cluster # 8205

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Anopheles gambiae
cluster # 8205 cluster # 8205 Sequences # 9 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8205#0 length = 540 sequences # 6

consensus_8205#1 length = 505 sequences # 3

consensusID : consensus_8205#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 540
fasta sequence

                              [CCGCCCACGCGTCCGA------CCTGTTCGTGATTCGACGAGCCAGTCATCCCAGCAAAAGCTAGCAAAAGATGTCTCTTGGACCGTTCTTCCGCTCACCGTTCACCGACCTGACCGCGTCGATGGTCAACTTCCAGCAGTACGACAAGTGCGGCGAGCTGGAGATGGCTTCGATCGACTGCCTCGAAGCGTACGGTACCGTGCGCGGTGCGAAGAAGTGTGCCGATCTGCTGGCCGACTTCCAGGAGTGCGCGTTCATGACGAAACAGATCGCTAGATTCCGGGCAATGCGAATGGAAAGACATCGTCAGGGATGGAACGGTGAGCGCAAGGGCGATGGATATTACGCACCACCGCCGCGTGTCGATGCCTACTAG-AGAGTGCGTTAGCTGTGAGCACATCCGCAGCCCGGGAGGCACCACCACTAGAGGAATCCGCCTATTCCTTGTAAATTAATATTGAAATACATTCATCCGTTATATAGACAAGACCGGGAATTGTTTCCAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGAGCTGTGGT]

[+] EMBL BM584058             [CCGCCCACGCGTCCGAAACATCCCTGTTCGTGATTCGACGAGCCAGTCATCCCAGCAAAAGCTAGCAAAAGATGTCTCTTGGACCGTTCTTCCGCTCACCGTTCACCGACCTGACCGCGTCGATGGTCAACTTCCAGCAGTACGACAAGTGCGGCGAGCTGGAGATGGCTTCGATCGACTGCCTCGAAGCGTACGGTACCGTGCGCGGTGCGAAGAAGTGTGCCGATCTGCTGGCCGACTTCCAGGAGTGCGCGTTCATGACGAAACAGATCGCTAGATTCCGGGCAATGCGAATGGAAAGACATCGTCAGGGATGGAACGGTGAGCGCAAGGGCGATGGATATTACGCACCACCGCCGCGTGTCGATGCCTACTAGAAGAGTGCGTTAGCTGTGAGCACATCCGCAGCCCGGGAGGCACCACCACTAGAGGAATCCGCCTATTCCTTGTAAATTAATATTGAAATACATTCATCCGTTATATAG                                                              ]
[+] EMBL BM587657             [CCGCCCACGCGTCCG       CCTGTTCGTGATTCGACGAGCCAGTCATCCCAGCAAAAGCTAGCAAAAGATGTCTCTTGGACCGTTCTTCCGCTCACCGTTCACCGACCTGACCGCGTCGATGGTCAACTTCCAGCAGTACGACAAGTGCGGCGAGCTGGAGATGGCTTCGATCGACTGCCTCGAAGCGTACGGTACCGTGCGCGGTGCGAAGAAGTGTGCCGATCTGCTGGCCGACTTCCAGGAGTGCGCGTTCATGACGAAACAGATCGCTAGATTCCGGGCAATGCGAATGGAAAGACATCGTCAGGGATGGAACGGTGAGCGCAAGGGCGATGGATATTACGCACCACCGCCGCGTGTCGATGCCTACTAG AGAGTGCGTTAGCTGTGAGCACATCCGCAGCACGGGAGGCACCACCACTAGAGGAATCCGTCTATTCCTTGTAAATTAATATTGAAATACATTCATCCGTTATATAGACAAGAC                                                       ]
[+] EMBL BM608243             [CCGCGGACGCGTGGGATC    CCTGTTCGTGATTCGACGAGCCAGTCATCCCAGCAAAAGCTAGCAAAAAATGTCTCTTGGACCGTTCTTCCGCTCACCGTTCACCGACCTGACCGCGTCGATGGTCAACTTCCAGCAGTACGACAAGTGCGGCGAGCTGGAGATGGCTTCGATCGACTGCCTCGAAGCGTACGGTACTGTGCGCGGTGCGAAGAAGTGTGCCGATCTGCTGGCCGACTTCCAGGAGTGCGCGTTCATGACGAAACAGATCGCTAGATTCCGGGCAATGCGAATGGAAAGACATCGTCAGGGATGGAACGGTGAGCGCAAGGGTGATGGATATTACGCACCACCGCCGCGTGTCGATGCCTACTAG AGAGTGCGTGAGCTGTGAGCACATCCGCAGCCCGGGAGGCACCACCACTAGAGGAATGCGCCTATTCCTTGTAAATTAATATTGAAATACATTCATCCGTTATATAGAC                                                            ]
[+] EMBL CNS08SJ0             [                        TGTTCGTGATTCGACGAGCCAGTCATCCCAGCAAAAGCTAGCAAAAGATGTCTCTTGGACCGTTCTTCCGCTCACCGTTCACCGACCTGACCGCGTCGATGGTCAACTTCCAGCAGTACGACAAGTGCGGCGAGCTGGAGATGGCTTCGATCGACTGCCTCGAAGCGTACGGTACCGTGCGCGGTGCGAAGAAGTGTGCCGATCTGCTGGCCGACTTCCAGGAGTGCGCGTTCATGACGAAACAGATCGCTAGATTCCGGGCAATGCGAATGGAAAGACATCGTCAGGGATGGAACGGTGAGCGCAAGGGCGATGGATATTACGCACCACCGCCGCGTGTCGATGCCTACTAG AGAGTGCGTTA CTGTGAGCACATCCGCAGCACGGGAGGCACCACCACTAGAGGAATCCGTCTATTCCTTGTAAATTAATATTGAAATACATTCATCCGTTATATAGACAATTTCGGGAATTGTTTCCAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGAGCTGTGGT]
[+] EMBL BM592923             [                         ccgCGTGATTCGACGAGCCAGTCATCCCAGCAAAAGCTAGCAAAAGATGTCTCTTGGACCGTTCTTCCGCTCACCGTTCACCGACCTGACCGCGTCGATGGTCAACTTCCAGCAGTACGACAAGTGCGGCGAGCTGGAGATGGCTTCGATCGACTGCCTCGAAGCGTACGGTACCGTGCGCGGTGCGAAGAAGTGTGCCGATCTGCTGGCCGACTTCCAGGAGTGCGCGTTCATGACGAAACAGATCGCTAGATTCCGGGCAATGCGAATGGAAAGACATCGTCAGGGATGGAACGGTGAGCGCAAGGGCGATGGATATTACGCACCACCGCCGCGTGTCGATGCCTACTAGAAGAGTGCGTTAGCTGTGAGCACATCCGCAGCCCGGGAGGCACCACCACTAGAGGAATCCGCCTATTCCTTGTAAATTAATATTGAAATACATTCATCCGTTATATAGAC                                                            ]
[+] EMBL BM623416             [                                      ccgGCCAGTCATCCCAGCAAAAGCTAGCAAAAGATGTCTCTTGGACCGTTCTTCCGCTCACCGTTCACCGACCTGACCGCGTCGATGGTCAACTTCCAGCAGTACGACAAGTGCGGCGAGCTGGAGATGGCTTCGATCGACTGCCTCGAAGCGTACGGTACCGTGCGCGGTGCGAAGAAGTGTGCCGATCTGCTGGCCGACTTCCAGGAGTGCGCGTTCATGACGAAACAGATCGCTAGATTCCGGGCAATGCGAATGGAAAGACATCGTCAGGGATGGAACGGTGAGCGCAAGGGCGATGGATATTACGCACCACCGCCGCGTGTCGATGCCTACTAG AGAGTGCGTTAGCTGTGAGCACATCCGCAGCACGGGAGGCACCACCACTAGAGGAATCCGTCTATTCCTTGTAAATTAATATTGAAATACATTCATCCGTTATATAGAC                                                            ]




>consensus_8205#0
CCGCCCACGCGTCCGACCTGTTCGTGATTCGACGAGCCAGTCATCCCAGCAAAAGCTAGC
AAAAGATGTCTCTTGGACCGTTCTTCCGCTCACCGTTCACCGACCTGACCGCGTCGATGG
TCAACTTCCAGCAGTACGACAAGTGCGGCGAGCTGGAGATGGCTTCGATCGACTGCCTCG
AAGCGTACGGTACCGTGCGCGGTGCGAAGAAGTGTGCCGATCTGCTGGCCGACTTCCAGG
AGTGCGCGTTCATGACGAAACAGATCGCTAGATTCCGGGCAATGCGAATGGAAAGACATC
GTCAGGGATGGAACGGTGAGCGCAAGGGCGATGGATATTACGCACCACCGCCGCGTGTCG
ATGCCTACTAGAGAGTGCGTTAGCTGTGAGCACATCCGCAGCCCGGGAGGCACCACCACT
AGAGGAATCCGCCTATTCCTTGTAAATTAATATTGAAATACATTCATCCGTTATATAGAC
AAGACCGGGAATTGTTTCCAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGAGCTGTGGT

consensusID : consensus_8205#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 505
fasta sequence

                              [GAGGACTGTTGGCCTACTGGAAGGAAAAAAAACATCCCTGTTCGT-GATTCGACGAGCCAGTCATCCCAGCAAAAGCTAGCAAAAGATGTCTCTTGGACCGTTCTTCCGCTCACCGTTCACCGACCTGACCGCGTCGATGGTCAACTTCCAGCAGTACGACAAGTGCGGCGAGCTGGAGATGGCTTCGATCGACTGCCTCGAAGCGTACGGTACCGTGCGCGGTGCGAAGAAGTGTGCCGATCTGCTGGCCGACTTCCAGGAGTGCGCGTTCATGACGAAACAGATCGCTAGATTCCGGGCAATGCGAATGGAAAGACATCGTCAGGGATGGAACGGTGAGCGCAAGGGTGATGGATATTACGCACCACCGCCGCGTGTCGATGCCTACTAGAGAGTGCGTTAGCTGTGAGCACATCCGCAGCCCGGGAGGCACCACCACTAGAGGAATCCGCCTATTCCTTGTAAATTAATATTGAAATACATTCATCCGTTATATAGACAAGCT]

[-] EMBL CNS08SJ1             [GAGGACTGTTGGCCTACTGGAAGGAAAAAAAACATCCCTGTTCGT GATTCGACGAGCCAGTCATCCCAGCAAAAGCTAGCAAAAGATGTTTCTTGGACCGTTTTTCCGCTCACCGTTCACCGACCTGACCGCGTCGATGGTCAACTTCCAGCAGTACGACAAGTGCGGCGGGCTGGAGATGGCTTCGATCAACTGCCTCGAAGCGTACGGTACCGTGCGCGGTGCGAAGAAGTGTGCCGGTCTGCTGGCCGACTTCCAGGAGTGCGCGTTCATGACGAAACAGATCGCTAGATTCCGGGCAATGCGAATGGAAAGACATCGTCAGGGATGGAACGGTGAGCGCAAGGGCGATGGGTTTTACGCACCACCGCCGCGTGTCGATGCCTACTAGAGAGTGCGTTAGCTGTGAGAACATCCGCAGCACGGGAGGCACCACCACTAGAGGAATCCGTCTATTCCTTGTAAATTAATATTGAAATACATTCATCCGTTATATAGACA    ]
[+] EMBL BM597738             [                    ccGGAAAAAAAACATCCCTGTTCGT GATTCGACGAGCCAGTCATCCCAGCAAAAGCTAGCAAAAGATGTCTCTTGGACCGTTCTTCCGCTCACCGTTCACCGACCTGACCGCGTCGATGGTCAACTTCCAGCAGTACGACAAGTGCGGCGAGCTGGAGATGGCTTCGATCGACTGCCTCGAAGCGTACGGTACCGTGCGCGGTGCGAAGAAGTGTGCCGATCTGCTGGCCGACTTCCAGGAGTGCGCGTTCATGACGAAACAGATCGCTAGATTCCGGGCAATGCGAATGGAAAGACATCGTCAGGGATGGAACGGTGAGCGCAAGGGTGATGGATATTACGCACCACCGCCGCGTGTCGATGCCTACTAGAGAGTGCGTTAGCTGTGAGCACATCCGCAGCCCGGGAGGCACCACCACTAGAGGAATCCGCCTATTCCTTGTAAATTAATATTGAAATACATTCATCCGTTATATAGACCAGCT]
[+] EMBL BM642091             [                                 ccgcggacgCGTGGGTTCGACG    AGTCATCCCAGCAAAAGCTAGCAAAAGATGTCTCTTGGACCGTTCTTCCGCTCACCGTTCACCGACCTGACCGCGTCGATGGTCAACTTCCAGCAGTACGACAAGTGCGGCGAGCTGGAGATGGCTTCGATCGACTGCCTCGAAGCGTACGGTACCGTGCGCGGTGCGAAGAAGTGTGCCGATCTGCTGGCCGACTTCCAGGAGTGCGCGTTCATGACGAAACAGATCGCTAGATTCCGGGCAATGCGAATGGAAAGACATCGTCAGGGATGGAACGGTGAGCGCAAGGGTGATGGATATTACGCACCACCGCCGCGTGTCGATGCCTACTAGAGAGTGCGTTAGCTGTGAGCACATCCGCAGCCCGGGAGGCACCACCACTAGAGGAATCCGCCTATTCCTTGTAAATTAATATTGAAATACATTCATCCGTTATATAGAC     ]




>consensus_8205#1
GAGGACTGTTGGCCTACTGGAAGGAAAAAAAACATCCCTGTTCGTGATTCGACGAGCCAG
TCATCCCAGCAAAAGCTAGCAAAAGATGTCTCTTGGACCGTTCTTCCGCTCACCGTTCAC
CGACCTGACCGCGTCGATGGTCAACTTCCAGCAGTACGACAAGTGCGGCGAGCTGGAGAT
GGCTTCGATCGACTGCCTCGAAGCGTACGGTACCGTGCGCGGTGCGAAGAAGTGTGCCGA
TCTGCTGGCCGACTTCCAGGAGTGCGCGTTCATGACGAAACAGATCGCTAGATTCCGGGC
AATGCGAATGGAAAGACATCGTCAGGGATGGAACGGTGAGCGCAAGGGTGATGGATATTA
CGCACCACCGCCGCGTGTCGATGCCTACTAGAGAGTGCGTTAGCTGTGAGCACATCCGCA
GCCCGGGAGGCACCACCACTAGAGGAATCCGCCTATTCCTTGTAAATTAATATTGAAATA
CATTCATCCGTTATATAGACAAGCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8205#0      --------------------CCGCCCACGCGTCCGACCTGTTCGTGATTCGACGAGCCAG 40
consensus_8205#1      GAGGACTGTTGGCCTACTGGAAGGAAAAAAAACATCCCTGTTCGTGATTCGACGAGCCAG 60
                                            *   *     *   ************************

consensus_8205#0      TCATCCCAGCAAAAGCTAGCAAAAGATGTCTCTTGGACCGTTCTTCCGCTCACCGTTCAC 100
consensus_8205#1      TCATCCCAGCAAAAGCTAGCAAAAGATGTCTCTTGGACCGTTCTTCCGCTCACCGTTCAC 120
                      ************************************************************

consensus_8205#0      CGACCTGACCGCGTCGATGGTCAACTTCCAGCAGTACGACAAGTGCGGCGAGCTGGAGAT 160
consensus_8205#1      CGACCTGACCGCGTCGATGGTCAACTTCCAGCAGTACGACAAGTGCGGCGAGCTGGAGAT 180
                      ************************************************************

consensus_8205#0      GGCTTCGATCGACTGCCTCGAAGCGTACGGTACCGTGCGCGGTGCGAAGAAGTGTGCCGA 220
consensus_8205#1      GGCTTCGATCGACTGCCTCGAAGCGTACGGTACCGTGCGCGGTGCGAAGAAGTGTGCCGA 240
                      ************************************************************

consensus_8205#0      TCTGCTGGCCGACTTCCAGGAGTGCGCGTTCATGACGAAACAGATCGCTAGATTCCGGGC 280
consensus_8205#1      TCTGCTGGCCGACTTCCAGGAGTGCGCGTTCATGACGAAACAGATCGCTAGATTCCGGGC 300
                      ************************************************************

consensus_8205#0      AATGCGAATGGAAAGACATCGTCAGGGATGGAACGGTGAGCGCAAGGGCGATGGATATTA 340
consensus_8205#1      AATGCGAATGGAAAGACATCGTCAGGGATGGAACGGTGAGCGCAAGGGTGATGGATATTA 360
                      ************************************************ ***********

consensus_8205#0      CGCACCACCGCCGCGTGTCGATGCCTACTAGAGAGTGCGTTAGCTGTGAGCACATCCGCA 400
consensus_8205#1      CGCACCACCGCCGCGTGTCGATGCCTACTAGAGAGTGCGTTAGCTGTGAGCACATCCGCA 420
                      ************************************************************

consensus_8205#0      GCCCGGGAGGCACCACCACTAGAGGAATCCGCCTATTCCTTGTAAATTAATATTGAAATA 460
consensus_8205#1      GCCCGGGAGGCACCACCACTAGAGGAATCCGCCTATTCCTTGTAAATTAATATTGAAATA 480
                      ************************************************************

consensus_8205#0      CATTCATCCGTTATATAGACAAGACCGGGAATTGTTTCCAAAAAAAAAAAAAAAAAGGCC 520
consensus_8205#1      CATTCATCCGTTATATAGACAAGCT----------------------------------- 505
                      ***********************                                     

consensus_8205#0      ACATGTGCCCGAGCTGTGGT 540
consensus_8205#1      --------------------