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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8172#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 847 fasta sequence
[CCGGAGGTGGCGGGCCAATCGCGGGCGGTCGGGCTCGGTCCGCTCGGCCTGTCCGGCAACACGGCGTACTTTGGCCTGCTCGAGATTTGCAAACCGAAGCCGGGCGAAACGGTGGTGGTGAGTGCGGCGGCCGGTGCCGTCGGCAGCCTGGTCGGCCAGATCGCGAAGATTAAGGGCTGCCACGTGGTGGGGCTGGCCGGCACGGAGGAAAAGTGCGGGTGGCTGCGCGAGCTCGGCTTCGACGCGGTCGTCAACTATCGGGCCGGATCGGTGCGGGAGCAGCTGGCCGCGGCAACGCCCCGCGGCGTCGACTGCTACTTCGACAACGTGGGCGGCGAGCTGACGGAGCTGGTGCGCGAGCGCATGAACCTGTACGGGCGCATCTCGGTGTGCGGCGCCGTTTCGAGCTACAACGGGCAGCCGGCCCAGGTGGCCGACCCGCAGCGCGACTACGTCTCGAAGCAGCTCCGGCAGGAAGGGTTCGTCGTCTTCCGGTGGCTGCCCCGCTGGATGGAGGGCATCGGCCAGATGCGCGAATGGCTCGAGCAGGGCAAGCTGGTCCACCGGGAAACCGTGTACGAGGGGTTCGACAGTGCGCCGCGCTCGTTCATCAGCATGCTGCAGGGCGGCAACATTGGCAAGGCGGTCGTGAAGGTGTAGTGCGCGCCCCGCCCTACCGCTGTCGCTCTTTGCACGGGGGCGCCGGCTCGTTCCCTCCGCCGTGGTACCGCCGGCAGTGGTTCTTCAGCAGACACTTGTACTGGAAGCGCTTGTCGCAGTCGGCGCACGGGTACGGCTTGTCGTTCGTGTGGATGCGCATGTGAACCCGGAGCGTGTACGCGATCGT]
[+] EMBL BX617583 [CCGGAGGTGGCGGGCCAATCGCGGGCGGTCGGGCTCGGTCCGCTCGGCCTGTCCGGCAACACGGCGTACTTTGGCCTGCTCGAGATTTGCAAACCGAAGCCGGGCGAAACGGTGGTGGTGAGTGCGGCGGCCGGTGCCGTCGGCAGCCTGGTCGGCCAGATCGCGAAGATTAAGGGCTGCCACGTGGTGGGGCTGGCCGGCACGGAGGAAAAGTGCGGGTGGCTGCGCGAGCTCGGCTTCGACGCGGTCGTCAACTATCGGGCCGGATCGGTGCGGGAGCAGCTGGCCGCGGCAACGCCCCGCGGCGTCGACTGCTACTTCGACAACGTGGGCGGCGAGCTGACGGAGCTGGTGCGCGAGCGCATGAACCTGTACGGGCGCATCTCGGTGTGCGGCGCCGTTTCGAGCTACAACGGGCAGCCGGCCCAGGTGGCCGACCCGCAGCGCGACTACGTCTCGAAGCAGCTCCGGCAGGAAGGGTTCGTCGTCTTCCGGTGGCTGCCCCGCTGGATGGAGGGCATCGGCCAGATGCGCGAATGGCTCGAGCAGGGCAAGCTGGTCCACCGGGAAACCGTGTACGAGGGGTTCGACAGTGCGCCGCGCTCGTTCATCAGCATGCTGCAGGGCGGCAACATTGGCAAGGCGGTCGTGGAGGTGTAGTGCGCGCCCCGCCCTACCGCTGTCGCTCTTTGCACCGGGGCGCCGGCTCGTTCCCTCCGCCGTGGTACCGCCGGCAGTGGTTCTTC ]
[+] EMBL BX610411 [ CTGACGGAGCTGGTGCGCGAGCGCATGAACCTGTACGGGCGCATCTCGGTGTGCGGCGCCGTTTCGAGCTACAACGGGCAGCCGGCCCAGGTGGCCGACCCGCAGCGCGACTACGTCTCGAAGCAGCTCCGGCAGGAAGGGTTCGTCGTCTTCCGGTGGCTGCCCCGCTGGATGGAGGGCATCGGCCAGATGCGCGAATGGCTCGAGCAGGGCAAGCTGGTCCACCGGGAAACCGTGTACGAGGGGTTCGACAGTGCGCCGCGCTCGTTCATCAGCATGCTGCAGGGCGGCAACATTGGCAAGGCGGTCGTGAAGGTGTAGTGCGCGCCCCGCCCTACCGCTGTCGCTCTTTGCACGGGGGCGCCGGCTCGTTCCCTCCGCCGTGGTACCGCCGGCAGTGGTTCTTCAGCAGACACTTGTACTGGAAGCGCTTGTCGCAGTCGGCGCACGGGTACGGCTTGTCGTTCGTGTGGATGCGCATGTGAACCCGGAGCGTGTACGCGATCGT]
[-] EMBL CNS08ZLB [ CTGCAGGGCGGCAACATCGGCAAGGCGGTCGTGAAGGTGTTGTGCGCGCCCCGCCCTATCCCTGTCGCTCTTTGCACGGGGGCGCCGGCTCGTTCCCTCCGCCGTGGTCCCGCCGGCAGTGGTTCTTCGGCAGACACTTG ]
consensusID : consensus_8172#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 813 fasta sequence
[CCGGACGTGCGTGAACGGTTTCTGGCCAAAGTCTCGCTCCCGATTACATCGTACGCGACCAGCAGGATCCTAAGAAGGGGTCAAAGTACAGCACAAGTC--ACGGGAGTGTCCGCAAGCAAAGGATGGTGCTGGCAAGGAAGTGGATGTACGTGCGGCGCCCGGAAGGGGAACCGAAGGAGACCGATTTCGCGCTCAAGGAGGAGGAGCTGCCGGCCCTCGAGGCGGAAGATTTCCTCGTCGAGACGGAGTACTTCAGCCTGGATGCGGGACTGCGCGGGTACATGGAGCTCGGGGCCCTGCCCGTCGGCAGCCCCGTCATCGGGATGGCCCTCGCGAAGGTGATCGAGTCGCGGAACGCCCAGTTCCCGGTCGGTGCGGTCGTCTGTGCCCGGCTCGGCTGGGTCACGCACGCCGTCCTGAACCAGCAGCAGCAGAAGGAGCTGCGGCCGTACATCG-TGCCGGAGG-TGGCGGGCCAATCGCGGGCGGTCGGGCTCGGTCCGCTCGGCCTGTCCGGCAACACGGCGTAC-TTTGGCCTGCTCGAGATTTGCAAACCGAAGCCGGGCGAAACGGTGGTGGTGAGTGCGGCGGCCGGTGCCGTCGGCAGCCTGGTCGGCCAGATCGCGAAGATTAAGGGCTGCCACGTGGTGGGGCTGGCCGGCACGGAGGAAAAGTGCGGGTGGCTGCGCGACTCGGCTTCGACGCGGTCGTCAACTATCGGGCCGGATCGGTGCGGGACAGCTGGCCGCGGCAACGCCCGCGGCGTTCCACCGGGAAACCGTGTACGAGGGGTTCGACAGTTCGCCGCGCTCGTTC]
[+] EMBL BM594816 [CCGGACGTGCGTGAACGGTTTCTGGCCAAAGTCTCGCTCCCGATTACATCGTACGCGACCAGCAGGATCCTAAGAAGGGGTCAAAGTACAGCACAAGTC ACGGGAGTGTCCGCAAGCAAAGGATGGTGCTGGCAAGGAAGTGGATGTACGTGCGGCGCCCGGAAGGGGAACCGAAGGAGACCGATTTCGCGCTCAAGGAGGAGGAGCTGCCGGCCCTCGAGGCGGAAGATTTCCTCGTCGAGACGGAGTACTTCAGCCTGGATGCGGGACTGCGCGGGTACATGGAGCTCGGGGCCCTGCCCGTCGGCAGCCCCGTCATCGGGATGGCCCTCGCGAAGGTGATCGAGTCGCGGAACGCCCAGTTCCCGGTCGGTGCGGTCGTCTGTGCCCGGCTCGGCTGGGTCACGCACGCCGTCCTGAACCAGCAGCAGCAGAAGGAGCTGCGGCCGTACATCG TGCCGGAGG TGGCGGGCCAATCGCGGGCGGTCGGGCTCGGTCCGCTCGGCCTGTCCGGCAACACGGCGTAC TTTGGCCTGCTCGAGATTTGCAAACCGAAGCCGGGCGAAACGGTGGTGGTGAGTGCGGCGGCCGGTGCCGTCGGCAGCCTGGTCGGCCAGATCGCGAAGATTAAGGGCTGCCACGTGGTGGGGCTGGCCGGCACGGAGGAAAAGTG ]
[+] EMBL AL694268 [ AAAGT T GCTCCCGATTACATCGTACGCGA CAGCAGGATCCTAAGAAGGGGTCAAAGTACAGCACAAGTC ACGGGAGTGT CGCAAGCAAAGGATGGTGCTGGCAAGGAAGTGGATGTACGTGCGGCGCCCGGAAGGGGAACCGAAGGAGACCGATTTCGCG ]
[+] EMBL CNS08JAX [ ATCGTACGCGACCAGCAGGATCCTAAGAAGGGGTCAAAGTACAGCACAAGTC ACGGGAGTGTCCGCAAGCAAAGGATGGTGCTGGCAAGGAAGTGGATGTACGTGCGGCGCCCGGAA GGGAACCGAA GAGACCGATTTCGCGCTCAAGGAGGAGGAGCTGCCGGCCCTCGAGGCGGAAGATTTCCTCGTCGAGACGGAGTACTTCAGCCTGGATGCGGGACTGCGCGGGTACATGGAGCTCGGGGCTCTG CCGTCGGCAGCCCCGTCATCGGGATGGCCCTCGCGAAGGTGATCGAGTTGCGGAACGCCCAGTTCCCGGTCGGTGCGGTCGTCTGTGCCCGGCTCGGCTGGGTCACTCACGCCGTCCTGAAGCAGCAGCAGCAGAAGGAGCTGCGGCCGTACATCGTTGCCGGAGGTTGGCGGGCCAATCGCGGGCGGTCGGGCTCGGTCCGCTCGGCCTGTTCGGCAACACGGCGTAC TTTGGCCTGCTCGAGATTTGCAAATCGAAGCCGGGCGAAACGGTGGTGGTGAGTTCGGCGGCCGGTGCCGTCGGCAGCCTGGTCGGCCAGATCGCGAAGATTAAGGGCTGCCACGTGGTGGGGCTGGCCGGCAC GAGGAAAATTGCGGGTGGCTGCGCGACTCGGCTTCGACGCGGTCGTCAACTATCGGGCCGGATCGGTGCGGGACAGCTGGCCGCGGCAACGCCCGCGGCGTTCCACCGGGAAACCGTGTACGAGGGGTTCGACAGTTCGCCGCGCTCGTTC]
[+] EMBL BM642941 [ ccgccCACGCGTCCGACGGAAGTGTCCGCAAGCAAAGGATGGTGCTGGCAAGGAAGTGGATGTACGTGCGGCGCCCGGAAGGGGAACCGAAGGAGACCGATTTCGCGCTCAAGGAGGAGGAGCTGCCGGCCCTCGAGGCGGAAGATTTCCTCGTCGAGACGGAGTACTTCAGCCTGGATGCGGGACTGCGCGGGTACATGGAGCTCGGGGCCCTGCCCGTCGGCAGCCCCGTCATCGGGATGGCCCTCGCGAAGGTGATCGAGTCGCGGAACGCCCAGTTCCCGGTCGGTGCGGTCGTCTGTGCCCGGCTCGGCTGGGTCACGCACGCCGTCCTGAACCAGCAGCAGCAGAAGGAGCTGCGGCCGTACATCG TGCCGGAGG TGGCGGGCCAATCGCGGGCGGTCGGGCTCGGTCCGCTCGGCCTGTCCGGCAACACGGCGTAC TTTGGCCTGCTCGAGATTTGCAAACCGAAGCCGGGCGAAACGGTGGTGGTGAGTGCCGCGGCCGGTGCCGTCGGCAGCCTGGTCGGCCAGATCGCGAAGATTAAGGGCTGCCACGTGGTGGGGCTGGCCGGC ]
[+] EMBL BX602939 [ TACGTGCGGCGCCCGGAAGGGGAACCGAAGGAGACCGATTTCGCGCTCAAGGAGGAGGAGCTGCCGGCCCTCGAGGCGGAAGATTTCCTCGTCGAGACGGAGTACTTCAGCCTGGATGCGGGACTGCGCGGGTACATGGAGCTCGGGGCCCTGCCCGTCGGCAGCCCCGTCATCGGGATGGCCCTCGCGAAGGTGATCGAGTCGCGGAACGCCCAGTTCCCGGTCGGTGCGGTCGTCTGTGCCCGGCTCGGCTGGGTCACGCACGCCGTCCTGAACCAGCAGCAGCAGAAGGAGCTGCGGCCGTACATCG TGCCGGAGG TGGCGGGCCAATCGCGGGCGGTCGGGCTCGGTCCGCTCGGCCTGTCCGGCAACACGGCGTACTTTTGGCCTGCTCG ]
[+] EMBL CNS08ZLA [ GTGCCCGGCTCGGCTGGGTCACTCACGCCGTCCTGAAGCAGCAGCAGCAGAAGGAGCTGCGGCCGTACATCG TGCCGGAGG TGGCGGGCCAATCGCGGGCGGTCGGGCTCGGTCCGCTCGGCCTGTCCGGCAACACGGCGTAC TTTGGCCTGCTCGAGATTTGCAAACCGAAGCCGGGCGAAACGGTGGTGGTGAGTACGGCGGCCGGTGCCGTCGGCAGCCTGGTCGGCCAGATCGCGAAGATTAAGGGCTGCCACGTGGTGGGGCTGGCCGGCACGGAGGAAAAGTGCGGGTGGCTGCGCGACTCGGCTTCGAC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8172#0 CCGGAGGTGGCGGGCCAATCGCGGGCGGTCGGGCTCGGTCCGCTCGGCCTGTCCGGCAAC 60
consensus_8172#1 --------------CCGGACGTGCGTGAACGGTTTCTGGCCAAA-GTCTCGCTCCCGATT 45
** ** * * * *** ** * ** * * * * *
consensus_8172#0 ACGGCGTACTTTGGCCTGCTCGAGATTTGCAAACCGAAGCCGGGCGAAACGGTGGTGGTG 120
consensus_8172#1 ACATCGTACGC-GACCAGC--AGGATCCTAAGAAGGGGTCAAAGTACAGCACAAGTCACG 102
** ***** * ** ** *** * * * * * * * ** *
consensus_8172#0 AGTGCGGCGGCCGGTGCCGTCGGCAGCCTGGTCGGCCAGATCGCGAAGAT-TAAGGGCTG 179
consensus_8172#1 GGAGTGTCCGCAAGCAAAG--GATGGT---GCTGGCAAGGAAGTGGATGTACGTGCGGCG 157
* * * * ** * * * * * *** ** * * * * * * *
consensus_8172#0 CCACGTGGTGGGGCTGGCCGGCACGGAGGAAAAGTGCGGGTGGCTGCGCGAGCTCGGCTT 239
consensus_8172#1 CCCGGAAGGGGAACCGAAGGAGACCGATTTCGCGCTCAAGGAGGAGGAGCTGCCGGCCCT 217
** * * ** * * * ** ** * * * * * ** * * *
consensus_8172#0 CGACGCGGTCGTCAACTATCGGGCCGGATCGGTGCGGGAGCAGCTGGCCGCGGCAACGCC 299
consensus_8172#1 CGAGGCGGAAG---ATTTCCTCGTCGAGACGGAGTACTTCAGCCTGGATGCGGGACTGCG 274
*** **** * * * * * ** *** * **** **** * **
consensus_8172#0 CCGCGGCGTCGACTGCTACTTCGACAACGTGGGCGGCGAGCTGACGGAGCTGGTGCGCGA 359
consensus_8172#1 CGGGTACATGGAGCTCGGGGCCCTGCCCGTCGGCAGCCCCGTCATCGGGATGGCCCTCGC 334
* * * * ** * * *** *** ** * * * * *** * **
consensus_8172#0 GCGCATGAACCTGTACGGGCGCATCTCGGTGTGCGGCGCCGTTTCGAGCTACAACGGGCA 419
consensus_8172#1 GAAGGTGATCGAGTCGCGGAACG-CCCAGTTCCCGGT--CGGTGCGGTCGTCTGTGCCCG 391
* *** * ** ** * * * ** *** ** * ** * * * *
consensus_8172#0 GCCGGCCCAGGTGGCCGACCCGCAGCGCGACTACGTCTCGAAGCAGCTCCGGCAGGAAGG 479
consensus_8172#1 GCTCGGCTGGGTCACGCACGC-CGTCCTGA--ACCAGCAGCAGCAGAAGGAGCTGCGGCC 448
** * * *** * ** * * * ** ** * ***** ** *
consensus_8172#0 GTTCGTCGT-CTTCCGGTGGCTGCCCCGCTG--GATGGAGGGCATCGGCCAGATGCGCGA 536
consensus_8172#1 GTACATCGTGCCGGAGGTGGCGGGCCAATCGCGGGCGGTCGGGCTCGGTCCGCTCGGCCT 508
** * **** * ****** * ** * * ** ** **** * * * **
consensus_8172#0 ATGGCTCGA-GCAGGGCAAGCTGGTCCACCGGGAAACCGTGTACGAGGGGTTCGACAGTG 595
consensus_8172#1 GTCCGGCAACACGGCGTACTTTGGCCTGCTCGAGATTTGCAAACC-GAAGCCGGGCGAAA 567
* * * * * * * *** * * * * * ** * * * *
consensus_8172#0 CGCCGC--GCTCGTTCATCAGCATGCTGCAGGGCGGCAACATTGGCAAGGCGGTCGTGAA 653
consensus_8172#1 CGGTGGTGGTGAGTGCGGCGGC-CGGTGCCGT-CGGCAGCCTGGTCGGCCAGATCGCGAA 625
** * * ** * * ** * *** * ***** * * * * * *** ***
consensus_8172#0 GGTGTAGTGCGCGCCCCGCCCTACCGCTGTCGCTCTTTGCACGGGGGCGCCGGCTCGTTC 713
consensus_8172#1 GATTAAGGGC-TGCCACGTGGTGGGGCTGGCCGGCACGGAGGAAAAGTGCGGGTGGCTGC 684
* * ** ** *** ** * **** * * * * ** ** * *
consensus_8172#0 CCTCCGCCGTGGTACCGCCGGCAGTGGTTCTTCAGCAGACACTTGTACTGGAAGCGCTTG 773
consensus_8172#1 GCGACTCGGCTTCGACGCGGTCGTCAACTATCGGGCCGG-ATCGGTGCGGGACA-GCTGG 742
* * * * *** * * * * ** * * ** * *** *** *
consensus_8172#0 TCGCAGTCGGCGCACGGGTACGGCTTGTCGTTCGTGTGGATGCGCATGTGAACCCGGAGC 833
consensus_8172#1 CCGCGG-CAACGCCCG----CGGCGT-TCCACCGGGAAACCGTGTACGAGGGGTTCGACA 796
*** * * *** ** **** * ** ** * * * * * * **
consensus_8172#0 GTGTAC-GCGATCGT-- 847
consensus_8172#1 GTTCGCCGCGCTCGTTC 813
** * *** ****
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||