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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_811#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 698 fasta sequence
[CCGGGGGTGGAAAAAGTGGAACCTGCAGCATTGCGAATTGTTTCCTCATCGATAATGGCCCAGCTGGTTTAGTGTGTGTGCGTGTGTGTTTTGCAACAAACAGGGACAGTCGTACGGGAAAGTTTTTTTTGCTTCCAACTGGGTGAAGTCACTGGAAGGACGGACTACGACGACAATTCCCTCTTTCACTCTATTGTTTTGTCGTTTACCAGTGTGTGCGTGTGTGTGTGTTGGAGCCGTAACCCTCCGTTGCGTATTTCACATCGGGGTGGTACCATTGTGGGTGCGTGTGTGTGTATTCAGCTGTGAAACATAGCACCCCAGCCGCATACGACGTAACTTTACAACGGTTCCCCCTTACCCCTCTGTGGCCCCGTGCATTGTGGAAGGGGGTGCAAGAAGTATGTGATTGTTATTGTTCCCCCTGGCTGGCAGAGGTTTTCAGTAGCTGACGAAGCAGCGGAAATTGGAGTGGCGAAACCAACACGGCGCTGTCTCAATAGTGTGCGGCTATCTCATCGATCGATTTCGTCCGGGAAGAGAGAGAGTTCTATCGCGCACTTGAAGGTAAAAGCTATCCGAAGAAAACACACGCTACGATGTCGGTTACGTTTGAGCAAATCATACTGGGATGCGAAGCGCATCGCCAACCGGCTAAAGGGATCGGGAAGCGCTCGGCGATGCGCTGCTGCTCGAGT]
[+] EMBL BM647421 [CCGGGGGTGGAAAAAGTGGAACCTGCAGCATTGCGAATTGTTTCCTCATCGATAATGGCCCAGCTGGTTTAGTGTGTGTGCGTGTGTGTTTTGCAACAAACAGGGACAGTCGTACGGGAAAGTTTTTTTTGCTTCCAACTGGGTGAAGTCACTGGAAGGACGGACTACGACGACAATTCCCTCTTTCACTCTATTGTTTTGTCGTTTACCAGTGTGTGCGTGTGTGTGTGTTGGAGCCGTAACCCTCCGTTGCGTATTTCACATCGGGGTGGTACCATTGTGGGTGCGTGTGTGTGTATTCAGCTGTGAAACATAGCACCCCAGCCGCATACGACGTAACTTTACAACGGTTCCCCCTTACCCCTCTGTGGCCCCGTGCATTGTGGAAGGGGGTGCAAGAAGTATGTGATTGTTATTGTTCCCCCTGGCTGGCAGAGGTTTTCAGTAGCTGACGAAGCAGCGGAAATTGGAGTGGCGAAACCAACACGGCGCTGTCTCAATAGTGTGCGGCTATCTCATCGATCGATTTCGTCCGGGAAGAGAGAGAGTTCTATCGCGCACTTGAAGGTAAAAGCTATCCGAAGAAAACACACGCTACGATGTCGGTTACGTTTGAGCAAATCATACTGGGATGCGAAGCGCATCGCCAACCGGCTAAAGGGATCGGGAAGCGCTCGGCGATGCGCTGCTGCTCGAGT]
consensusID : consensus_811#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 535 fasta sequence
[GAATCGCCCGAGGTNTCGCGCACTTGAAGGTAAAAGCTATCCGAAGAAAACACACGCTACGATGTCGCGTTACGTTTGAGCAAATCATACTGGATGCGAAGCGCATCGCCAACCGGCTAAAGGATCGGGAAGCGCTCGGCGATGCGCTGCTGCTCGAGTCGGAATCGGTCAACAAGCACATCGAGTCGATGCGCCAGTTCCAGGACGATATCGACATACTGAACAAGCTGGCGCGCGACCGCTCCAACAACCAGCTGATCACGATCATCCACCAGGAAAATCCGCAGATCCGCGAGATCCAGCAGGAGAATCGGCTGCTGAAGGCGGCCCTCGAGGACCACCAGCACGCGCTCGAGCACATCATGTCGAAGTACCGCGAGCACACGCAGGCCAAGATACTCAACACGAAGGTCAACTTTGTGGAGGCGTTCACGCGCCACCACCGGTCGGCCGACATCGAGCGGCGCGACGAGCTGATCCGGCAGCAGACGGCCAAAATACAGGAGATGGCCGCGTCATGCAGCGCGTCTCGCAG]
[+] EMBL AL932661 [GAATCGCCCGAGGTNTCGCGCACTTGAAGGTAAAAGCTATCCGAAGAAAACACACGCTACGATGTCGCGTTACGTTTGAGCAAATCATACTGGATGCGAAGCGCATCGCCAACCGGCTAAAGGATCGGGAAGCGCTCGGCGATGCGCTGCTGCTCGAGTCGGAATCGGTCAACAAGCACATCGAGTCGATGCGCCAGTTCCAGGACGATATCGACATACTGAACAAGCTGGCGCGCGACCGCTCCAACAACCAGCTGATCACGATCATCCACCAGGAAAATCCGCAGATCCGCGAGATCCAGCAGGAGAATCGGCTGCTGAAGGCGGCCCTCGAGGACCACCAGCACGCGCTCGAGCACATCATGTCGAAGTACCGCGAGCACACGCAGGCCAAGATACTCAACACGAAGGTCAACTTTGTGGAGGCGTTCACGCGCCACCACCGGTCGGCCGACATCGAGCGGCGCGACGAGCTGATCCGGCAGCAGACGGCCAAAATACAGGAGATGGCCGCGTCATGCAGCGCGTCTCGCAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_811#0 CCGGGGGTGGAAAAAGTGGAACCTGCAGCATTGCGAATTGTTTCCTCATCGATAATGGCC 60
consensus_811#1 ------------------------------------------------------------
consensus_811#0 CAGCTGGTTTAGTGTGTGTGCGTGTGTGTTTTGCAACAAACAGGGACAGTCGTACGGGAA 120
consensus_811#1 ------------------------------------------------------------
consensus_811#0 AGTTTTTTTTGCTTCCAACTGGGTGAAGT-CACTGGAAGG-ACGGACTA--CGACGACAA 176
consensus_811#1 ----------GAATCGCCCGAGGTNTCGCGCACTTGAAGGTAAAAGCTATCCGAAGAAAA 50
* ** * *** * **** ***** * *** *** ** **
consensus_811#0 TTCCCTCTTTCACTCTATTGTTTTGTCGTTTACCAGTGTGTGCGTGTGTGTGTGTTGGAG 236
consensus_811#1 CACACGCT---ACGATGTCGCGTTACGTTTGAGCAAATCATAC-TGGATGCGAAGCGCAT 106
* * ** ** * * * ** ** * ** * * ** ** * * *
consensus_811#0 CCGTAACCCTCCGTTGCGTATTTCACATCGGGGTGGTACCATTGTGGGTGCGTGTGTGTG 296
consensus_811#1 CGCCAACCGGCTAAAGGATCGGGAAGCGCTCGGCGATGC----GCTGCTGCTCGAGT-CG 161
* **** * * * * * ** * * * * * *** * ** *
consensus_811#0 TATTCAGCTGTGAAACATAGCACCCCAGCCGCATACGACGTAACTTTACAACGGTTCCCC 356
consensus_811#1 GAATCGGTCAACAAGCACATCG----AGTCG-ATGCGCC--AGTTCCAGGACGATATCGA 214
* ** * ** ** * * ** ** ** ** * * * * *** * *
consensus_811#0 CTTACCCCTCTGTGGCCCCGTGCATTGTGGAAGGGGGTGCAAGAAGTATGTGATTGTTAT 416
consensus_811#1 CATAC---TGAACAAGCTGGCGCGCGACCG------CTCCAACAACCAGCTGATCACGAT 265
* *** * * * ** * * *** ** * **** **
consensus_811#0 TGTTCCCCCTGGCTGGCAG-AGGTTTTCAGTAGCTGAC-GAAGCAGCGGAAATTGGAGTG 474
consensus_811#1 CATCCACCAGGAAAATCCGCAGATCCGCGAGATCCAGCAGGAGAATCGGCTGCTGAA--G 323
* * ** * * * ** * * * * * * ** * *** ** * *
consensus_811#0 GCGAAACCAACACGGCGCTGTCTCAATAGTGTGCGGCTATCTCATCGATCGATTTCGTCC 534
consensus_811#1 GCGGCCCTCGAGGACCACCAGCAC----GCGCTCGAGCACATCAT--GTCGAAGTACCGC 377
*** * * * * * * * ** * **** **** * *
consensus_811#0 GGGAAGAGAGAGAGTTCTATCGCGCACTTGAAGGTAAAAGCTATCCGAAGAAAACACACG 594
consensus_811#1 GAGCACACGCAGGCCAAGATACTCAACACGAAGGTCAACTTTGTG-GAGGCGTTCACGCG 436
* * * * ** ** ** ****** ** * * ** * *** **
consensus_811#0 CTACGAT--GTCGGTTACGTTTGAGCAAATCATACTGGGATGCGAAGCGCATCGCCAACC 652
consensus_811#1 CCACCACCGGTCGGCCGACATCGAGCGG--CGCGACGAGCTG----ATCCGGCAGCAGAC 490
* ** * ***** * **** * * * ** * * ** *
consensus_811#0 GGCTAAAGGGATCGGGAAGCGCTCGGCGATGCGCTGCTGCTCGAGT 698
consensus_811#1 GGCCAAAAT-ACAGGAGATGGCCGCGTCATGCAGCGCGTCTCGCAG 535
*** *** * ** * ** * **** ** ****
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||