAATCCGACTGCGCGCCGAGGAAGGCAACTATGTTGACTCGAAAACGTCGAAGAGAATTCTTGCGGTAGCTCGCAAACAACAGTGCCGAGCTGAACTTCCTCGACAGCTCCTTATGGGCCTGACGCCGCAAGAATCAGCTTGCGGTGAAGAAACGGCAACGGTTGGACGACCAGAGGATCCTCCGACGAGCTCTGATCCTGGCAGGAGGCCACCGATGCAACGGCGACATCGCACTGCGCAGAACAAATATTCTGCTCANTNGAACGCACTACTTCACGCACATCAGCCGAAGGAAANGCACTGAGCCGTTGCNGCCTGCAACATTGTTTCCAAACACAAACAGGCATTGGGCACCAAANAACCACGGCACCCCTGNNGCCCGACTATCACTCGTATGCGAAGNNAAAACTGACTGCACGCACACGCCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7950#0 GACCCACGCGTCCGCCCGCGTCCGTGCGGATTTGGCTCGTGTTTCTTCTACGGGAAAAAC 60 consensus_7950#1 ------------------------------------------------------------ consensus_7950#0 AGTTTCTACTTCCAATAAAAGATGGGCAAATCAAAGGCACACCGTATAAAGAAACTCACC 120 consensus_7950#1 ---------------------------------------------------------TAC 3 * consensus_7950#0 GGACCAAAATCGTCCTTTGACGAACAGCCGAACGAAGGCCGCGTGTCCAAGAAAGCAAAA 180 consensus_7950#1 GGAC-AAAATCGTCCTTTGACGAACAGCCGAACGAAGGCCGCGTGTC-AAGAAAGCAAAA 61 **** ****************************************** ************ consensus_7950#0 CAGCCGAAAATCCGACTGCGCGCCGAGGAAGGCAACTATGTTGACTCGAAAACGTCGAAG 240 consensus_7950#1 CAGC-GAAAATCCGACTGCGCGCCGAGGAAGGCAACTATGTTGACTCGAAAACGTCGAAG 120 **** ******************************************************* consensus_7950#0 AGAATTCTTGCGGTAGCTCGCAAACAACAG-GCCGAGCTGAACTTCCTCGACAGCTCCTT 299 consensus_7950#1 AGAATTCTTGCGGTAGCTCGCAAACAACAGTGCCGAGCTGAACTTCCTCGACAGCTCCTT 180 ****************************** ***************************** consensus_7950#0 -TGGGCC-GACGCCGCAAGAATCAGCT-GCGGTGAAGAAACGGCAACGATTGGACGAC-A 355 consensus_7950#1 ATGGGCCTGACGCCGCAAGAATCAGCTTGCGGTGAAGAAACGGCAACGGTTGGACGACCA 240 ****** ******************* ******************** ********* * consensus_7950#0 GAGGATCCTCCGACGAG-TCTGATC-TGGAGGAGCACGATGAAGGCGACATTGATGGAGA 413 consensus_7950#1 GAGGATCCTCCGACGAGCTCTGATCCTGGCAGGAGGCCACCGATGCAACGGCGACATCG- 299 ***************** ******* *** * * * * ** ** ** * consensus_7950#0 CAATTTGTTTGACGA-TATTAAAATCAGCGAGGAAGATGAGCGTGCGCTGCAAATGTTCC 472 consensus_7950#1 CACTGCGCAGAACAAATATTCTGCTCANTNGAACGCACTACTTCACGC---ACATCAGCC 356 ** * * ** * **** *** * * *** * ** ** consensus_7950#0 AAAACAAAGATGGCACCAAAACAC-GCACCCTGGCCGATATCATCTTGGAGAAAATGACT 531 consensus_7950#1 GAAGGAAAN---GCACTGAGCCGTTGCNGCCTG--CAACATTGTTTCCAAACACAAACAG 411 ** *** **** * * ** **** * * ** * * * * * consensus_7950#0 GAGAAGCAAACCGAAATTCAAACACAATTCTCCGACAATGC-GTCACTC--AAGCTGGAC 588 consensus_7950#1 GCATTGGGCACCAAANAACCACGGCACCCCTGNNGCCCGACTATCACTCGTATGCGAAGN 471 * * *** ** * * ** ** * * ****** * ** consensus_7950#0 GAAATCGACCCGAACGTGCGCGAGATGTACAAGGGCGTGCGGGATGTGCTGAAGCGCTAC 648 consensus_7950#1 NAAAACTGACTGCACGCACACGCCG----------------------------------- 496 *** * * * *** * ** consensus_7950#0 CGTAACGGCAAAATTCCGAAAGCGTTCAAGCTCATCCCCAAGCTGCGCAACTGTGAACAG 708 consensus_7950#1 ------------------------------------------------------------ consensus_7950#0 TTTCTGTACATTACGGAACCGCAGCAGTGGAGTGCGGCTGCCATGTTTCAGGCGACGCGC 768 consensus_7950#1 ------------------------------------------------------------ consensus_7950#0 CTGTTTTGCTCCGGCCTTACCCAGCACATGGCCCAGCGGTTCTACAATCTCGTGCTGCTG 828 consensus_7950#1 ------------------------------------------------------------ consensus_7950#0 CCACGTGTGCGCGACGATTTGGCCGAGTACGGGCGGCTGAATTTCTATCTGTATCGTTCG 888 consensus_7950#1 ------------------------------------------------------------ consensus_7950#0 CTGAAAAAGGCCCTGTTCAAACCGGCCGCCTTTATGAAGGGCATCGTGCTGCCTCTGCTC 948 consensus_7950#1 ------------------------------------------------------------ consensus_7950#0 GAGGCAGGCGACTGCACGCTGCGCGAGGCAATCATCATCGGCAGCGTGATTAGCTGCACG 1008 consensus_7950#1 ------------------------------------------------------------ consensus_7950#0 TCCATCCCGGTGCTGCACACGGCCGCGTGTTTGCTGAAAATCTGCGAAATGGAATACTCC 1068 consensus_7950#1 ------------------------------------------------------------ consensus_7950#0 GGCGCGTGTTCCGTGTTTATCCGCATCATACTGGACAAACGGTACGCCCTGCCGTACCGT 1128 consensus_7950#1 ------------------------------------------------------------ consensus_7950#0 GTGGTCGATGCGGCCGTGTTTCATTTCCTCAAGTTTGAGCAGGATAAGCGGGAGCTGCCC 1188 consensus_7950#1 ------------------------------------------------------------ consensus_7950#0 ACGCTGTGGCACAAAGCGCTGCTTACGTTTGCCCAGCGCTACAAGAACGACATTTCCTCC 1248 consensus_7950#1 ------------------------------------------------------------ consensus_7950#0 GAGCAGCGGGACGCTTTGCTGCATTTGCTGAAGAAAAAATCCCATCCCAAAATCACACCT 1308 consensus_7950#1 ------------------------------------------------------------ consensus_7950#0 GAAATTCGCCGCGAACTGCAGGCAGCCCAGTGTCGCGATGTANAAGTTGGC 1359 consensus_7950#1 --------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||