These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8186#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1066 fasta sequence [ATGTTTTCTCTCGGTTCTTGAACCTATTTATATGGCGTTGAGAAACAGAAGTAAAGTGTATGGAAACCGAGAAGAAGCAGCTAGAGAAGTAAACAGAATGAATAAACCCCTTTCTATACACGTCAAATGCATTGATATTATAACTTTAATATTGAAAATAGACTGATATATCTATAGACGAGTCGAGGATACATCACCGTACACCAGAAGTGCAGACCAGCAAACTTAAACGTGCAGAAATGAGTGAATGAACAAATAGAAAAGACAAAAAAACTCGTAAAAAACGACTACTCCAGCAAGATCTTTGAGCAGGAATGGAAACAAAGTACTAATCAAACAACCTCCCAGGCTTCTGGTAGAAGCAAGCTAAAAGAGTTGTCAGCAGGAAACAAACTTTGTGTCGTGCTTGATCGCGCAGCATCGATAAACGTTATTGCGCTTCTTTTCGTTTAGGCGAAGCTATCGCAAACTCGTCGTTGTTAGCTGTGTTGTTTGCGCACTCGCTGCGCAACGATACAACATGGTTGCCATGGCTATGGAACAACATTCTCGGATGGACAGCTTCTTGGTAAGCAAAGGGAAAGTGAACCTCATAGTCCCCAGGGAAGTTAGTTATGCTTTGCCGCATCCACAACCGGTGCGGATCCGTGCGGACGGTATGGGATGTGCGCAGTCCGGTGCTTTCTAATCGCTTGCGCAAAGCTCGTTTAAAAAAGCTTCTGTGTGCTCACGTGTCTTGCAGATGCATGTGAAAGCATTGCTTTGGTATTGTTTTAGGGTACTCACTTGTTTAAATCGATTCATAATGGAACACAGACACCCACGGTCACATGCCGATCTACACAATAGCCCTGGAATATGATAGGTATGAAAATCTGAGCGCGCCTGACTCGAACAAAACATAGAACAAAAAAAAAAAAAACAAGTTCACTAAGCAAATTGGAAACAATGCAAACAAACCCCCGTAACATGTA-CTAAACCCCTCACCAACAGGAAAACACAGCGAAAACCAGTGATTGAACCAGTAATTGTTTTAGGCCTGTACGACAAGGAATGAATAAAATGA] [+] EMBL BX618026 [ATGTTTTCTCTCGGTTCTTGAACCTATTTATATGGCGTTGAGAAACAGAAGTAAAGTGTATGGAAACCGAGAAGAAGCAGCTAGAGAAGTAAACAGAATGAATAAACCCCTTTCTATACACGTCAAATGCATTGATATTATAACTTTAATATTGAAAATAGACTGATATATCTATAGACGAGTCGAGGATACATCACCGTACACCAGAAGTGCAGACCAGCAAACTTAAACGTGCAGAAATGAGTGAATGAACAAATAGAAAAGACAAAAAAACTCGTAAAAAACGACTACTCCAGCAAGATCTTTGAGCAGGAATGGAAACAAAGTACTAATCAAACAACCTCCCAGGCTTCTGGTAGAAGCAAGCTAAAAGAGTTGTCAGCAGGAAACAAACTTTGTGTCGTGCTTGATCGCGCAGCATCGATAAACGTTATTGCGCTTCTTTTCGTTTAGGCGAAGCTATCGCAAACTCGTCGTTGTTAGCTGTGTTGTTTGCGCACTCGCTGCGCAACGATACAACATGGTTGCCATGGCTATGGAACAACATTCTCGGATGGACAGCTTCTTGGTAAGCAAAGGGAAAGTGAACCTCATAGTCCCCAGGGAAGTTAGTTATGCTTTGCCGCATCCACAACCGGTGCGGATCCGTGCGGACGGTATGGGATGTGCGCAGTCCGGTGCTTTCTAATCGCTTGCGCAAAGCTCGTTTAAAAAAGCTTCTGTGTGCTCACGTGTCTTGCAGA ] [+] EMBL BX614386 [ AACAAATAGAAAAGACAAAAAAACTCGTAAAAAACGACTACTCCAGCAAGATCTTTGAGCAGGAATGGAAACAAAGTACTAATCAAACAACCTCCCAGGCTTCTGGTAGAAGCAAGCTAAAAGAGTTGTCAGCAGGAAACAAACTTTGTGTCGTGCTTGATCGCGCAGCATCGATAAACGTTATTGCGCTTCTTTTCGTTTAGGCGAAGCTATCGCAAACTCGTCGTTGTTAGCTGTGTTGTTTGCGCACTCGCTGCGCAACGATACAACATGGGTGCCATGGCTATGGAACAACATTCTCGGATGGACAGCTTCTTGGTAAGCAAAGGGAAAGTGAACCTCATAGTCCCCAGGGAAGTTAGTTATGCTTTGCCGCATCCACAACCGGTGCGGATCCGTGCGGACGGTATGGGATGTGCGCAGTCCGGTGCTTTCTAATCGCTTGCGCA ] [+] EMBL BX610834 [ AAAAAAACTCGTAAAAAACGACTACTCCAGCAAGATCTTTGAGCAAGAATGGAAACAAAGTACTAATCAAACAACCTCCCAGGCTTCTGGTAGAAGCAAGCTAAAAGAGTTGTCAGCAGGAAACAAACTTTGTGTCGTGCTTGATCGCGCAGCATCGATAAACGTTATTGCGCTTCTTTTCGTTTAGGCGAAGCTATCGCAAACTCGTCGTTGTTAGCTGTGTTGTTTGCGCACTCGCTGCGCAACGATACAACATGGTTGCCATGGCTATGGAACAACATTCTCGGATGGACAGCTTCTTGGTAAGCAAAGGGAAAGTGAACCTCATAGTCCCCAGGGAAGTTAGTTATGCTTTGCCGCATCCACAACCGGTGCGGATCCGTGCGGACGGTATGGGATGTGCGCAGTCCGGTGCTTTCTAATCGCTTGCGCAAAGCTCGTTTAAAAAAGCTTCTGTGTGCTCACGTGTCTTGCAGATGCATGTGAAAGCATTGCTTTGGTATTGTTCTAGGGTACTCACTTGTTTAAATCGATTC ] [+] EMBL BX610835 [ GTAAAAAACGACTACTCCAGCAAGATCTTTGAGCAGGAATGGAAACAAAGTACTAATCAAACAACCTCCCAGGCTTCTGGTAGAAGCAAGCTAAAAGAGTTGTCAGCAGGAAACAAACTTTGTGTCGTGCTTGATCGCGCAGCATCGATAAACGTTATTGCGCTTCTTTTCGTTTAGGCGAAGCTATCGCAAACTCGTCGTTGTTAGCTGTGTTGTTTGCGCACTCGCTGCGCAACGATACAACATGGTTGCCATGGCTATGGAACAACATTCTCGGATGGACAGCTTCTTGGTAAGCAAAGGGAAAGTGAACCTCATAGTCCCCAGGGAAGTTAGTTATGCTTTGCCGCATCCACAACCGGTGCGGATCCGTGCGGACGGTATGGGATGTGCGCAGTCCGGTGCTTTCTAATCGCTTGCGCAAAGCTCGTTTAAAAAAGCTTCTGTGTGCTCACGTGTCTTGCAGATGCATGTGAAAGCATTGCTTTGGTATTGTTTTAGGGTACTCACTTGTTTAAATCGATTCATAATGGAACACAGACACCCACGGTCACATGCC ] [-] EMBL CNS08NPX [ TAAACGTTATTGCGCTTCTTTTCGTTTAGGCGAAG TATCGCAAACTCGTCGTTGTTAGCTGTGTTGTTTGCGCACT CTGCGCAACGATACAACATGGTTGCCATGGCTATGGAACAACATTCTCGGATGGACAGCTTCTTGGTGAGCAAAGGGAAAGTGAACCTCATAGTCCCCAGGGAAGTTAGTTATGCTTTGCCGCATCCACAACCGGTGCGGATCCGGGCGGACGGTATGGGATGTGCGCAGTCCGGTGCTTTCTAATCGCTTGCGCAAAGCTCGTTTAAAAAAGCTTCTGTGTGCCCACGTGTCTTGCAGATGCATGTGAAAGCATTGCTTTGGTATTGTTTTAGGGTACTCACTTGTTTAAATCGATTCATAATGGAACACAGATACCCACGGTCACATGCCGATCTACACAATAGCCCTGGAATATGATAGGTATGAAAATCTGAGCGCGCCTGACTCGAACAAAACATAGAACAAAAAAAAAAAAAACAAGTTCACTAAGCAAATTGGAAACAATGCAAACAAACCCCCGTAACATGTA CTAAACCCCTCACCAACAGGAAAACACAGCGAAAACCAGTGATTGAACCAGTAATTGTTTTAGGCCTGTACGACAAGGAATGAATAAAATGA] [-] EMBL CNS08PVO [ CCCGTAACATGTATCTAAACCCCTCACCAACAGGAAAACACAGCGAAAACCAGTGATTGAACCAGTTATTGTTTTAGGCCTG ] consensusID : consensus_8186#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 585 fasta sequence [AAGAATCGGCACGAGGGNNNAAACCCCTTTCTATACACGTCACATGCATTGATATTATAACTTTAATATTGAAAATAGACTGATATATCTATAGACGAGTCGAGGATACATCACCGTACACCAGAAGCGCAGACCAGCAAACTTAAGACGTGCAGAAATGAGTGAATGAACAAATAGAAAAGACAAAAAAAAACTCGTAAAAAAAGACCACTCCAGCAAGATCTTTGAGCTGGATGGATGGAAACAAAGTACTGAAGTCAAAGCAACCTCCCAGGCGTTCTGGGTAGAAGCAAGTTAAANAGAGTTGTCAGCAGGAAACAAACTGTTGTGTCGTGCGTTGATCGCGCAGCAGTCGATAAACGTNATTGCGCTGTCATTTGCGTGTTAGGCGAAGCGTATCGCAAACGTCGTCGGTTGTTAGCTGTGTNGTGTGCGCACGTCGCGTGCGCAANGATACAACATGGTTGCCATGGCTATGGAACAACAGTTCTCGGATGGACAGCTTCTTGGTAAGCAAAGGGAAAGTGAACCTCAGTAGTCCCCAGGGGNAAGTTNGTGATGCNTAGCCGCGATCCAGCAACCGGN] [+] EMBL BX469308 [AAGAATCGGCACGAGGGNNNAAACCCCTTTCTATACACGTCACATGCATTGATATTATAACTTTAATATTGAAAATAGACTGATATATCTATAGACGAGTCGAGGATACATCACCGTACACCAGAAGCGCAGACCAGCAAACTTAAGACGTGCAGAAATGAGTGAATGAACAAATAGAAAAGACAAAAAAAAACTCGTAAAAAAAGACCACTCCAGCAAGATCTTTGAGCTGGATGGATGGAAACAAAGTACTGAAGTCAAAGCAACCTCCCAGGCGTTCTGGGTAGAAGCAAGTTAAANAGAGTTGTCAGCAGGAAACAAACTGTTGTGTCGTGCGTTGATCGCGCAGCAGTCGATAAACGTNATTGCGCTGTCATTTGCGTGTTAGGCGAAGCGTATCGCAAACGTCGTCGGTTGTTAGCTGTGTNGTGTGCGCACGTCGCGTGCGCAANGATACAACATGGTTGCCATGGCTATGGAACAACAGTTCTCGGATGGACAGCTTCTTGGTAAGCAAAGGGAAAGTGAACCTCAGTAGTCCCCAGGGGNAAGTTNGTGATGCNTAGCCGCGATCCAGCAACCGGN] consensusID : consensus_8186#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 506 fasta sequence [GAATCCCCCGAGGTTTGGAACAACATTCTCGGATGGACAGCTTCTTGGTAAGCAAAGGGAAAGTGAACCTCATAGTCCCCAGGAAGTTAGTTATGCTTTGCCGCATCCACAACCGGTGCGGATCCGTGCGGACGGTATGGGATGTGCGCAGTCCGGTGCTTTCTAATCGCTTGCGCAAAGCTCGTTTAAAAAAGCTTCTGTGTGCTCACGTGTCTTGCAGATGCATGTGAAAGCATTGCTTTGGTATTGTTTTAGGGTACTCACTTGTTTAAATCGATTCATAATGGAACACAGACACCCACGGTCACATGCCGATCTACACAATAGCCCTGGAATCTGATAGGTATGAAAATCTGAGCGCGCCTGACTCGAACAAAAAATAGAACAAAAAAAAAAAAACAAGTTCACTGAGCAAATTGGAAACAATGCAAACAAACCCCCGTAACATGTACTAAACCCCTCACCAACAGGAAAACACAGCGAAAACCAGTGATTGAACCAGTAAC] [+] EMBL AL692459 [GAATCCCCCGAGGTTTGGAACAACATTCTCGGATGGACAGCTTCTTGGTAAGCAAAGGGAAAGTGAACCTCATAGTCCCCAGGAAGTTAGTTATGCTTTGCCGCATCCACAACCGGTGCGGATCCGTGCGGACGGTATGGGATGTGCGCAGTCCGGTGCTTTCTAATCGCTTGCGCAAAGCTCGTTTAAAAAAGCTTCTGTGTGCTCACGTGTCTTGCAGATGCATGTGAAAGCATTGCTTTGGTATTGTTTTAGGGTACTCACTTGTTTAAATCGATTCATAATGGAACACAGACACCCACGGTCACATGCCGATCTACACAATAGCCCTGGAATCTGATAGGTATGAAAATCTGAGCGCGCCTGACTCGAACAAAAAATAGAACAAAAAAAAAAAAACAAGTTCACTGAGCAAATTGGAAACAATGCAAACAAACCCCCGTAACATGTACTAAACCCCTCACCAACAGGAAAACACAGCGAAAACCAGTGATTGAACCAGTAAC] consensusID : consensus_8186#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 250 fasta sequence [CGCAACGATACAACAGGGTTGCCATGGCTATGGAACAACATCCTCGGAAGGACAGCTACGAGGTAAGCAAAGGGAAAGTGAACCTCATAGTCCCCAGGGAAGTAAGTAATGCTAAGCCGCATCCACAACCGGGGCGGATCCGTGCGGACGGGATGGGATGTGCGCAGTCCGGGGCTCGCTAATCGCTGGCGCAAAGCTCGTAAAAAAAAGCTACTGTGTGCTCACGTGTCTAGCAGAAGCATGTGAAAGC] [+] EMBL BX612564 [CGCAACGATACAACAGGGTTGCCATGGCTATGGAACAACATCCTCGGAAGGACAGCTACGAGGTAAGCAAAGGGAAAGTGAACCTCATAGTCCCCAGGGAAGTAAGTAATGCTAAGCCGCATCCACAACCGGGGCGGATCCGTGCGGACGGGATGGGATGTGCGCAGTCCGGGGCTCGCTAATCGCTGGCGCAAAGCTCGTAAAAAAAAGCTACTGTGTGCTCACGTGTCTAGCAGAAGCATGTGAAAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8186#2 ------------------------------------------------------------ consensus_8186#3 ------------------------------------------------------------ consensus_8186#0 ATGTTTTCTCTCGGTTCTTGAACCTATTTATATGGCGTTGAGAAACAGAAGTAAAGTGTA 60 consensus_8186#1 ------------------------------------------------------------ consensus_8186#2 ------------------------------------------------------------ consensus_8186#3 ------------------------------------------------------------ consensus_8186#0 TGGAAACCGAGAAGAAGCAGCTAGAGAAGTAAACAGAATGAATAAACCCCTTTCTATACA 120 consensus_8186#1 ------------------------------------------------------------ consensus_8186#2 ------------------------------------------------------------ consensus_8186#3 ------------------------------------------------------------ consensus_8186#0 CGTCAAATGCATTGATATTATAACTTTAATATTGAAAATAGACTGATATATCTATAGACG 180 consensus_8186#1 ------------------------------------------------------------ consensus_8186#2 ------------------------------------------------------------ consensus_8186#3 ------------------------------------------------------------ consensus_8186#0 AGTCGAGGATACATCACCGTACACCAGAAGTGCAGACCAGCAAACTTAAACGTGCAGAAA 240 consensus_8186#1 ------------------------------------------------------------ consensus_8186#2 ------------------------------------------------------------ consensus_8186#3 ------------------------------------------------------------ consensus_8186#0 TGAGTGAATGAACAAATAGAAAAGACAAAAAAACTCGTAAAAAACGACTACTCCAGCAAG 300 consensus_8186#1 ------------------------------------------------------------ consensus_8186#2 ------------------------------------------------------------ consensus_8186#3 ------------------------------------------------------------ consensus_8186#0 ATCTTTGAGCAGGAATGGAAACAAAGTACTAATCAAACAACCTCCCAGGCTTCTGGTAGA 360 consensus_8186#1 ------------------------------------------------------------ consensus_8186#2 ------------------------------------------------------------ consensus_8186#3 ------------------------------------------------------------ consensus_8186#0 AGCAAGCTAAAAGAGTTGTCAGCAGGAAACAAACTTTGTGTCGTGCTTGATCGCGCAGCA 420 consensus_8186#1 ------------------------------------------------------------ consensus_8186#2 ------------------------------------------------------------ consensus_8186#3 ------------------------------------------------------------ consensus_8186#0 TCGATAAACGTTATTGCGCTTCTTTTCGTTTAGGCGAAGCTATCGCAAACTCGTCGTTGT 480 consensus_8186#1 ------------------------------------------------------------ consensus_8186#2 -----------------------------------------GAATCCCC-CGAGGTTTGG 18 consensus_8186#3 --------------------------CGCAACGATACAACAGGGTTGCC-ATGGCTATGG 33 consensus_8186#0 TAGCTGTGTTGTTTGCGCACTCGCTGCGCAACGATACAACATGGTTGCC-ATGGCTATGG 539 consensus_8186#1 ---------------------------------------AAGAATCGGCACGAGGGNNNA 21 * * * consensus_8186#2 AACAACATTCTCGGATGGACAGCTTC-TTGGTA----AGC----AAAGGGAAAGTGAACC 69 consensus_8186#3 AACAACATCCTCGGAAGGACAGCTAC-GAGGTA----AGC----AAAGGGAAAGTGAACC 84 consensus_8186#0 AACAACATTCTCGGATGGACAGCTTC-TTGGTA----AGC----AAAGGGAAAGTGAACC 590 consensus_8186#1 AACCCCTTTCTATACACGTCACATGCATTGATATTATAACTTTAATATTGAAAATAGACT 81 *** * * ** * ** * * * ** * * * * **** * ** consensus_8186#2 TCATAGTCCCCAGG-AAGTTAGTTATGCTTTGCCGCATCCACAACCGGTGCGGATCCGTG 128 consensus_8186#3 TCATAGTCCCCAGGGAAGTAAGTAATGCTAAGCCGCATCCACAACCGGGGCGGATCCGTG 144 consensus_8186#0 TCATAGTCCCCAGGGAAGTTAGTTATGCTTTGCCGCATCCACAACCGGTGCGGATCCGTG 650 consensus_8186#1 GATATATCTATAGACGAGTCGAGGATACATCACCGTA--CACCAGAAGCGCAGACCAGCA 139 ** ** *** ** * *** * *** * * ** ** * * consensus_8186#2 CGGACGGTATGGGATGTGCGCAGTCCGGTGCTTTCTA--ATCGCTTGCGCAAAGCTCGTT 186 consensus_8186#3 CGGACGGGATGGGATGTGCGCAGTCCGGGGCTCGCTA--ATCGCTGGCGCAAAGCTCGTA 202 consensus_8186#0 CGGACGGTATGGGATGTGCGCAGTCCGGTGCTTTCTA--ATCGCTTGCGCAAAGCTCGTT 708 consensus_8186#1 AACTTAAGACGTGCAGAAATGAGTGAATGAACAAATAGAAAAGACAAAAAAAAACTCGTA 199 * * * * *** ** * * *** ***** consensus_8186#2 TAAAAAAGCTTCTGTGTGCTCACGTGTCTTGCAGATGCATGTGAA---AGCATTGCTTTG 243 consensus_8186#3 AAAAAAAGCTACTGTGTGCTCACGTGTCTAGCAGAAGCATGTGAA---AGC--------- 250 consensus_8186#0 TAAAAAAGCTTCTGTGTGCTCACGTGTCTTGCAGATGCATGTGAA---AGCATTGCTTTG 765 consensus_8186#1 AAAAAAGACCACTCCAGCAAGATCTTTGAGCTGGATGGATGGAAACAAAGTACTGAAGTC 259 ***** * ** * * * ** * *** ** ** consensus_8186#2 GTATTGTTTTAGGGTACTCACTTGTTTAAATCGATTCATAATGGAACACAGACACCCACG 303 consensus_8186#3 ------------------------------------------------------------ consensus_8186#0 GTATTGTTTTAGGGTACTCACTTGTTTAAATCGATTCATAATGGAACACAGACACCCACG 825 consensus_8186#1 AAAGCAACCTCCCAGGCGTTCTGGGTAGAAGCAAGTTAAANAGAGTTGTCAGCAGGAAAC 319 consensus_8186#2 GTCACATGCCGATCTACACAATAGCCCTGGAATCTGATAGGTATGAAAATCTGAGCGCGC 363 consensus_8186#3 ------------------------------------------------------------ consensus_8186#0 GTCACATGCCGATCTACACAATAGCCCTGGAATATGATAGGTATGAAAATCTGAGCGCGC 885 consensus_8186#1 AAACTGTTGTGTCGTGCGTTGATCGCGCAGCAGTCGATAAACGTNATTGCGCTGTCATTT 379 consensus_8186#2 CTGACTCGAACAAAAAATAGAACAAAAAAAAAAAAA-CAAGTTCACTGAGCAAATTGGAA 422 consensus_8186#3 ------------------------------------------------------------ consensus_8186#0 CTGACTCGAACAAAACATAGAACAAAAAAAAAAAAAACAAGTTCACTAAGCAAATTGGAA 945 consensus_8186#1 GCGTGTTAGGCGAAGCGTATCGCAAACGTCGTCGGT---TGTTAGCTGTGTNGTGTGCGC 436 consensus_8186#2 ACAATGCAAACAAACCCCCGTAACATGTACTAAACCCCTCACCAACAGGAAAACACAGC- 481 consensus_8186#3 ------------------------------------------------------------ consensus_8186#0 ACAATGCAAACAAACCCCCGTAACATGTACTAAACCCCTCACCAACAGGAAAACACAGC- 1004 consensus_8186#1 ACGTCGCGTGCGCAANGATACAACATGGTTGCCATGGCTATGGAACAACAGTTCTCGGAT 496 consensus_8186#2 -GAAAACCAGTGATTGAACCAGTAAC---------------------------------- 506 consensus_8186#3 ------------------------------------------------------------ consensus_8186#0 -GAAAACCAGTGATTGAACCAGTAATTGTTTTAGGCCTGTACGACAAGGAATGAATAAAA 1063 consensus_8186#1 GGACAGCTTCTTGGTAAGCAAAGGGAAAGTGAACCTCAGTAGTCCCCAGGGGNAAGTTNG 556 consensus_8186#2 ----------------------------- consensus_8186#3 ----------------------------- consensus_8186#0 TGA-------------------------- 1066 consensus_8186#1 TGATGCNTAGCCGCGATCCAGCAACCGGN 585 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||