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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8210#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1446 fasta sequence
[AACAAATTATCACTAATCAAACTTTGATTGAACTTCAGGACAAAAAAAGCAAACAGTATTCCGAAAGCTTACCATGAAATTTGGCGAAACGTGAAGGGCCCAACAGGGGAGACAGCATAGAAACAACATCAACAAGGGCCTATTGAAGATAGCAGTTTTTAAGTGGCTTTGATTTGTGAAACACAGGAAAGAGGGAGAGAAATATGAAGGGGGAATAAGAGCAGAGCAGAGGGGATATAAAACAAACATTAATTCATTCCCAATTATAGCAGAGAAAGAGAGG------GAGAGAGAGAGAACTAATGAACTGAAGCAGAACAATAACATCGAAATGATACATCTCATAATTCCATCACAAAATGGGACTGCTACCACAAACTACTTCTGCTTGTTAACAGCGAGGAGAAAAAATAATGTACAAATCGGGTGCATGATGTGTG--TGTGTGTGAGTGCGGGATAAGGCACAAACAAATCAGCGTGTCGTGGTGTGC--GTGTGTGTGTG--TATGTGTGTGCTTGCGTGTGTGTCCTCGGAGTGAGCGATTTTCTTACTCTAAATCTACTCCTATTGGTGTTAAGTAGCAAATGGAATCGGCGAGTTTTTACAGAAAATACCATCCAATCGAGAATAATATTGTCGTATTATAAATCAGGAGGAGAACAAGAAGAACCCTTTGTCTTTGCCCTATGGCGATGGAGCGGGGAAGACTACTAATGCGTTTGCGCGTGCGCGTGTGTGCGCAAATGCATCTGAAATGGCGCACACATCTTAACGGTGTTACGCAAAGTTAGGAAAAAATCGTTTTTAATGTTTTATCACCCACAACAGAGACGCGCACGCCAACCAAAGGAGTGCAACAATCAATCAATATCTAACGAGTGAGTAAAACGGAACCAAGAGCAGGGAAAAGTGGTAAAACAAATAGCAATGGTGTGGCGTTTAAAACGTGACGGAGGAGAGAAGAAGCACAATAGAAGGGCGGTAAGAGAAAAGCAACTCAAATTGTGTTTTTGTGGAAGGGGGAAAGTTTTAACACACACGTTGTTTTACTACAGCGAACAAAATCAACCACAACAATGAAAATCAATCAGTACATGAAAATCAAGCAACAGAAAAATGAACACAAGAATCAAGCACCAACAGCAAAACAAAACATGTGAAAACGATCAAACATGTCTTCCCCTAATCTTTGGTGTGCAGGGCGAACGACGATAAATGTGAGAACGACACGGTACCTGAAATTTGTAAACGCTAACGTAGGAATAGGTTTAGACACGATTTTAACTCACAAAGAGAGATAGTACGAGAGAGAAAAAAATGGAACAACAACAACAACCACAACCAGAAGAAAAACAACCCGACATCAAATTAAAAAAAATGGGCAAAAAACAAAACAAAAAAAAAACATACAAAAGAATAACAGCAATTGCCTGAAAAAGAGAAAAGGAAGT]
[+] EMBL BX615275 [AACAAATTATCACTAATCAAACTTTGATTGAACTTCAGGACAAAAAAAGCAAACAGTATTCCGAAAGCTTACCATGAAATTTGGCGAAACGTGAAGGGCCCAACAGGGGAGACAGCATAGAAACAACATCAACAAGGGCCTATTGAAGATAGCAGTTTTTAAGTGGCTTTGATTTGTGAAACACAGGAAAGAGGGAGAGAAATATGAAGGGGGAATAAGAGCAGAGCAGAGGGGATATAAAACAAACATTAATTCATTCCCAATTATAGCAGAGAAAGAGAGGGAGAGAGAGAGAGAGAGAACTAATGAACTGAAGCAGAACAATAACATCGAAATGATACATCTCATAATTCCATCACAAAATGGGACTGCTACCACAAACTACTTCTGCTTGTTAACAGCGAGGAGAAAAAATAATGTACAAATCAGGTGCATGATGTGTG TGTGTGTGAGTGCGGGATAAGGCACAAACAAATCAGCGTGTCTTGGTGTGCGTGTGTGTGTGTG TATGTGTGTGCTTGCGTGTGTGTCCTCGGAGTGAGCGATTTTCTTACTCTAAATCT ]
[+] EMBL BM586122 [ ccgCAGGAGAGAGGGAGAGAAATATGAAGTGGGAATAAGATCAGAGCAGGGTGGATATAAAACAAACATTAATTCATTCCCAAGTATAGCAGAGAAAGAGAGG GAGAGAGAGAGAACTAATGAACTGAAGCAGAACAATAACATCGAAATGATACATCTCATAATTCCATCACAAAATGGGACTGCTACCACAAACTACTTCTGCTTGTTAACAGCGAGGAGAAAAAATAATGTACAAATCGGGTGCATGATGTGTGTTTGTGTGTGAGTGCGGGATAAGGCACAAACAAATCAGCGTGTCGTGGTGTGC GTGCGTGTGTG TATGTGTGTGCTTGCGTGTGTGTCCTCGGAGTGAGCGATTTTCTTACTCTAAATCTACTCCTATTGGTGTTAAGTAGCAAATGGAATCGGCGAGTTTTTACAGAAAATACCATCCAATCGAGAATAATATTGTCGTATTATAAATCAGGAGGAGAACAAGAAGAACCCTTTGTCTTTGCCCTATGGCGATGGAGCGGGGAAGACTACTAATGCGTTTGCGCGTGCGCGTGTGTGCGCAAATGCATCTGAAATGGCGC ]
[+] EMBL BM605054 [ ccgGATACATCTCATAATTCCATCACAAAATGGGACTGCTACCACAAACTACTTCTGCTTGTTAACAGCGAGGAGAAAAAATAATGTACAAATCGGGTGCATGATGTGTGTTTGTGTGTGAGTGCGGGATAAGGCACAAACAAATCAGCGTGTCGTGGTGTGC GTGCGTGTGTG TATGTGTGTGCTTGCGTGTGTGTCCTCGGAGTGAGCGATTTTCTTACTCTAAATCTACTCCTATTGGTGTTAAGTAGCAAATGGAATCGGCGAGTTTTTACAGAAAATACCATCCAATCGAGAATAATATTGTCGTATTATAAATCAGGAGGAGAACAAGAAGAACCCTTTGTCTTTGCCCTATGGCGATGGAGCGGGGAAGACTACTAATGCGTTTGCGCGTGCGCGTGTGTGCGCAAATGCATCTGAAATGGCGCACACATCTTAACGGTGTTACGCAAAGTTAGGAAAAAATCGTTTTTAATGTTTTATCACCCACAACAGAGACGCGCACGCC ]
[+] EMBL CNS08O5Z [ TGTGTGTGAGTGCGGGATAAGGCACAAACAAATCAGCGTGTCGTGGTGTGC GTGTGTGTGTGTTTATGTGTGTGCTTGCGTGTGTGTCCTCGGAGTGAGCGATTTTCTTACTCTAAATCTACTCCTATTGGTGTTAAGTAGCAAATGGAATCGGCGAGTTTTTACAGAAAATACCATCCAATCGAGAATAATATTGTCGTATTATAAATCAGGAGGAAAACAAGAAGAACCCTTTGTCTTTGCCCTTTGGCGATGGAGCGGGGAAGACTACTAATGCGTTTGCGCGTGCGCGTGTGTGCGCAAATGCATCTGAAATGGCGCACACATCTTAACGGTGTTACGCAAAGTTAGGAAAAAATCGTTTTTAATGTTTTATCACCCACAACAGAGACGCGCACGCCAACCAAAGGAGTGCAACAATCAATCAATATCTAACGAGTGAGTAAAACGGAACCAAGAGCAGGGAAAAGTGGTAAAACAAATAGCAATGGTGTGGCGTTTAAAACGTGACGGAGGAGAGAAGAAGCACAATAGAAGGGCGGTAAGAGAAAAGCAACTCAAATTGTGTTTTTGTGGAAGGGGGAAAGTTTTAACACACACGTTGTTTTACTACAGCGAACAAAATCAACCACAACAATGAAAATCAATCAGTACATGAAAATCAAGCAACAGAAAAATGAACACAAGAATCAAGCACCAACAGCAAAACAAAACATGTGAAAACG ]
[-] EMBL CNS08O60 [ GGAGTGCAACAATCAATCAATATCTAACGAGTGAGTAAAACGGAACCAAGAGCAGGGAAAAGTGGTAAAACAAATAGCAATGGTGTGGCGTTTAAAACGTGACGGAGGAGAGAAGAAGCACAATAGAAGGGCGGTAAGAGAAAAGCAACTCAAATTGTGTTTTTGTGGAAGGGGGAAAGTTTTAAAACACACGTTGTTTTACTACAGCGGACAAAATCAACCACAACAATGAAAATCAATCAGTACATGAAAATCAAGCAACAGAAAAATGAACACAAGAATCAAGCACCAACAGCAAAACAAAACATGTGAAAACGATCAAACATGTCTTCCCCTAATCTTTGGTGTGCAGGGCGAACGACGATAAATGTGAGAACGACACGGTACCTGAAATTTGTAAACGCTAACGTAGGAATAGGTTTAGACACGATTTTAACTCACAAAGAGAGATAGTACGAGAGAGAAAAAAATGGAACAAC ]
[+] EMBL BX615574 [ GAGTAAAACGGAACCAAGAGCAGGGAAAAGTGGTAAAACAAATAGCAATGGTGTGGCGTTTAAAACGTGACGGAGGAGAGAAGAAGCACAATAGAAGGGCGGTAAGAGAA ]
[+] EMBL BM641527 [ ccgAAATAGCAATGGTGTGGCGTTTAAAACGTGACGGAGGAGAGAAGAAGCACAATAGAAGGGCGGTAAGAGAAAAGCAACTCAAATTGTGTTTTTGTGGAAGGGGGAAAGTTTTAACACACACGTTGTTTTACTACAGCGAACAAAATCAACCACAACAATGAAAATCAATCAGTACATGAAAATCAAGCAACAGAAAAATGAACACAAGAATCAAGCACCAACAGCAAAACAAAACATGTGAAAACGATCAAACATGTCTTCCCCTAATCTTTGGTGTGCAGGGCGAACGACGATAAATGTGAGAACGACACGGTACCTGAAATTTGTAAACGTTAACGTAGGAATAGGTTTAGACACGATTTTAACTCACAAAGAGAGATAGTACGAGAGAGAAAAAAATGGAACAACAACAACAACCACAACCAGAAGAAAAACAACCCGACATCAAATTAAAAAAAATGGGCAAAAAACAAAACAAAAAAAAAACATACAAAAGAATAACAGCAATTGCCTGAAAAAGAGAAAAGGAAGT]
consensusID : consensus_8210#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 569 fasta sequence
[AGAGAGAGAGAGAGAGAACTAATGAACTGAAGCAGAACAATAACATCGAAATGATACATCTCATAATTCCATCACAAAATGGGACTGCTACCACAAACTACTTCTGCTTGTTAACAGCGA-GGAGAAAAAATAATGTACAAATCAGGTGCATGATGTGTGTGTGTGTGAGTGCGGGATAAGGCACAAACAAATCAGCGTGTCGTGGTGTGCGTGTGTGTGTGTGTATGTGTGTGCTTGCGTGTGTGTCCTCGGAGTGAGCGATTTTCTTACTCTAAATCTACTCCTATTGGTGTTAAGTAGCAAATGGAATCGGCGAGTTTTTACAGAAAATACCATCCAATCGAGAATAATATTGTCGTATTATAAATCAGGAGGAAAACAAGAAGAACCCTAATCTTTGGTGTGCAGGGCGAACGACGATAAATGTGAGAACGACACGGTACCTGAAATTTGTAAACGTTAACGTAGGAATAGGTTTAGACACGATTTTAACTCACAAAGAGAGATAGTACGAGAGAGAAAAAAATGGAACAACAACAACAACCACAACCAGAAGAAAAACCACCCGA]
[+] EMBL BX620371 [AGAGAGAGAGAGAGAGAACTAATGAACTGAAGCAGAACAATAACATCGAAATGATACATCTCATAATTCCATCACAAAATGGGACTGCTACCACAAACTACTTCTGCTTGTTAACAGCGA GGAGAAAAAATAATGTACAAATCAGGTGCATGATGTGTGTGTGTGTGAGTGCGGGATAAGGCACAAACAAATCAGCGTGTCGTGGTGTGCGTGTGTGTGTGTGTATGTGTGTGCTTGCGTGTGTGTCCTCGGAGTGAGCGATTTTCTTACTCTAAATCTACTCCTATTGGTGTTAAGTAGCAAATGGAATCGGCGAGTTTTTACAGAAAATACCATCCAATCGAGAATAATATTGTCGTATTATAAATCAGGAGGAAAACAAGAAGAACCCTAATCTTTGGTGTGCAGGGCGAACGACGATAAATGTGAGAACGACACGGTACCTGAAATTTGTAAACGTTAACGTAGGAATAGGTTTAGACACGATTTTAACTCACAAAGAGAGATAGTACGAGAGAGAAAAAAATGGAACAACAACAACAACCACAACCAGAAGAAAAACCACCCGA]
[+] EMBL BX625276 [ ACCACAAACTACTTCTGCTTGTTAACAGCGAGGGAGAAAAAATAATGTACAAATCAGGTGCATGATGTGTGTGTGTGTGAGTGCGGGATAAGGCACAAACAAATCAGCGTGTCGTGGTGTGCGTGTGTGTGTGTGTATGTGTGTGCTTGCGTGTGTGTCCTCGGAGTGAGCNATTTTCTTAC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8210#0 AACAAATTATCACTAATCAAACTTTGATTGAACTTCAGGACAAAAAAAGCAAACAGTATT 60
consensus_8210#1 ------------------------------------------------------------
consensus_8210#0 CCGAAAGCTTACCATGAAATTTGGCGAAACGTGAAGGGCCCAACAGGGGAGACAGCATAG 120
consensus_8210#1 ------------------------------------------------------------
consensus_8210#0 AAACAACATCAACAAGGGCCTATTGAAGATAGCAGTTTTTAAGTGGCTTTGATTTGTGAA 180
consensus_8210#1 ------------------------------------------------------------
consensus_8210#0 ACACAGGAAAGAGGGAGAGAAATATGAAGGGGGAATAAGAGCAGAGCAGAGGGGATATAA 240
consensus_8210#1 ------------------------------------------------------------
consensus_8210#0 AACAAACATTAATTCATTCCCAATTATAGCAGAGAAAGAGAGGGAGAGAGAGAGAACTAA 300
consensus_8210#1 --------------------------------------AGAGAGAGAGAGAGAGAACTAA 22
**** *****************
consensus_8210#0 TGAACTGAAGCAGAACAATAACATCGAAATGATACATCTCATAATTCCATCACAAAATGG 360
consensus_8210#1 TGAACTGAAGCAGAACAATAACATCGAAATGATACATCTCATAATTCCATCACAAAATGG 82
************************************************************
consensus_8210#0 GACTGCTACCACAAACTACTTCTGCTTGTTAACAGCGAGGAGAAAAAATAATGTACAAAT 420
consensus_8210#1 GACTGCTACCACAAACTACTTCTGCTTGTTAACAGCGAGGAGAAAAAATAATGTACAAAT 142
************************************************************
consensus_8210#0 CGGGTGCATGATGTGTGTGTGTGTGAGTGCGGGATAAGGCACAAACAAATCAGCGTGTCG 480
consensus_8210#1 CAGGTGCATGATGTGTGTGTGTGTGAGTGCGGGATAAGGCACAAACAAATCAGCGTGTCG 202
* **********************************************************
consensus_8210#0 TGGTGTGCGTGTGTGTGTGT--ATGTGTGTGCTTGCGTGTGTGTCCTCGGAGTGAGCGAT 538
consensus_8210#1 TGGTGTGCGTGTGTGTGTGTGTATGTGTGTGCTTGCGTGTGTGTCCTCGGAGTGAGCGAT 262
******************** **************************************
consensus_8210#0 TTTCTTACTCTAAATCTACTCCTATTGGTGTTAAGTAGCAAATGGAATCGGCGAGTTTTT 598
consensus_8210#1 TTTCTTACTCTAAATCTACTCCTATTGGTGTTAAGTAGCAAATGGAATCGGCGAGTTTTT 322
************************************************************
consensus_8210#0 ACAGAAAATACCATCCAATCGAGAATAATATTGTCGTATTATAAATCAGGAGGAGAACAA 658
consensus_8210#1 ACAGAAAATACCATCCAATCGAGAATAATATTGTCGTATTATAAATCAGGAGGAAAACAA 382
****************************************************** *****
consensus_8210#0 GAAGAACCCTTTGTCTTTGCCCTATGGCGATGGAGCGGGGAAGACTACTAATGCGTTTGC 718
consensus_8210#1 GAAGAACCCTA-ATCTTTGGTGTGCAGGGCGAACGACGATAAATGTGAGAACGACACGGT 441
********** ****** * * * * * ** * ** * *
consensus_8210#0 GCGTGCG-CGTGTGTGCGCAAATGCATCTGAAATGGCGCACAC-ATCTTAACGGTGTTAC 776
consensus_8210#1 ACCTGAAATTTGTAAACGTTAACGTAGGAATAGGTTTAGACACGATTTTAAC--TCACAA 499
* ** *** ** ** * * * **** ** ***** * *
consensus_8210#0 GCAAAGTTAGGAAAAAATCGTTTTTAATGTTTTATCACCCACAACAGAGACGCGCACGCC 836
consensus_8210#1 AGAGAGATAGTACGAGAGAGAAAAAAATGGAACAACAACAACAACCACAACCAGAAGAAA 559
* ** *** * * * * **** * ** * ***** ** * *
consensus_8210#0 AACCAAAGGAGTGCAACAATCAATCAATATCTAACGAGTGAGTAAAACGGAACCAAGAGC 896
consensus_8210#1 AACCACCCGA-------------------------------------------------- 569
***** **
consensus_8210#0 AGGGAAAAGTGGTAAAACAAATAGCAATGGTGTGGCGTTTAAAACGTGACGGAGGAGAGA 956
consensus_8210#1 ------------------------------------------------------------
consensus_8210#0 AGAAGCACAATAGAAGGGCGGTAAGAGAAAAGCAACTCAAATTGTGTTTTTGTGGAAGGG 1016
consensus_8210#1 ------------------------------------------------------------
consensus_8210#0 GGAAAGTTTTAACACACACGTTGTTTTACTACAGCGAACAAAATCAACCACAACAATGAA 1076
consensus_8210#1 ------------------------------------------------------------
consensus_8210#0 AATCAATCAGTACATGAAAATCAAGCAACAGAAAAATGAACACAAGAATCAAGCACCAAC 1136
consensus_8210#1 ------------------------------------------------------------
consensus_8210#0 AGCAAAACAAAACATGTGAAAACGATCAAACATGTCTTCCCCTAATCTTTGGTGTGCAGG 1196
consensus_8210#1 ------------------------------------------------------------
consensus_8210#0 GCGAACGACGATAAATGTGAGAACGACACGGTACCTGAAATTTGTAAACGCTAACGTAGG 1256
consensus_8210#1 ------------------------------------------------------------
consensus_8210#0 AATAGGTTTAGACACGATTTTAACTCACAAAGAGAGATAGTACGAGAGAGAAAAAAATGG 1316
consensus_8210#1 ------------------------------------------------------------
consensus_8210#0 AACAACAACAACAACCACAACCAGAAGAAAAACAACCCGACATCAAATTAAAAAAAATGG 1376
consensus_8210#1 ------------------------------------------------------------
consensus_8210#0 GCAAAAAACAAAACAAAAAAAAAACATACAAAAGAATAACAGCAATTGCCTGAAAAAGAG 1436
consensus_8210#1 ------------------------------------------------------------
consensus_8210#0 AAAAGGAAGT 1446
consensus_8210#1 ----------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||