|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8111#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 791 fasta sequence
[CCGGCCCGCAGTCCTAGAGTCCTACGCTCCTAGGAGGTTTCAGCACTCAAAAGAAAGCGACTAGCTCCAAGTGACAGACGTTCGACGTCATTTCCGCCCGCAAAAACAGCGAAAGAAAAAAAAAACAAAACCAACGCACCAAGTGTCCGGGGAAGTGTCCAACCGGAAGCGATCAAAGACAAACAGTGTGTGTGTGTGTGTGCCACAGTGTGTGTTTGCGTGTGTGCAGTGCATTGTTAGAGTGATCTTTGTGAGGCGTCAATCACAATGAAGGCTTTCGTTCTGGGATCTGCCGTGCTGCTGCTGGCTTCGGCCGCGGCTTCCGGCTCGTACCTCGGCGTGGCGCTCTCGTCCCAGTACCAGGCGCACGACGGTATCGGCGGCTACTCGTACGGCTACGCCGAGCCGAACTCGCAGAAGCACGAAACGAAGGATGCGCACGGCATCACGCACGGCGGCTACTCGTACGTCGACGCGAACGGCCACGTGCAGAGCGTGAAGTACACGGCGGACCCGATCCACGGATTCCAGGTGTCGGGCACGAACCTGCCGAAGGGCCCGGCCCCGCACGCCGTCCCGGTGCCGGCCTGGAACGCGTACGCCTA-CGCCCCGGTGGTGCTCGGCCACAACGGTGCCCCGCTCGAG-ACG-CCCGAGGTGCAGGCCGCCAAGGCAGCGCACTTCGCGGGCCATGCCGCCGCCAAGGCCCGCCTGCACAAGCGCTCGCTGTACGCCCCGTGGACGTACGCGGCCGCCGCCCCCGGTCGTCCTCGGCCACAACGGAGTCCCGCTCG]
[+] EMBL BM598502 [CCGGCAAACAGTCCTAGAGTCCTACGCTCCTAGGAGGTTTCAGCACTCAAAAGAAAGCGACTAGCTCCAAGTGACAGACGTTCGACGTCATTTCCGCCCGCAAAAACAGCGAAAGAAAAAAAAAACAAAACCAACGCACCAAGTGTCCGAGGAAGTGTCCAACCGGAAGCGATCAAAGACAAACAGTGTGTGTGTGTGTGTGCCACAGTGTGTGTTTGCGTGTGTGCAGTGCATTGTTAGAGTGATCTTTGTGAGGCGTCAATCACAATGAAGGCTTTCGTTCTGGGATCTGCCGTGCTGCTGCTGGCTTCGGCCGCGGCTTCCGGCTCGTACCTCGGCGTGGCGCTCTCGTCCCAGTACCAGGCGCACGACGGTATCGGCGGCTACTCGTACGGCTACGCCGAGCCGAACTCGCAGAAGCACGAAACGAAGGATGCGCACGGCATCACGCACGGCGGCTACTCGTACGTCGACGCGAACGGCCACGTGCAGAGCGTGAAGTACACGGCGGACCCGATCCACGGATTCCAGGTGTCGGGCACGAACCTGCCGAAGGGCCCGGCCCCGCATGCCGTCCCGGTGCCGGCCTGGAACGCGTACGCCTA CGCCCCGGTGGTGCTCGGCCACAACGGTGCCCCGCTCGAG ACG CCCGAag ]
[+] EMBL BM609375 [ CCGCAGTCCTAGAGTCCTACGCTCCTAGGAGGTTTCAGCACTCAAAAGAAAGCGACTAGCTCCAAGTGACAGACGTTCGACGTCATTTCCGCCCGCAAAAACAGCGAAAGAAAAAAAAAACAAAACCAACGCACCAAGTGTCCGGGGAAGTGTCCAACCGGAAGCGATCAAAGACAAACAGTGTGTGTGTGTGTGTGCCACAGTGTGTGTTTGCGTGTGTGCAGTGCATTGTTAGAGTGATCTTTGTGAGGCGTCAATCACAATGAAGGCTTTCGTTCTGGGATCTGCCGTGCTGCTGCTGGCTTCGGCCGCGGCTTCCGGCTCGTACCTCGGCGTGGCGCTCTCGTCCCAGTACCAGGCGCACGACGGTATCGGCGGCTACTCGTACGGCTACGCCGAGCCGAACTCGCAGAAGCACGAAACGAAGGATGCGCACGGCATCACGCACGGCGGCTACTCGTACGTCGACGCGAACGGCCACGTGCAGAGCGTGAAGTACACGGCGGACCCGATCCACGGATTCCAGGTGTCGGGCACGAACCTGCCGAAAGGCCCGGCCCCGCACGCCGTCCCGGTGCCGGCCTGGAACGCGTACGCCTA CGCCCCGGTGGTGCTCGGCCACAACGGTGCCCCGCTCGAG ACG CCCGAGGTGCAGGCCGCCAAGGCAGCGCACTTCGCGG ]
[+] EMBL BM654214 [ CCGCAGTCCTAGAGTCCTACGCTCCTAGGAGGTTTCAGCACTCAAAAGAAAGCGACTAGCTCCAAGTGACAGACGTTCGACGTCATTTCCGCCCGCAAAAACAGCGAAAGAAAAAAAAAACAAAACCAACGCACCAAGTGTCCGGGGAAGTGTCCAACCGGAAGCGATCAAAGACAAACAGTGTGTGTGTGTGTGTGCCACAGTGTGTGTTTGCGTGTGTGCAGTGCATTGTTAGAGTGATCTTTGTGAGGCGTCAATCACAATGAAGGCTTTCGTTCTGGGATCTGCCGTGCTGCTGCTGGCTTCGGCCGCGGCTTCCGGCTCGTACCTCGGCGTGGCGCTCTCGTCCCAGTACCAGGCGCACAACGGTATCGGCGGCTACTCGTACGGCTACGCCGAGCCGAACTCGCAGAAGCACGAAACGAAGGATGCGCACGGCATCACGCACGGCGGCTACTCGTACGTCGACGCGAACGGCCACGTGCAGAGCGTGAAGTACACGGCGGACCCGATCCACGGATTCCAGGTGTCGGGCACGAACCTGCCGAAGGGCCCGGCCCCGCACGCCGTCCCGGTGCCGGCCTGGAACGCGTACGCCTACCCCCCCGGTGGTGCTCGGCCACAACGGTGCCCCGCTCGAGAACGCCCCGAGGTGCAGGCCGCCAAGGCAG ]
[+] EMBL BX614499 [ TAGGAGGTTTCAGCACTCAAAAGAAAGCGACTAGCTCCAAGTGACAGACGTTCGACGTCATTTCCGCCCGCAAAAACAGCGAAAG AAAAAAAAAC AACCAACGCACCAAGTGTCCGGGGAAGTGTCCAACCGGAAGCGATCAAAGACAAACAGTGTGTGTGTGTGTGTGCCACAGTGTGTGTTTGCGTGTGTGCAGTGCATTGTTAGAGTGATCTTTGTGAGGCGTCAATCACAATGAAGGCTTTCGTTCTGGGATCTGCCGTGCTGCTGCTGGCTTCGGCCGCGGCTTCCGGCTCGTACCTCGGCGTGGCGCTCTCGTCCCAGTATCAGGCGCACGACGGTATCGGCGGCTACTCGTACGGCTACGCCGAGCCGAACTCGCAGAAGCACGAAACGAAGGATGCGCACGGCATCACGCACGGCGGCTACTCGTACGTCGACGCGAACGGCCACGTGCAGAGCGTGAAGTACACGGCGGACCCGATCCACGGATTCCAGGTGTCGGGCACGAACCTGCCGAAGGGCCCGGCCCCGCACGCCGTCCCGGTGCCGGCCTGGAACGCGTACGCCTA CGCGCCGGTGGTGCTCGGCCACAACGGTGCCCCGCT ]
[+] EMBL BX624489 [ ATTTCCGCCCGCAAAAACAGCGAAAGAAAAAAAAAACAAAACCAACGCACCAAGTGTCCGAGGAAGNGNCCAACCGGAAGCGATCAAAGACAAACAGTGTGTGTGTGTGTGTGCCACAGTGTGTGTTTGCGTGTGTGCAGTGCATTGTTAGAGTGATCTTTGTGAGGCGTCAATCACAATGAAGGCTTTCGTTCTGGGATCTGCCGTGCTGCTGCTGGCTTCGGCCGCGGCTTCCGGCTCGTACCTCGGCGTGGCGCTCTCGTCCCAGTACCAGGCGCACGACGGTATCGGCGGCTACTCGTACGGCTACGCCGAGCCGAACTCGCAGAAGCACGAAACGAAGGATGCGCACGGCATCACGCACGGCGGCTACTCGTACGTCGACGCGAACGGCCACGTGCAGAGCGTGAAGTACACGGCGGACCCGATCCACGGATTCCAGGTGTCGGGCACGAACCTGCCGAAGGGCCCGGCCCCGCATGCCGTCCCGGTGCCGGCCTGGAACGCGTACGCCTA CGCCCCGGTGGTGCTCGGCCACAACGGTGCCCCGCTCGAG ACG CCCGAGGTGCAGGCCGCCAAGGCAGCGCACTTCGCGGGCCATGCCGCCGCCAAGGCCCGCCTGCACAAGCGCTCGCTGTACGCCCCGTGGACGTACGCGGCCGCCGCCCCCGGTCGTCCTCGGCCACAACGGAGTCCCGCTCG]
[+] EMBL BM655961 [ ccgCGGGGAAGTGTCCAACCGGAAGCGATCAAAGACAAACAGTGTGTGTGTGTGTGTGCCACAGTGTGTGTTTGCGTGTGTGCAGTGCATTGTTAGAGTGATCTTTGTGAGGCGTCAATCACAATGAAGGCTTTCGTTCTGGGATCTGCCGTGCTGCTGCTGGCTTCGGCCGCGGCTTCCGGCTCGTACCTCGGCGTGGCGCTCTCGTCCCAGTACCAGGCGCACGACGGTATCGGCGGCTACTCGTACGGCTACGCCGAGCCGAACTCGCAGAAGCACGAAACGAAGGATGCGCACGGCATCACGCACGGCGGCTACTCGTACGTCGACGCGAACGGCCACGTGCAGAGCGTGAAGTACACGGCGGACCCGATCCACGGATTCCAGGTGTCGGGCACGAACCTGCCGAAGGGCCCGGCCCCGCACGCCGTCCCGGTGCCGGCCTGGAACGCGTACGCCTA CGCCCCGGTGGTGCTCGGCCACAACGGTGCCCCGCTCGAG ACG CCCGAGGTGCAGGCCGCCAAGGCAGCGCACTTCGCGGCCCATGCCGCCGCCAAGGCCCGCCTGCACAAGCGCTCGCTGTACGCCCC ]
consensusID : consensus_8111#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 616 fasta sequence
[CAAGAATCGCCACGAGGTTAATCCTAGAAGTCCTACGCTCCTAGCGAGGTTTCAGCACTCAAAAGAAAGCGACTAGCTCCAAGTGACAGACGTTCGACGTCATTTCCGCCCGCAAAAACAGCGAAAGAAAAAAAAAACAAAACCAACGCACCAAGTGTCCGAGGAAGTGTCCAACCGGAAGCGATCAAAGACAAACAGTGTGTGTGTGTGTGTGCCACAGTGTGTGTTTGCGTGTGTGCAGTGCATTGTTAGAGTGATCTTTGTGAGGCGTCAATCACAA-TGAAGGCTTTCGTTCTGGGATCTGCCGTGCTGCTGCTGGCTTCGGCCGCGGCTTCCGGCTCGTACCTCGGCGTGGCGCTCTCGTCCCAGTACCAGGCGCACGACGGTATCGGCGGCTACTCGTACGGCTACGCCGAGCCGAACTCGCAGAAGCACGAAACGAAGGATGCGCACGGCATCACGCACGGCGGCTACTCGTACGTCGACGCGAACGGCCACGTGCAGAGCGTGAAAGTACACGGCGGACCCGATCCACGGATTCCAGGTGTCGGGACACGAACCTGCCGAAGGGCCCGGGGCCCGCNATGCCGTCCCGGGTGCCGGCCTGGAACGCGTA]
[+] EMBL BX466578 [CAAGAATCGCCACGAGGTTAATCCTAGAAGTCCTACGCTCCTAGCGAGGTTTCAGCACTCAAAAGAAAGCGACTAGCTCCAAGTGACAGACGTTCGACGTCATTTCCGCCCGCAAAAACAGCGAAAGAAAAAAAAAACAAAACCAACGCACCAAGTGTCCGAGGAAGTGTCCAACCGGAAGCGATCAAAGACAAACAGTGTGTGTGTGTGTGTGCCACAGTGTGTGTTTGCGTGTGTGCAGTGCATTGTTAGAGTGATCTTTGTGAGGCGTCAATCACAA TGAAGGCTTTCGTTCTGGGATCTGCCGTGCTGCTGCTGGCTTCGGCCGCGGCTTCCGGCTCGTACCTCGGCGTGGCGCTCTCGTCCCAGTACCAGGCGCACGACGGTATCGGCGGCTACTCGTACGGCTACGCCGAGCCGAACTCGCAGAAGCACGAAACGAAGGATGCGCACGGCATCACGCACGGCGGCTACTCGTACGTCGACGCGAACGGCCACGTGCAGAGCGTGAAAGTACACGGCGGACCCGATCCACGGATTCCAGGTGTCGGGACACGAACCTGCCGAAGGGCCCGGGGCCCGCNATGCCGTCCCGGGTGCCGGCCTGGAACGCGTA]
[+] EMBL BX619683 [ CCTAG GAGGTTTCAGCACTCAAAAGAAAGCGACTAGCTCCAAGTGACAGACGTTCGACGTCATTTCCGCCCGCAAAAACAGCGAAAGAAAAAAAAAACAAAACCAACGCACCAAGTGTCCGAGGAAGTGTCCAACCGGAAGCGATCAAAGACAAACAGTGTGTGTGTGTGTGTGCCACAGTGTGTGTTTGCGTGTGTGCAGTGCATTGTTAGAGTGATCTTTGTGAGGCGTCAATCACAATTGAAGGCTTTCGTTCTGGGATCTGCCGTGCTGCTGCTGGCTTCGGCCGCGGCTTCCGGCTCGTACCTCGGCGTGGCGCTCTCGTCCCAGTACCAGGCGCACGACGGTATCGGCGGCTACTCGTACGGCTACGCCGAGCCGAACTCGCAGAAGCACGAAACGAAGGATGCGCACGGCATCACGCACGGCGGCTACTCGTACGTCGACGCGAACGGCCACGTG ]
consensusID : consensus_8111#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 609 fasta sequence
[CCGCCCACGCGTCCGAGCGACTAGCTCCAAGTGACAGACGTTCGACGTCATTTCCGCCCGCAAAAACAGCGAAAGAAAAAAAAAACAAAACCAACGCACCAAGTGTCCGGGGAAGTGTCCAACCGGAAGCGATCAAAGACAAACAGTGTGTGTGTGTGTGTGCCACAGTGTGTGTTTGCGTGTGTGCAGTGCATTGTTAGAGTGATCTTTGTGAGGCGTCAATCACAATGAAGGCTTTCGTTCTGGGATCTGCCGTGCTGCTGCTGGCTTCGGCCGCGGCTTCCGGCTCGTACCTCGGCGTGGCGCTCTCGTCCCAGTACCAGGCGCACGACGGTATCGGCGGCTACTCGTACGGCTACGCCGAGCCGAACTCGCAGAAGCACGAAACGAAGGATGCGCACGGCATCACGCACGGCGGCTACTCGTACGTCGACGCGAACGGCCACGTGCAGAGCGTGAAGTACACGGCGGACCCGATCCACGGATTCCAGGTGTCGGGCACGAACCTGCCGAAGGGCCCGGCCCCGCACGCCGTCCCGGTGCCGGCCTGGAACGCGTACGCCTACGCCCCGGTGGTGCTCGGCCACAACGGTGCCCCGCTCGAGACGC]
[+] EMBL BM635481 [CCGCCCACGCGTCCGAGCGACTAGCTCCAAGTGACAGACGTTCGACGTCATTTCCGCCCGCAAAAACAGCGAAAGAAAAAAAAAACAAAACCAACGCACCAAGTGTCCGGGGAAGTGTCCAACCGGAAGCGATCAAAGACAAACAGTGTGTGTGTGTGTGTGCCACAGTGTGTGTTTGCGTGTGTGCAGTGCATTGTTAGAGTGATCTTTGTGAGGCGTCAATCACAATGAAGGCTTTCGTTCTGGGATCTGCCGTGCTGCTGCTGGCTTCGGCCGCGGCTTCCGGCTCGTACCTCGGCGTGGCGCTCTCGTCCCAGTACCAGGCGCACGACGGTATCGGCGGCTACTCGTACGGCTACGCCGAGCCGAACTCGCAGAAGCACGAAACGAAGGATGCGCACGGCATCACGCACGGCGGCTACTCGTACGTCGACGCGAACGGCCACGTGCAGAGCGTGAAGTACACGGCGGACCCGATCCACGGATTCCAGGTGTCGGGCACGAACCTGCCGAAGGGCCCGGCCCCGCACGCCGTCCCGGTGCCGGCCTGGAACGCGTACGCCTACGCCCCGGTGGTGCTCGGCCACAACGGTGCCCCGCTCGAGACGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8111#0 ------------CCGGCCCGCAGTCCTAGAGTCCTACGCTCCTAGGAGGTTTCAGCACTC 48
consensus_8111#2 ----------------------------------------------------CCGCCCAC 8
consensus_8111#1 CAAGAATCGCCACGAGGTTAATCCTAGAAGTCCTACGCTCCTAGCGAGGTTTCAGCACTC 60
* ** * *
consensus_8111#0 AAAAGAAAGCGACTAGCTCCAAGTGACAGACGTTCGACGTCATTTCCGCCCGCAAAAACA 108
consensus_8111#2 GCGTCCGAGCGACTAGCTCCAAGTGACAGACGTTCGACGTCATTTCCGCCCGCAAAAACA 68
consensus_8111#1 AAAAGAAAGCGACTAGCTCCAAGTGACAGACGTTCGACGTCATTTCCGCCCGCAAAAACA 120
*****************************************************
consensus_8111#0 GCGAAAGAAAAAAAAAACAAAACCAACGCACCAAGTGTCCGGGGAAGTGTCCAACCGGAA 168
consensus_8111#2 GCGAAAGAAAAAAAAAACAAAACCAACGCACCAAGTGTCCGGGGAAGTGTCCAACCGGAA 128
consensus_8111#1 GCGAAAGAAAAAAAAAACAAAACCAACGCACCAAGTGTCCGAGGAAGTGTCCAACCGGAA 180
***************************************** ******************
consensus_8111#0 GCGATCAAAGACAAACAGTGTGTGTGTGTGTGTGCCACAGTGTGTGTTTGCGTGTGTGCA 228
consensus_8111#2 GCGATCAAAGACAAACAGTGTGTGTGTGTGTGTGCCACAGTGTGTGTTTGCGTGTGTGCA 188
consensus_8111#1 GCGATCAAAGACAAACAGTGTGTGTGTGTGTGTGCCACAGTGTGTGTTTGCGTGTGTGCA 240
************************************************************
consensus_8111#0 GTGCATTGTTAGAGTGATCTTTGTGAGGCGTCAATCACAATGAAGGCTTTCGTTCTGGGA 288
consensus_8111#2 GTGCATTGTTAGAGTGATCTTTGTGAGGCGTCAATCACAATGAAGGCTTTCGTTCTGGGA 248
consensus_8111#1 GTGCATTGTTAGAGTGATCTTTGTGAGGCGTCAATCACAATGAAGGCTTTCGTTCTGGGA 300
************************************************************
consensus_8111#0 TCTGCCGTGCTGCTGCTGGCTTCGGCCGCGGCTTCCGGCTCGTACCTCGGCGTGGCGCTC 348
consensus_8111#2 TCTGCCGTGCTGCTGCTGGCTTCGGCCGCGGCTTCCGGCTCGTACCTCGGCGTGGCGCTC 308
consensus_8111#1 TCTGCCGTGCTGCTGCTGGCTTCGGCCGCGGCTTCCGGCTCGTACCTCGGCGTGGCGCTC 360
************************************************************
consensus_8111#0 TCGTCCCAGTACCAGGCGCACGACGGTATCGGCGGCTACTCGTACGGCTACGCCGAGCCG 408
consensus_8111#2 TCGTCCCAGTACCAGGCGCACGACGGTATCGGCGGCTACTCGTACGGCTACGCCGAGCCG 368
consensus_8111#1 TCGTCCCAGTACCAGGCGCACGACGGTATCGGCGGCTACTCGTACGGCTACGCCGAGCCG 420
************************************************************
consensus_8111#0 AACTCGCAGAAGCACGAAACGAAGGATGCGCACGGCATCACGCACGGCGGCTACTCGTAC 468
consensus_8111#2 AACTCGCAGAAGCACGAAACGAAGGATGCGCACGGCATCACGCACGGCGGCTACTCGTAC 428
consensus_8111#1 AACTCGCAGAAGCACGAAACGAAGGATGCGCACGGCATCACGCACGGCGGCTACTCGTAC 480
************************************************************
consensus_8111#0 GTCGACGCGAACGGCCACGTGCAGAGCGTGAA-GTACACGGCGGACCCGATCCACGGATT 527
consensus_8111#2 GTCGACGCGAACGGCCACGTGCAGAGCGTGAA-GTACACGGCGGACCCGATCCACGGATT 487
consensus_8111#1 GTCGACGCGAACGGCCACGTGCAGAGCGTGAAAGTACACGGCGGACCCGATCCACGGATT 540
******************************** ***************************
consensus_8111#0 CCAGGTGTCGGG-CACGAACCTGCCGAAGGGCCCGG--CCCCGCACGCCGTCCCGG-TGC 583
consensus_8111#2 CCAGGTGTCGGG-CACGAACCTGCCGAAGGGCCCGG--CCCCGCACGCCGTCCCGG-TGC 543
consensus_8111#1 CCAGGTGTCGGGACACGAACCTGCCGAAGGGCCCGGGGCCCGCNATGCCGTCCCGGGTGC 600
************ *********************** *** * ********** ***
consensus_8111#0 CGGCCTGGAACGCGTACGCCTACGCCCCGGTGGTGCTCGGCCACAACGGTGCCCCGCTCG 643
consensus_8111#2 CGGCCTGGAACGCGTACGCCTACGCCCCGGTGGTGCTCGGCCACAACGGTGCCCCGCTCG 603
consensus_8111#1 CGGCCTGGAACGCGTA-------------------------------------------- 616
****************
consensus_8111#0 AGACGCCCGAGGTGCAGGCCGCCAAGGCAGCGCACTTCGCGGGCCATGCCGCCGCCAAGG 703
consensus_8111#2 AGACGC------------------------------------------------------ 609
consensus_8111#1 ------------------------------------------------------------
consensus_8111#0 CCCGCCTGCACAAGCGCTCGCTGTACGCCCCGTGGACGTACGCGGCCGCCGCCCCCGGTC 763
consensus_8111#2 ------------------------------------------------------------
consensus_8111#1 ------------------------------------------------------------
consensus_8111#0 GTCCTCGGCCACAACGGAGTCCCGCTCG 791
consensus_8111#2 ----------------------------
consensus_8111#1 ----------------------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||