|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8202#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1282 fasta sequence
[TAGCCACAGTTCACCACTACTCTTTGCACGCGTCTGTTGCTCTTCAATTTTCAATCAACAATTGAATCTGTGACCATCAACCTTTGAAAACAAAGCAAAG-GGTGTCGCTTCGTGAACGGTGAAATTACAGTGATAATGGATATCGTGCATCCGTTCGGTGTTCCCCGCGAGGGAGGCCAGTCGTCCAGCAGCCAGCCCTATTACCCCGGGGCTCCCCTTTTTCCCGCACACACCTACAACGCCAATAGGAGCAGTACGAACGGCGGCACGGCCGGCAGCATCTTCGGAGGAGGCATATCATCCGGCCAAACCACCCACAACACCATGGCCAACGAAATGATGGACACCGTCCCCGTCCTCATAAGCACACCCAACACCACCACCTCCTCCTCTGTTGTCGCCAACAACCAACTCCAGCTGAAACCGGTTCTCGGTAAGCTGAATAGAAAAGCGGCCAAGGGAGGAGGAAGTCAGTGGTGCAAGCTGGCCCATCGGGCGCAACCCATGAGCGCATTCGACGCGCTGTGCAATCTTTGCGGCGCGAACAGCTCGGAATTCAACGTCCGCACCAACGGGCACGAGACGATGGTGCAAACCATCTTCAACGCGATGCAGTACCAAGCGGTGGCACCAAACGAATTCCTCGCCAAGGAAAAGGTGTCCGAGGAGGTGCTGCGTGACATTTATTTGCCGCGGCTGGCAGCCCACAAGGATCAATCGGAGACGGGCGCGATGATGGATACGTCCACGCAAAACGGTATGGAGGCAGAGGAGGACCCGGATGCTAAGACAACACTATTGTTGGCGCAGAACCTGGTCTCGTTTGCGCTGTACAAACTGTTTGCCAAATGGAACGTGCAGCCAAAGCCGACAAAGGTGAAGGAACAACCATCGAAAAATGGTGTGATCAGGTGCCGGGAGCAACTGCCGGTCAATCCAACCAGCCACCATCCGGCGACGCTACTGTCGATCATGGTAACACCCGTATCGTTTGAGGATGTCGGCGAAACCGTCGTGAGTCCGGCAC-GACGAACTTTGTGGCCCGGGTGACGGTGGGCGAACAATCGTTTACTGGCACGGGGCAATCGAAAAAGGTGGCCCGTAAGATGGCAGCATCGGAAGCGTGCAAGGCACTGTTTGGCGTAAACTACGGTGTTCTTCAGGGTTAGAGGGTGACCAATCATTGATGAAGCATAATGAACTGTTTTGCCGCAAAAAGTATGCGCGCACTGTTATTCGTTGAACAGCGAAGTAAAACAAAAGTGGAATTGAATTTGAATAA]
[+] EMBL CNS09R9Z [TAGCCACAGTTCACCACTACTCTTTGCACGCGTCTGTTGCTCTTCAATTTTCAATCAACAATTGAATCTGTGACCATCAACCTTTGAAAACAAAGCAAAG GGTGTCGCTTCGTGAACGGTGAAATTACAGTGATAATGGATATCGTGCATCCGTTCGGTGTTCCCCGCGA GGAGGCCAGTCGTCCAGCAGCCAGCCCTATTACCCCGGGGCTCCCCTTTTTCCCGCACACACCTACAACGCCAATAGGAGCAGTACGAACGGCGGCACGGCCGGCAGCATCTTCGGAGGAGGCATATCATCCGGCCAAACCACCCACAACACCATGGCCAACGAAATGATGGACACCGTCCCCGTCCTCATAAGCACACCCAACACCACCACCTCCTCCTCTGTTGTCGCCAACAGCCAACTCCAGCTGAAACCGGTTCTCGGTAAGCTGAATAGAAAAGCGGCCAAGGGAGGAGGAAGTCAGTGGCGCAAGCTGGCCCATCGGGCGCAACCCATGAGCGCATTCGACGCGCTGTGCAATCTTTGCGGCGCGAACAGCTCGGAATTCAACGTCCGCACCAACGGGCACGAGACGATGGTGCAAACCATCTTCAACGCGATGCAGTACCAAGCGGTGGCACCAAACGAATTCCTCGCCAAGGAAAAGGTGTCCGAGGAGGTGCTGCGTGACATTTATTTGCCGCGGCTGGCAGCCCACAAGGATCAATCGGAGACGGGCGCGATGATGGATACGTCCACGCAAAACGGTATGGAGGCAGAGGAGGACCCGGATGCTAAGACAACACTATTGTTGGCGCAGAACCTGGTCTCGTTTGCGCTGTACAAACTGTTTGCCAAATGGAACGTGCAGCCAAAGCCGACAAAGGTGAAGGAACAACCATCGAAAAATGGTGTGATCATGTGCCGGGAG ]
[+] EMBL CNS09OF3 [ AACAATTGAATCTGTGACCATCAACCTTTGAAAACAAAGCAAAG GGTGTCGCTTCGTGAACGGTGAAATTACAGTGATAATGGATATCGTGCATCCGTTCGGTGTTCCCCGCGAGGCAGGCCAGTCGTCCAGCAGCCAGCCCTATTACCCCGGGGCTCCCCTTTTTCCCGCACACACCTACAACGCCAATAGGAGCAGTACGAACGGCGGCACGGCCGGCAGCATCTTCGGAGGAGGCATATCATCCGGCCAAACCACCCACAACACCATGGCCAACGAAATGATGGACACCGTCCCCGTCCTCATAAGCACACCCAACACCACCACCTCCTCCTCTGTTGTCGCCAACAACCAACTCCAGCTGAAACCGGAAAACGGTAAGCTGAATAGAAAAGCGGCCAAGGGAGGAGGAAGTCAGTGGTGCAAGCTGGCCCATCGGGCGCAACCCATGAGCGCATTCGACGCGCTGTGCAATCTTTGCGGCGCGAACAGCTCGGAATTCAACGTCCGCACCAACGGGCACGAGACGATGGTGCAAACCATCTTCAACGCGATGCAGTACCAAGCGGTGGCACCAAACGAATTCCTCGCCAAGGAAAAGGTGTCCGAGGAGGTGCTGCGTGACATTTATTTGCCGCGGCTGGCAGCCCACAAGGATCAATCGGAGACGGGCGCGATGATGGATACGTCCACGCAAAACGGTATGGAGGCAGAGGAGGACAAGGATGCTAAGACAACACTATTGTTGGCGCAGAACCTGGTCTCGTTTGCGCTGTACAAACTGTTTGCCAAATGGAACGTGCAGCCAAAGCCGACAAAGGTGAAGGAACAACCATCGAAAAATGGTGTGATCAGGTGCCGGGAGCAACTGCCGGTCAATCCAACCAGCCACCATCCGGCGACGCTACTTTCGATCATGGTAACACCCGTATCGTTTGA ]
[+] EMBL CNS08VWI [ GAATCTGTGACCATCAACCTTTGAAAACAAAGCAAAGCGTTGTCGCTTCGTGAACGGTGAAATTACAGTGATAATGGATATCGTGCATCCGTTCGGTGTTCCCCGCGAGGGAGGCCAGTCGTCCAGCAGCCAGCCCTATTACCCCGGGGCTCCCCTTTTTCCCGCACACACCTACAACGCCAATAGGAGCAGTACGAACGGCGGCACGGCCGGCAGCATCTTCGGAGGAGGCATATCATCCGGCCAAACCACCCACAACACCATGGCCAACGAAATGATGGACACCGTCCCCGTCCTCATAAGCACACCCAACACCACCACCTCCTCCTCTGTTGTCGCCAACAACCAACTCCAGCTGAAACCGGTTCTCGGTAAGCTGAATAGAAAAGCGGCCAAGGGAGGAGGAAGTCAGTGGTGCAAGCTGGCCCATCGGGCGCAACCCATGAGCGCATTCGACGCGCTGTGCAATCTTTGCGGCGCGAACAGCTCGGAATTCACCGTCCGCACCAACGGGCACGAGACGATGGTGCAAACCATCTTCAACGCGATGCAGTACCAAGCGGTGGCACCGAACGAATTCCTCGCCAAGGAAAAGGTGTCCGAGGAGGTGCTGCGTGACATTTACTTGCCGCGGCTGGCAGCCCCCCAGGAACAATCGGAGACGGGTGCGACGATGGATACGTCCACGCAAAACGATATGGAGGCAGAGGAGGACCCGGATGCTAAGACAACACTGCTGTTGGCGCAGAACCTGGTCTCGTTTGCGCTGTACAAACTGTTTGCCAAATGGAACGTGCAGCCAAAGCCGACAAAGGTGAAGGAACAACCATCGAAAAATGGTGTGATCAGGTGCCGGGAGCAACTGCCGGTCAATCCAACCAGCCACCATCCGGCGACGCTACTGTCGATCATGGTAACACCCGTATCGTTTGAGGATGTCGGCGAAACCGTCGTGAGTTCGGCAC GAGAAACTTTGTGGCCCGGGTG ]
[+] EMBL CNS095A6 [ CAACACCACCACCTCCTCCTCTGTTGTCGTTAATAACCAACTCCAGCTGAAACCGGTTCTCGGTAAGCTGAATAGAAAAGCGGCCAAGGGAGGAGGAAGTCAGTGGTGCAAGCTGGCCCATCGGGCGCAACCCATGAGCGCATTCGACGCGCTGTGCAATCTTTGCGGCGCGAACAGCTCGGAATTCACCGTCCGCACCAACGGGCACGAGACGATGGTGCAAACCATCTTCAACGCGATGg ]
[-] EMBL CNS095A7 [ CTCTGTTGTCGCCAACAACCAACTCCAGCTGAAACCGGTTCTCGGTAAGCTGAATAGAAAAGCGGCCAAGGGAGGAGGAAGTCAGTGGTGCAAGCTGGCCCATCGGGCGCAACCCATGAGCGCATTCGACGCGCTGTGCAATCTTTGCGGCGCGAACAGCTCGGAATTCACCGTCCGCACCAACGGGCACGAGACGATGGTGCAAACCATCTTCAACGCGATGCAGTACCAAGCGGTGGCACCGAACGAATTCCTCGCCAAGGAAAAGGTGTCCGAGGAGGTGCTGCGTGACATTTACTTGCCGCGGCTGGCAGCCCCCCAGGAACAATCGGAGACGGGTGCGACGATGGATACGTCCACGCAAAACGATATGGAGGCAGAGGAGGACCCGGATGCTAAGACAACACTGCTGTTGGCGCAGAACCTGGTCTCGTTTGCGCTGTACAAACTGTTTGCCAAATGGAACGTGCAGCCAAAGCCGACAAAGGTGAAGGAACAACCATCGAAAAATGGTAAGATCAGGTGCCGGGAGCAACTGCCGGTCAATCCAACCAGCCACCATCCGGCGACGCAACTGTCGATCATGGTAACACCCGTATCGTTTGAGGATGTCGGCGAAACCGTCGTGAGTCCGGCACGGACGAACTTTGTGGCCCGGGTGACGGTGGGCGAACAATCGTTCACTGGCACGGGGCAATCGAAAAAGGTGGCCCGTAAGATGGCAGCATCGGAAGCGTGCAAGGCACTGTTgtg ]
[-] EMBL CNS09RA0 [ TCCAGCTGAAACCGGTTCTCGGTAAGCTGAATAGAAAAGCGGCCAAGGGAGGAGGAAGTAAGTGGCGCAAGCTGGCCCATCGGGCGCAACCCATGAGCGCATTCGACGCGCTGTGCAATCTTTGCGGCGCGAACAGCTCGGAATTCAACGTCCGCACCCACGGGCACGAGACGATGGTGCAAACCATCTTCAACGCGATGCAGTACCAAGCGGTGGCACCAAACGAATTCCTCGCCAAGGAAAAGGTGTCCGAGGAGGTGCTGCGTGACATTTATTTGCCGCGGCTGGCAGCCCACAAGGATCAATCGGAGACGGGCGCGATGATGGATACGTCCACGCAAAACGGTATGGAGGCAGAGGAGGACCCGGATGCTAAGACAACACTATTGTTGGCGCAGAACCTGGTCTCGTTTGCGCTGTACAAACTGTTTGCCAAATGGAACGTGCAGCCAAAGCCGACAAAGGTGAAGGAACAACCATCGAAAAATGGTGTGTTCAGGTGCCGGGAGCAACTGCCGGTCAATCCAACCAGCCACCATCCGGCGACGCTACTGTCGATCATGGTTACACCCGTATCGTTTGAGGATGTCGGCGAAACCGTCGTGAGTCCGGCACGGACGAACTTTGTGGCCCGGGTGACGGTAGGCGAACAATCGTTTACTGGCACGGGGCAATCGAAAAAGGTGGCCCGTAAGATGGCAGCATCGGAAGCGTGCAAGGCACTGTTTGGCGTAAACTACGGTGTTCTTCAGGGTTAGAGGGTGACCAATCATTGATGAAGCATAATGAACTGTTTTGCCGCAAAAAGTATGCGCGCACTGTTATTCGTTGAACAGCGAAGTAAAACAAAAGTGGAATTGAATTTGAATAA]
[-] EMBL CNS09OF4 [ AGCTGAAACCGGTTCTCGGTAAGCTGAATAGAAAAGCGGCCAAGGGAGGAGGAAATCAGTGGTGCAAGCTGGCCCATCGGGCGCAACCCATGAGCGCATTCGACGCGCTGTGCAATCTTTGCGGCGCGAACAGCTCGGAATTCAACGTCCGCACCAACGGGCACGAGACGATGGTGCAAACCATCTTCAACGCGATGCAGTACCAAGCGGTGGCACCAAACGAATTCCTCGCCAAGGAAAAGGTGTCCGAGGAGGTGCTGCGTGACATTTATTTGCCGCGGCTGGCAGCCCACAAGGATCAATCGGAGACGGGCGCGATGATGGATACGTCCACGCAAAACGGTATGGAGGCAGAGGAGGACCCGGATGCTAAGACAACACTATTGTTGGCGCAGAACCTGATCTCGTTTGCGCTGTACAAACTGTTTGCCAAATGGAACGTGCAGCCAAAGCCGACAAAGGTGAAGGAACAACCATCGAAAAAT ]
[-] EMBL CNS08VWJ [ AAAACGATTTGGGGGCAGGGGGGGACCCGGATGCTAAGACAAAACTGCTGTTGGCGCAGAACCTGGTCTCGTTTGCGCTGTAAAAACTGTTTGCCAAATGGAACGTGCAGCCAAAGCCGACAAAGGTGAAGGAACAACCATCGAAAAATGGTGTGATCAGGTGCCGGGAGCAACTGCCGGTAAATCCAACCAGCCACCATCCGGCGACGCAACTGTCGATCATGGTAACACCCGTATCGTTTGAGGATGTCGGCGAAACCGTCGTGAGTCCGGCACGGACGAACTTTGTGGCCCGGGTGACGGTGGGCGAACAATCGTTTACTGGCCCGGGGCAATCGAAAAAGGTGGCCCGTAAGATGGCAGCATCGGGAGCGTGCAAGGCACTGTTTGGCCTAAACTACGGCGTTCTTCAGGGTTAGGGGGTGACCAATCATTGATGAAGCA ]
consensusID : consensus_8202#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 337 fasta sequence
[AGAATCGGCACGAGGTNNTACAATCAACAATTGAATCTGTGCACCATCAAACCCTTTGAAAACAAAGCAAAGGGTGTCGCTTCGTGAACGGTGAAATTACAGTGATAATGGATATCGTGCATCCGTTCGGTGTTCCCCGCGAGGGAGGCCAGTCGTCCAGCAGCCAGCCCTATTACCCCGGGGCTCCCCTTTTTCCCGCGACACACCTACAACGCCAATAGGAGCAGTACGAACGGCGGCACGGCCGGCAGCATCTTCGGAGGAGGCATATCATCCGGGCAAACCAGCGCACAACAACATGGCCAACGAAATGATGGACACCGTCCCCGTGCTCATA]
[+] EMBL BX469388 [AGAATCGGCACGAGGTNNTACAATCAACAATTGAATCTGTGCACCATCAAACCCTTTGAAAACAAAGCAAAGGGTGTCGCTTCGTGAACGGTGAAATTACAGTGATAATGGATATCGTGCATCCGTTCGGTGTTCCCCGCGAGGGAGGCCAGTCGTCCAGCAGCCAGCCCTATTACCCCGGGGCTCCCCTTTTTCCCGCGACACACCTACAACGCCAATAGGAGCAGTACGAACGGCGGCACGGCCGGCAGCATCTTCGGAGGAGGCATATCATCCGGGCAAACCAGCGCACAACAACATGGCCAACGAAATGATGGACACCGTCCCCGTGCTCATA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8202#0 TAGCCACAGTTCACCACTACTCTTTGCACGCGTCTGTTGCTCTTCAATTTTCAATCAACA 60
consensus_8202#1 -------------------------------AGAATCGGCACGAGGTNNTACAATCAACA 29
** * * *********
consensus_8202#0 ATTGAATCTGTG-ACCATCAA--CCTTTGAAAACAAAGCAAAGGGTGTCGCTTCGTGAAC 117
consensus_8202#1 ATTGAATCTGTGCACCATCAAACCCTTTGAAAACAAAGCAAAGGGTGTCGCTTCGTGAAC 89
************ ******** *************************************
consensus_8202#0 GGTGAAATTACAGTGATAATGGATATCGTGCATCCGTTCGGTGTTCCCCGCGAGGGAGGC 177
consensus_8202#1 GGTGAAATTACAGTGATAATGGATATCGTGCATCCGTTCGGTGTTCCCCGCGAGGGAGGC 149
************************************************************
consensus_8202#0 CAGTCGTCCAGCAGCCAGCCCTATTACCCCGGGGCTCCCCTTTTTCCCGC-ACACACCTA 236
consensus_8202#1 CAGTCGTCCAGCAGCCAGCCCTATTACCCCGGGGCTCCCCTTTTTCCCGCGACACACCTA 209
************************************************** *********
consensus_8202#0 CAACGCCAATAGGAGCAGTACGAACGGCGGCACGGCCGGCAGCATCTTCGGAGGAGGCAT 296
consensus_8202#1 CAACGCCAATAGGAGCAGTACGAACGGCGGCACGGCCGGCAGCATCTTCGGAGGAGGCAT 269
************************************************************
consensus_8202#0 ATCATCCGGCCAAACCACC-CACAACACCATGGCCAACGAAATGATGGACACCGTCCCCG 355
consensus_8202#1 ATCATCCGGGCAAACCAGCGCACAACAACATGGCCAACGAAATGATGGACACCGTCCCCG 329
********* ******* * ******* ********************************
consensus_8202#0 TCCTCATAAGCACACCCAACACCACCACCTCCTCCTCTGTTGTCGCCAACAACCAACTCC 415
consensus_8202#1 TGCTCATA---------------------------------------------------- 337
* ******
consensus_8202#0 AGCTGAAACCGGTTCTCGGTAAGCTGAATAGAAAAGCGGCCAAGGGAGGAGGAAGTCAGT 475
consensus_8202#1 ------------------------------------------------------------
consensus_8202#0 GGTGCAAGCTGGCCCATCGGGCGCAACCCATGAGCGCATTCGACGCGCTGTGCAATCTTT 535
consensus_8202#1 ------------------------------------------------------------
consensus_8202#0 GCGGCGCGAACAGCTCGGAATTCAACGTCCGCACCAACGGGCACGAGACGATGGTGCAAA 595
consensus_8202#1 ------------------------------------------------------------
consensus_8202#0 CCATCTTCAACGCGATGCAGTACCAAGCGGTGGCACCAAACGAATTCCTCGCCAAGGAAA 655
consensus_8202#1 ------------------------------------------------------------
consensus_8202#0 AGGTGTCCGAGGAGGTGCTGCGTGACATTTATTTGCCGCGGCTGGCAGCCCACAAGGATC 715
consensus_8202#1 ------------------------------------------------------------
consensus_8202#0 AATCGGAGACGGGCGCGATGATGGATACGTCCACGCAAAACGGTATGGAGGCAGAGGAGG 775
consensus_8202#1 ------------------------------------------------------------
consensus_8202#0 ACCCGGATGCTAAGACAACACTATTGTTGGCGCAGAACCTGGTCTCGTTTGCGCTGTACA 835
consensus_8202#1 ------------------------------------------------------------
consensus_8202#0 AACTGTTTGCCAAATGGAACGTGCAGCCAAAGCCGACAAAGGTGAAGGAACAACCATCGA 895
consensus_8202#1 ------------------------------------------------------------
consensus_8202#0 AAAATGGTGTGATCAGGTGCCGGGAGCAACTGCCGGTCAATCCAACCAGCCACCATCCGG 955
consensus_8202#1 ------------------------------------------------------------
consensus_8202#0 CGACGCTACTGTCGATCATGGTAACACCCGTATCGTTTGAGGATGTCGGCGAAACCGTCG 1015
consensus_8202#1 ------------------------------------------------------------
consensus_8202#0 TGAGTCCGGCACGACGAACTTTGTGGCCCGGGTGACGGTGGGCGAACAATCGTTTACTGG 1075
consensus_8202#1 ------------------------------------------------------------
consensus_8202#0 CACGGGGCAATCGAAAAAGGTGGCCCGTAAGATGGCAGCATCGGAAGCGTGCAAGGCACT 1135
consensus_8202#1 ------------------------------------------------------------
consensus_8202#0 GTTTGGCGTAAACTACGGTGTTCTTCAGGGTTAGAGGGTGACCAATCATTGATGAAGCAT 1195
consensus_8202#1 ------------------------------------------------------------
consensus_8202#0 AATGAACTGTTTTGCCGCAAAAAGTATGCGCGCACTGTTATTCGTTGAACAGCGAAGTAA 1255
consensus_8202#1 ------------------------------------------------------------
consensus_8202#0 AACAAAAGTGGAATTGAATTTGAATAA 1282
consensus_8202#1 ---------------------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||