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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8032#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1406 fasta sequence
[CCGCCCACGCGTCCGGCACAAAGCACCGGTGGTGTGTGCACGGTCGGTCGCTCGGTCGTGACGAGTCGAACGCTCCAACAGACGATTGCGCTACCTACAAACCCAACGGCAGGCAAGGCCAGTAGTTGCAAACCAGTGAATGAAAGGCTGTGGTGTGATTTCTTGCAATCTTTGAGCCGTGTTTTAGTTGTTTTTGCAACACATAGAAGCAAGGAGAAGAAAAGTGAAAACAACAACAACAGAGCGCTTGAGCAGACAGGCAGTGGAAAAGTGGAAAAGTGAAACAAAGAAGAGTGGCCTGCTGTTGAAAAAGTGGTGTGTGACAAAACCGATAAGAACTAAAGTGTGCCATTCCTTCCAGACGAATCTCTTCTCTCATCGGTTACAATCCTGAGACGGTTGTGCCGTTTGTGTTGCTGTACGGGTCCTCTTTGTTGTTTGACATCATATCACGACACCCAACATGCCTCCATCGCGCCTGGACGGGCTCTATCGCTCGCTGCTGCTGACCAAGTTCTTCTGCAAAGGATGGGGCAAGCCGGAAAATCTCGAAAGGCTGTTTGCCTTCCGAAAGATCATCTCGAACCGGGCCGCCTGCTCGCAGCTGGTGCCACGTGACTACCCGGTGGAGATTACGAAGGAGGAGATCCACTCGGACTGCAAAATACTGGAGGGCAAGTTCATATCGCCGCTGGAAATCTACATGCCCGGGCTGGTGCCGGACGTGGCACAGAACGCTCACTTCCAGATACTGCTGCCGCTGAAGTGGAACGATGAGCGGTACAAGCCAATTTGCATCCATCTGGCCGGCACCGGGGATCATTACTACTGGAAGCGACGGAATCTGATTGCCAAACCGCTGCTGAAGGAAGCGAATTTGGGTGCAATTATCTTAGAAAATCCTTTCTACGGTTTGCGCAAACCGAAAGAGCAACGTGCATCCAGCCTACAAAATGTGTCGGACATTTTCGTCATGGGCGGTTGCCTGGTGCTGGAATCGCTCGTCCTGCTAAACTGGTGCGAACGCAACGGGTACGGCCCGCTCGGCATTACCGGGCTGTCGATGGGCGGCCATATGGCCTCGCTGGCGGCCACGAACTGGCCGAAACCGCTCGTGCTCGTACCGTGCCTGTCCTGGTCGACGGCCTCGTCCGTGTTTACCGAGGGCGTCATGAGCCATTCCATCAGCTGGGACGTGCTGGAGACGCAGTACTTCGCCGACGGTAACTTCCGCGAGCGGCTCTCCAAGATGGTGACCGTGGTGGATGACGCATTTGTGGCCGGCAAGCATTTCATACAGAACTTCAACCAGTCGGTAGAGGAGCTGCGGCAGGACATTGACGAAACGAGCGATCTCGTGTGCGGCGATCCGTCCACGGACGTCAACCTGACCGTGATCCGCGAAA]
[+] EMBL BM589720 [CCGCCCACGCGTCCGGCACAAAGCACCGGTGGTGTGTGCACGGTCGGTCGCTCGGTCGTGACGAGTCGAACGCTCCAACAGACGATTGCGCTACCTACAAACCCAACGGCAGGCAAGGCCAGTAGTTGCAAACCAGTGAATGAAAGGCTGTGGTGTGATTTCTTGCAATCTTTGAGCCGTGTTTTAGTTGTTTTTGCAACACATAGAAGCAAGGAGAAGAAAAGTGAAAACAACAACAACAGAGCGCTTGAGCAGACAGGCAGTGGAAAAGTGGAAAAGTGAAACAAAGAAGAGTGGCCTGCTGTTGAAAAAGTGGTGTGTGACAAAACCGATAAGAACTAAAGTGTGCCATTCCTTCCAGACGAATCTCTTCTCTCATCGGTTACAATCCTGAGACGGTTGTGCCGTTTGTGTTGCTGTACGGGTCCTCTTTGTTGTTTGACATCATATCACGACACCCAACATGCCTCCATCGCGCCTGGACGGGCTCTATCGCTCGCTGCTGCTGACCAAGTTCTTCTGCAAAGGATGGGGCAAGCCGGAAAATCTCGAAAGGCTG ]
[+] EMBL BM601482 [ ccgAGAAGAGTGGCCTGCTGTTGAAAAAGTGGTGTGTGACAAAACCGATAAAAACAAAAGTGTGCCATTCCTTCCAGACGAATCTCTTCTCTCATCGGTTACAATCCTGAGACGGTTGTGCCGTTTGTGTTGCTGTACGGTTCCTCTTTGTTGTTTGACATCATATCACGACACCCAACATGCCTCCATCGCGCCTGGACGGGCTCTATCGCTCGCTGCTGCTGACCAAGTTCTTCTGCAAAGGATGGGGCAAGCCGGAAAATCTCGAAAGGTTGTTTGCCTTCCGAAAGATCATCTCGAACCGGGCCGCCTGCTCGCAGCTGGTGCCACGTGACTACCCGGTGGAGATTACGAAGGAGGAGATCCACTCGGACTGCAAAATACTGGAGGGCAAGTTCATATCGCCGCTGGAAATCTACATGCCCGGGCTGGTGCCGGACGTGGCACAGAACGCTCACTTCCAGATACTGCTGCCGCTGAAGTGGAACGATGAGCGGTACAAGCCAATTTGCATCCATCTGGCCGGCACCGGGGATCATTACTACTGGAAGCGACGGAATCTGATTGCCAAACCGCTGCTGAAGGAAGCGAATTTGGGTGCAATTATCTTAGAAAATCCTTTCTACGGTTTGCGCAAACCG ]
[+] EMBL BM627423 [ CCGATTGTGTTGCTGTACGGGTCCTCTTTGTTGTTTGACATCATATCACGACACCCAACATGCCTCCATCGCTCCTGGACGGGCTCTATCACTCGCTGCTGCTGACCAAGTTCTTCTGCAAAGGAT ]
[+] EMBL BM611008 [ ccgTCTACATGCCCGGGCTGGTGCCGGACGTGGCACAGAACGCTCACTTCCAGATACTGCTGCCGCTGAAGTGGAACGATGAGCGGTACAAGCCAATTTGCATCCATCTGGCCGGCACCGGGGATCATTACTACTGGAAGCGACGGAATCTGATTGCCAAACCGCTGCTGAAGGAAGCGAATTTGGGTGCAATTATCTTAGAAAATCCTTTCTACGGTTTGCGCAAACCGAAAGAGCAACGTGCATCCAGCCTACAAAATGTGTCGGACATTTTCGTCATGGGCGGTTGCCTGGTGCTGGAATCGCTCGTCCTGCTAAACTGGTGCGAACGCAACGGGTACGGCCCGCTCGGCATTACCGGGCTGTCGATGGGCGGCCATATGGCCTCGCTGGCGGCCACGAACTGGCCGAAACCGCTCGTGCTCGTACCGTGCCTGTCCTGGTCGACGGCCTCGTCCGTGTTTACCGAGGGCGTCATGAGCCATTCCATCAGCTGGGACGTGCTGGAGACGCAGTACTTCGCCGACGGTAACTTCCGCGAGCGGCTCTCCAAGATGGTGACCGTGGTGGATGACGCATTTGTGGCCGGCAAGCATTTCATACAGAACTTCAACCAGTCGGTAGAGGAGCTGCGGCA ]
[+] EMBL BM644968 [ ccGCACAGAACGCTCACTTCCAGATACTGCTGCCGCTGAAGTGGAACGATGAGCGGTACAAGCCAATTTGCATCCATCTGGCCGGCACCGGGGATCATTACTACTGGAAGCGACGGAATCTGATTGCCAAACCGCTGCTGAAGGAAGCGAATTTGGGTGCAATTATCTTAGAAAATCCTTTCTACGGTTTGCGAAAACCGAAAGAGCAACGTGCATCCAGCCTGCAAAATGTGTCGGACATTTTCGTCATGGGCGGTTGCCTGGTGCTGGAATCGCTCGTCCTGCTGAACTGGTGCGAACGCAACGGGTACGGCCCGCTCGGCATTACCGGGCTGTCGATGGGCGGCCATATGGCTTCGCTGGCGGCCACGAACTGGCCGAAGCCGCTCGTGCTCGTACCGTGCCTGTCCTGGTCGACGGCCTCGTCCGTGTTTACCGAGGGCGTCATGAGCCATTCGATCAGCTGGGACGTGCTGGAGACGCAGTACTTCGCCGACGGTAACTTCCGCGAGCGGCTCTCCAAGATGGTGACCGTGGTGGATGACGCATTTGTGGCCGGCAAGCATTTCATACAGAACTTCAACCAGTCGGTAGAGGAGCTGCGGCAGGACATTGACGAAACGAGCGATCTCGTGTGCGGCGATCCGTCCACGGACGTCAACCTGACCGTGATCCGCGAAA]
consensusID : consensus_8032#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 733 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCG--AAAGCACAAAGCACCGGTGGTGTGTGCACGGTCGGCCGCTCGGTCGTGACGAGTCGAACGCTCCAACAGACGATTGCGCTACCTACAAACCCAACGACAGGCAAGGCCAGTAGTTGCAAACCAGTGAATGAAAGGCTGTGGTGTGATTACTTGCAATCTTTGAGCCGTGTTTTAATCGTTTTTGCAACACATAGAAGCTAGGAGAAGAAAAGTGAAAACAACAACAATAGCGCTTGAGCAGACAGTCAGTGGAAAAGTGGAAAAGCGAAACAAAGAAGAGTGGCCTGCTGTTGCAAAAGTGGTGTGTGACAAAACCGATAAAAACAAAAGTGTGCCATTCCTTCCAGACGAATCTCTTCCCTCAGCGACGGTTGTGCCGTTTGTGTTGCTGTGCGGTTCCTCTTTGTTGTTTGACATCACTCTCTAGCACACGACACCCAACATGCCTCCATCGCGCCTGGACGGGCTCTATCGGTCGCTGCTGCTGACCAAGTTCTTCTGCAAAGGATGGGGCAAGCCGGAAAATCTCGAAAGGTTGTTTGCCTTCCGGAAGATCATCTCGAACCGGGCCGCCTGCTCGCAGCTGGTGCCACGTGACTACCC-GGTGGAGATTACGAAGGAGGAGATCCACTCGGACTGCAAAATACTGGAGGGCAAGTTCATATCGCCGCTGGAAATCTACATGCCCGGGCTGGTGCCGGACGTG]
[+] EMBL BM647081 [CCGCCCACGCGTCCGCCCACGCGTCCG GCACAAAGCACCGGTGGTGTGTGCACGGTCGGCCGCTCGGTCGTGACGAGTCGAACGCTCCAACAGACGATTGCGCTACCTACAAACCCAACGACAGGCAAGGCCAGTAGTTGCAAACCAGTGAATGAAAGGCTGTGGTGTGATTACTTGCAATCTTTGAGCCGTGTTTTAATCGTTTTTGCAACACATAGAAGCTAGGAGAAGAAAAGTGAAAACAACAACAATAGCGCTTGAGCAGACAGTCAGTGGAAAAGTGGAAAAGCGAAACAAAGAAGAGTGGCCTGCTGTTGCAAAAGTGGTGTGTGACAAAACCGATAAAAACAAAAGTGTGCCATTCCTTCCAGACGAATCTCTTCCCTCAGCGACGGTTGTGCCGTTTGTGTTGCTGTGCGGTTCCTCTTTGTT ]
[+] EMBL BM645612 [ CCGCCCACGCGTCCGATAAAGCACAAAGCACCGGTGGTGTGTGCACGGTCGGCCGCTCGGTCGTGACGAGTCGAACGCTCCAACAGACGATTGCGCTACCTACAAACCCAACGACAGGCAAGGCCAGTAGTTGCAAACCAGTGAATGAAAGGCTGTGGTGTGATTACTTGCAATCTTTGAGCCGTGTTTTAATCGTTTTTGCAACACATAGAAGCTAGGAGAAGAAAAGTGAAAACAACAACAATAGCGCTTGAGCAGACAGTCAGTGGAAAAGTGGAAAAGCGAAACAAAGAAGAGTGGCCTGCTGTTGCAAAAGTGGTGTGTGACAAAACCGATAAAAACAAAAGTGTGCCATTCCTTCCAGACGAATCTCTTCCCTCAGCGACGGTTGTGCCGTTTGTGTTGCTGTGCGGTTCCTCTTTGTTGTTTGACATCACTCTCTAGCACACGACACCCAACATGCCTCCATCGCGCCTGGACGGGCTCTATCGGTCGCTGCTGCTGACCAAGTTCTTCTGCAAAGGATGGGGCAAGCCGGAAAATCTCGAAAGGTTGTTTGCCTTCCGGAAGATCATCTCGAACCGGGCCGCCTGCTCGCAGCTGGTGCCACGTGACTACCC GGTGGAGATTACGAAGGAGGAGATCCACTCGGACTGCAAAATACTGGAGGGCAAGTTCATATCGCCGCTGGAAATCTACATGCCCGGGCTGGTGCCGGACGTG]
[+] EMBL BM632122 [ CCG AAAGCACAAAGCACCGGTGGTGTGTGCACGGTCGGTCGCTCGGTCGTGACGAGTCGAACGCTCCAACAGACGATTGCGCTACCTACAAACCCAACGGCAGGCAAGGCCAGTAGTTGCAAACCAGTGAATGAAAAGCTGTGGTGTGATTTCTTGCAATCTTTGAGCCGTGTTTTAATTGTTTTTGCAACACATAGAAGCAAGGAGAAGAAAAGTGAAAACAACAACAATAGCGCTTGAGCAGACAGTCAGTGGAAAAGTGGAAAAGTGAAACAAAGAAGAGTGGCCTGCTGTTGCAAAAGTGGTGTGTGACAAAACCGATAAAAACAAAAGTGTGCCATTCCTTCCAGACGAATCTCTTTGCTCAGCGACGGTTGTGCTGTTTGTGTTGCTGTGCGGTTCCTCTTTGTTGTTTGACATCA TA TCACGACACCCAACATGCCTCCATCGCGCCTGGACGGGCTCTATCGCTCGTTGCTGCTGACCAAGTTCTTCTGCAAAGGATGGGGCAAGCCGGAAAATCTCGAAAGGTTGTTTGCCTTTCGAAAGATCATCTCGAACCGGGCCGCCTGCTCACAGCTGGTGCCACGTGACTACCC GGTGGAGATTACCAAGGAGGAAATCCACTCGGACTGCA ]
[+] EMBL BM649721 [ ccgAAAGCACCGGTGGTGTGTGCACGGTCGGCCGCTCGGTCGTGACGAGTCGAACGCTCCAACAGACGATTGCGCTACCTACAAACCCAACGACAGGCAAGGCCAGTAGTTGCAAACCAGTGAATGAAAGGCTGTGGTGTGATTACTTGCAATCTTTGAGCCGTGTTTTAATCGTTTTTGCAACACATAGAAGCTAGGAGAAGAAAAGTGAAAACAACAACAATAGCGCTTGAGCAGACAGTCAGTGGAAAAGTGGAAAAGCGAAACAAAGAAGAGTGGCCTGCTGTTGCAAAAGTGGTGTGTGACAAAACCGATAAAAACAAAAGTGTGCCATTCCTTCCAGACGAATCTCTTCCCTCAGCGACGGTTGTGCCGTTTGTGTTGCTGTGCGGTTCCTCTTTGTTGTTTGACATCACTCTCTAGCACACGACACCCAACATGCCTCCATCGCGCCTGGACGGGCTCTATCGGTCGCTGCTGCTGACCAAGTTCTTCTGCAAAGGATGGGGCAAGCCGGAAAATCTCGAAAGGTTGTTTGCCTTCCGGAAGATCATCTCGAACCGGGCCGCCTGCTCGCAGCTGGTGCCACGTGACTACCCAGGTGGAGATTACGAAGGAGGAGATCCACTCGGACTGCAAAATACTG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8032#0 ------------CCGCCCACGCGTCCG---GCACAAAGCACCGGTGGTGTGTGCACGGTC 45
consensus_8032#1 CCGCCCACGCGTCCGCCCACGCGTCCGAAAGCACAAAGCACCGGTGGTGTGTGCACGGTC 60
*************** ******************************
consensus_8032#0 GGTCGCTCGGTCGTGACGAGTCGAACGCTCCAACAGACGATTGCGCTACCTACAAACCCA 105
consensus_8032#1 GGCCGCTCGGTCGTGACGAGTCGAACGCTCCAACAGACGATTGCGCTACCTACAAACCCA 120
** *********************************************************
consensus_8032#0 ACGGCAGGCAAGGCCAGTAGTTGCAAACCAGTGAATGAAAGGCTGTGGTGTGATTTCTTG 165
consensus_8032#1 ACGACAGGCAAGGCCAGTAGTTGCAAACCAGTGAATGAAAGGCTGTGGTGTGATTACTTG 180
*** *************************************************** ****
consensus_8032#0 CAATCTTTGAGCCGTGTTTTAGTTGTTTTTGCAACACATAGAAGCAAGGAGAAGAAAAGT 225
consensus_8032#1 CAATCTTTGAGCCGTGTTTTAATCGTTTTTGCAACACATAGAAGCTAGGAGAAGAAAAGT 240
********************* * ********************* **************
consensus_8032#0 GAAAACAACAACAACAGAGCGCTTGAGCAGACAGGCAGTGGAAAAGTGGAAAAGTGAAAC 285
consensus_8032#1 GAAAACAACAACAATA--GCGCTTGAGCAGACAGTCAGTGGAAAAGTGGAAAAGCGAAAC 298
************** * **************** ******************* *****
consensus_8032#0 AAAGAAGAGTGGCCTGCTGTTGAAAAAGTGGTGTGTGACAAAACCGATAAGAACTAAAGT 345
consensus_8032#1 AAAGAAGAGTGGCCTGCTGTTGCAAAAGTGGTGTGTGACAAAACCGATAAAAACAAAAGT 358
********************** *************************** *** *****
consensus_8032#0 GTGCCATTCCTTCCAGACGAATCTCTTCTCTCATCGGTTACAATCCTGAGACGGTTGTGC 405
consensus_8032#1 GTGCCATTCCTTCCAGACGAATCTCTTCCCTCAGCG--------------ACGGTTGTGC 404
**************************** **** ** **********
consensus_8032#0 CGTTTGTGTTGCTGTACGGGTCCTCTTTGTTGTTTGACATCATAT-------CACGACAC 458
consensus_8032#1 CGTTTGTGTTGCTGTGCGGTTCCTCTTTGTTGTTTGACATCACTCTCTAGCACACGACAC 464
*************** *** ********************** ********
consensus_8032#0 CCAACATGCCTCCATCGCGCCTGGACGGGCTCTATCGCTCGCTGCTGCTGACCAAGTTCT 518
consensus_8032#1 CCAACATGCCTCCATCGCGCCTGGACGGGCTCTATCGGTCGCTGCTGCTGACCAAGTTCT 524
************************************* **********************
consensus_8032#0 TCTGCAAAGGATGGGGCAAGCCGGAAAATCTCGAAAGGCTGTTTGCCTTCCGAAAGATCA 578
consensus_8032#1 TCTGCAAAGGATGGGGCAAGCCGGAAAATCTCGAAAGGTTGTTTGCCTTCCGGAAGATCA 584
************************************** ************* *******
consensus_8032#0 TCTCGAACCGGGCCGCCTGCTCGCAGCTGGTGCCACGTGACTACCCGGTGGAGATTACGA 638
consensus_8032#1 TCTCGAACCGGGCCGCCTGCTCGCAGCTGGTGCCACGTGACTACCCGGTGGAGATTACGA 644
************************************************************
consensus_8032#0 AGGAGGAGATCCACTCGGACTGCAAAATACTGGAGGGCAAGTTCATATCGCCGCTGGAAA 698
consensus_8032#1 AGGAGGAGATCCACTCGGACTGCAAAATACTGGAGGGCAAGTTCATATCGCCGCTGGAAA 704
************************************************************
consensus_8032#0 TCTACATGCCCGGGCTGGTGCCGGACGTGGCACAGAACGCTCACTTCCAGATACTGCTGC 758
consensus_8032#1 TCTACATGCCCGGGCTGGTGCCGGACGTG------------------------------- 733
*****************************
consensus_8032#0 CGCTGAAGTGGAACGATGAGCGGTACAAGCCAATTTGCATCCATCTGGCCGGCACCGGGG 818
consensus_8032#1 ------------------------------------------------------------
consensus_8032#0 ATCATTACTACTGGAAGCGACGGAATCTGATTGCCAAACCGCTGCTGAAGGAAGCGAATT 878
consensus_8032#1 ------------------------------------------------------------
consensus_8032#0 TGGGTGCAATTATCTTAGAAAATCCTTTCTACGGTTTGCGCAAACCGAAAGAGCAACGTG 938
consensus_8032#1 ------------------------------------------------------------
consensus_8032#0 CATCCAGCCTACAAAATGTGTCGGACATTTTCGTCATGGGCGGTTGCCTGGTGCTGGAAT 998
consensus_8032#1 ------------------------------------------------------------
consensus_8032#0 CGCTCGTCCTGCTAAACTGGTGCGAACGCAACGGGTACGGCCCGCTCGGCATTACCGGGC 1058
consensus_8032#1 ------------------------------------------------------------
consensus_8032#0 TGTCGATGGGCGGCCATATGGCCTCGCTGGCGGCCACGAACTGGCCGAAACCGCTCGTGC 1118
consensus_8032#1 ------------------------------------------------------------
consensus_8032#0 TCGTACCGTGCCTGTCCTGGTCGACGGCCTCGTCCGTGTTTACCGAGGGCGTCATGAGCC 1178
consensus_8032#1 ------------------------------------------------------------
consensus_8032#0 ATTCCATCAGCTGGGACGTGCTGGAGACGCAGTACTTCGCCGACGGTAACTTCCGCGAGC 1238
consensus_8032#1 ------------------------------------------------------------
consensus_8032#0 GGCTCTCCAAGATGGTGACCGTGGTGGATGACGCATTTGTGGCCGGCAAGCATTTCATAC 1298
consensus_8032#1 ------------------------------------------------------------
consensus_8032#0 AGAACTTCAACCAGTCGGTAGAGGAGCTGCGGCAGGACATTGACGAAACGAGCGATCTCG 1358
consensus_8032#1 ------------------------------------------------------------
consensus_8032#0 TGTGCGGCGATCCGTCCACGGACGTCAACCTGACCGTGATCCGCGAAA 1406
consensus_8032#1 ------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||