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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8216#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1208 fasta sequence
[CCGCGGACGCGTGGGCGGACGCGTGGGGGGAAAACATTTGCCGTGGCACACGAACAGCATTTTCTTTCCACA-GACACCTGTTAGAAAGTAGTGGGCGAAAGTACACTAAGAGCCAAGATACAAAAAAACAGTGAGTCCCAGATTGGAATACACAATCAACGGCCACGAGCAACCACAGCAGTGCGCTGAAAACCTTTTATGGCAATTAAGTTCAACGCTCGGAAAAGTTCCTTCTGAAGCAGTCAGGATATTCCTGTAAACATACGACCATGTCACACGTTGTAATTGGTGGCGGCACCGGCTTCATCGGCCGCCGGCTGGTAAAGACGCTGCTCGCTGAAGGTCACGAGGTGACGACGATTTCGCGCATGCCGGGCCCGAAGCACATCA-GCTGGCACGAGCTGGAGAAGGAGGGCCTGCCGAGCGGTACGACGGCCGTCGTGAACCTGGCCGGCCAGAATGTGCTCGATCCC-ACCCGCCGGTGGACGCCCGGCTTCAA-GCA-GAACGTGTGGAACTCGCGCATCAACACGACGGCGGCCTGCGCGCGGGCGATCGAGCGCGCCACGGTCAAGCCGGCCGTGTTCGTCAACATCTCCGGCGTCAGCCACTACGCGCCGGGCAGCCAGAAGCACACCGAGCTGTCCAAGGTGTCCGACTACGACTTCATGTCCCGGCTGTGCATCGAGTGGGAGCGGGCCGCCACGCTGTCGGACAACTCGATCTGCCGCGTGGTGCGCGTACGAAGCGGCGTCGTGCTTGGACGGGAGGGCGGCATGATCCAGTCGCTGATACTGCCGTTCT-GGTTCGGGCTCGGC-GGCCCGGTCGGCGACGGCAAGCACGATCTGCCCTGGATACACGCGGACGACCTGTGCGGGCTGATACGGTTCGCGATCGA-------GAGGTAAGCGGGGTGCTGAACGGGGTCGCCCCGGAGCTGGCCACCAACGCGGACTTTACCAAAGCGTTCGCGGCCGCCCTGGTCCGGCCCGCCTTCTTTCCCATGCCGCTGTTCGCGNTGAATCTCGTGTTCGCCGCGGAGCGGGCGGTGCTGCTGACGAACGGCGCGAAGGTGGTACCGCAGCGTGTGCTGGAGTACGGGTTCCAGTATCGGTATCCGGACCTGCAGTCCGCCTGCAAGGAGGTGGCACACTTGTTNTAAGCCCAAGCACGATCTCGCCCGCGCAACCCAAACGCAGCTCTAAACGCAGTCT]
[+] EMBL BM608616 [CCGCGGACGCGTGGGCGGACGCGTGGGGGGAAAACATTTGCCGTGGCACACGAACAGCATTTTCTTTCCACATGACACCTGTTAGAAAGTAGTGGGCGAAAGTACACTAAGAGCCAAGATACAAAAAAACAGTGAGTCCCAGATTGGAATACACAATCAACGGCCACGAGCAACCACAGCAGTGCGCTGAAAACCTTTTATGGCAATTAAGTTCAACGCTCGGAAAAGTTCCTTCTGAAGCAGTCAGGATATTCCTGTAAACATACGACCATGTCACACGTTGTAATTGGTGGCGGCACCGGCTTCATCGGCCGCCGGCTGGTAAAGACGCTGCTCGCTGAAGGTCACGAGGTGACGACGATTTCGCGCATGCCGGGCCCGAAGCACATCA GCTGGCACGAGCTGGAGAAGGAGGGCCTGCCGAGCGGTACGACGGCCGTCGTGAACCTGGCCGGCCAGAATGTGCTCGATCCC ACCCGCCGGTGGACGCCCGGCTTCAA GCA GAACGTGTGGAACTCGCGCATCAACACGACGGCGGCCTGCGCGCGGGCGATCGAGCGCGCCACGGTCAAGCCGGCCGTGTTCGTCAACATCTCCGGCGTCAGCCACTACGCGCCGGGCAGCCAGAAGCACACCGAGC ]
[+] EMBL BX468925 [ ggcagaatCGG CACGT GGAGGAAAACATTTGCCGTGGCACACGAACAGCATTTTCTTTCCACA GACACCTGTTAGAAAGTAGTGGGCGAAAGTACACTAAGAGCCAAGATACAAAAAAACAGTGAGTCCCAGATTGGAATACACAATCAACGGCCACGAGCAACCACAGCAGTGCGCTGAAAACCTTTTATGGCAATTAAGTTCAACGCTCGGAAAAGTTCCTTCTGAAGCAGTCAGGATATTCCTGTAAACATACGACCATGTCACACGTTGTAATTGGTGGCGGCACCGGCTTCATCGGCCGCCGGCTGGTAAAGACGCTGCTCGCTGAAGGTCACGAGGTGACGACGATTTCGCGCATGCCGGGCCCGAAGCACATCAGGCTGGCACGAGCTGGAGAAGGAGGGCCTGCCGAGCGGTACGACGGCCGTCGTGAACCTGGCCGGCCAGAATGTGCTCGATCCCGACCCGACGGTGGACGCCCGGCTTCAAGGCAGGAACGT ]
[+] EMBL BX606272 [ GAACAGCATTTTCTTTCCACA GACACCTGTTAGAAAGTAGTGGGCGAAAGTACACTAAGAGCCAAGATACAAAAAAACAGTGAGTCCCAGATTGGAATACACAATCAACGGCCACGAGCAACCACAGCAGTGCGCTGAAAACCTTTTATGGCAATTAAGTTCAACGCTCGGAAAAGTTCCTTCTGAAGCAGTCAGGATATTCCTGTAAACATACGACCATGTCACACGTTGTAATTGGTGGCGGCACCGGCTTCATCGGCCGCCGGCTGGTAAAGACGCTGCTCGCTGAAGGTCACGAGGTGACGACGATTTCGCGCATGCCGGGCCCGAAGCACATCA GCTGGCACGAGCTGGAGAAGGAGGGCCTGCCGAGCGGTACGACGGCCGTCGTGAACCTGGCCGGCCAGAATGTGCTCGATCCC ACCCGCCGGTGGACGCCCGGCTTCAA GCA GAACGTGTGGAACTCGCGCATCAACACGACGGCGGCCTGCGCGCGGGCGATCGAGCGCGCCACGGTCAAGCCGGCCGTGTTCGTCAACATCTCCGGCGTCAGCCACTACGCGCCGGGCAGCCAGAAGCACACCGAGCTGTCCAAGGTGTCCGACTACGACTTCATGTCCCGGCTGTGCATCGAGTGGGAGCGGGCCGCCACGCTGTCGGACAACTCGATCTGCCGCGTGGTGCGCGTACGAAGCGGCGTCGTGCTTGGACGGGAGGGCGGCATG ]
[+] EMBL BX614853 [ CACA GACACCTGTTAGAAAGTAGTGGGCGAAAGTACACTAAGAGCCAAGATACAAAAAAACAGTGAGTCCCAGATTGGAATACACAATCAACGGCCACGAGCAACCACAGCAGTGCGCTGAAAACCTTTTATGGCAATTAAGTTCAACGCTCGGAAAAGTTCCTTCTGAAGCAGTCAGGATATTCCTGTAAACATACGACCATGTCACACGTTGTAATTGGTGGCGGCACCGGCTTCATCGGCCGCCGGCTGGTAAAGACGCTGCTCGCTGAAGGTCACGAGGTGACGACGATTTCGCGCATGCCGGGCCCGAAGCACATCA GCTGGCACGAGCTGGAGAAGGAGGGCCTGCCGAGCGGTACGACGGCCGTCGTGAACCTGGCCGGCCAGAATGTGCTCGATCCC ACCCGCCGGTGGACGCCCGGCTTCAA GCA GAACGTGTGGAACTCGCGCATCAACACGACGGCGGCCTGCGCGCGGGCGATCGAGCGCGCCACGGTCAAGCCGGCCGTGTTCGTCAACATCTCCGGCGTCAGCCACTACGCGCCGGGCAGCCAGAAGCACACCGAGCTGTCCAAGGTGTCCGACTACGACTTCATGTCCCGGCTGTGCATCGAGTGGGAGCGGGCCGCCACGCTGTCGGACAACTCGATCTGCCGCGTGGTGCGCGTACGAAGCGGCGTCGTGCTTGGACGGGAGG ]
[+] EMBL BX621119 [ ACACTAAGAGCCAAGATACAAAAAAACAGTGAGTCCCAGATTGGAATACACAATCAACGGCCACGAGCAACCACAGCAGTGCGCTGAAAACCTTTTATGGCAATTAAGTTCAACGCTCGGAAAAGTTCCTTCTGAAGCAGTCAGGATATTCCTGTAAACATACGACCATGTCACACGTTGTAATTGGTGGCGGCACCGGCTTCATCGGCCGCCGGCTGGTAAAGACGCTGCTCGCTGAAGGTCACGAGGTGACGACGATTTCGCGCATGCCGGGCCCGAAGCACATCA GCTGGCACGAGCTGGAGAAGGAGGGCCTGCCGAGCGGTACGACGGCCGTCGTGAACCTGGCCGGCCAGAATGTGCTCGATCCC ACCCGCCGGTGGACGCCCGGCTTCAA GCA GAACGTGTGGAACTCGCGCATCAACACGACGGCGGCCTGCGCGCGGGCGATCGAGCGCGCCACGGTCAAGCCGGCCGTGTTCGTCAACATCTCCGGCGTCAGCCACTACGCGCCGGGCAGCCAGAAGCACACCGAGCTGTCCAAGGTGTCCGACTACGACTTCATGTCCCGGCTGTGCATCGAGTGGGAGCGGGCCGCCACGCTGTCGGACAACTCGATCTGCCGCGTGGTGCGCGTACGAAGCGGCGTCGTGCTTGGACGGGAGGGCGGCATGATCCAGTCGCTGATACTGCCGTTCTGGGTTCGGGCTCGGCGGGCCCGGTCGGCGACGGCAAGCACGATCTGCCCTGGATACACGCGGACGACCTGTGCGGGCTG ]
[-] EMBL AGA283541 [ GCTCGATCCC ACCCGCCGGTGGACGCCCGGCTTCAA GCA GAACGTGTGAAACTCGCGCATCAACACGACGGCGGCCTGCGCGCGGGCGATCGAGCGCGCCACGGTCAAGCCGGCCGTGTTCGTCAACATCTCCGGCGTCAGCCACTACGCGCCGGGCAGCCAGAAGCACACCGAGCTGTCCAAGGTGTCCGACTACGACTTCATGTCCCGGCTGTGCATCGAGTGGGAGCGGGCCGCCACGCTGTCGGACAACTCGATCTGCCGCGTGGTGCGCGTACGAAGCGGCGTCGTGCTTGGACGGGAGGGCGGCATGATCCAGTCGCTGATACTGCCGTTCT GGTTCGGGCTCGGC GGCCCGGTCGGCGACGGCAAGCACGATCTGCCCTGGATACACGCGGACGACCTGTGCGGGCTGATACGGTTCGCGATCGA GAGGTAAGCGGGGTGCTGAACGGGGTCGCCCCGGAGCTGGCCACCAACGCGGACTTTACC ]
[-] EMBL BX627676 [ TCGAGCGCGCCNCGGTCAAGCCGNCCGTGTTCGTCAACATCTCCGGCGTCAGCCACTACGCGCCGGGCAGCCAGAAGCACACCGAGCTGTCCAAGGTGTCCGACTACGACTTCATGTCCCGGCTGTGCATCGAGTGGGAGCGGGCCGCCACGCTGTCGGACAACTCGATCTGCCGCGNGGTGCGCGTACGAAGCGGCGTCGTGCTTGGACGGGAGGGCGGCATGATCCAGTCGCTGATACTGCCGTTCT GGTTCGGGCTCGGC GGCCCGGTCGGCGACGGCAAGCACGATCTGCCCTGGATACACGCGGACGACCTGTGCGGGCTGATACGGTTCGCGATCGAGCGGCCGGAGGTAAGCGGGGTGCTGAACGGGGTCGCCCCGGAGCTGGCCACCAACGCGGACTTTACCAAAGCGTTCGCGGCCGCCCTGGTCCGGCCCGCCTTCTTTCCCATGCCGCTGTTCGCGNTGAATCTCGTGTTCGCCGCGGAGCGGGCGGTGCTGCTGACGAACGGCGCGAAGGTGGTACCGCAGCGTGTGCTGGAGTACGGGTTCCAGTATCGGTATCCGGACCTGCAGTCCGCCTGCAAGGAGGTGGCACACTTGTTNTAAGCCCAAGCACGATCTCGCCCGCGCAACCCAAACGCAGCTCTAAACGCAGTCT]
consensusID : consensus_8216#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 733 fasta sequence
[GATCGCCCGAGGTNTTCCCGGCATTTGCGCTCGCAGTTGCAAACTCGTTATGTGACGGTGGGAAAACATTTGCCGTGGCACACGAACAGCATTTTCTTTCCACAGACACCTGTTAGAAAGTAGTGGGCGAAAGTACACTAAGAGCCAAGATACAAAAAAACAGTGAGTCCCAGATTGGAATACACAATCAACGGCCACGAGCAACCACAGCAGTGCGCTGAAAACCTTTTATGGCAATTAAGTTCAACGCTCGGAAAAGTTCCTTCTGAAGCAGTCAGGATATTCCTGTAAACATACGACCATGTCACACGTTGTAATTGGTGGCGGCACCGGCTTCATCGGCCGCCGGCTGGTAAAGACGCTGCTCGCTGAAGGTCACGAGGTGACGACGATTTCGCGCATGCCGGGCCCGAAGCACATCAGCTGGCACGAGCTGGAGAAGGAGGGCCTGCCGAGCGGTACGACGGCCGTCGTGAACCTGGCCGGCCAGAATGTGCTCGATCCCACCCGCCGGTGGACGCCCGGCTTCAAGCAGAACGTGTGGAACTCGCGCATCAACACGACGGCGGCCTGCGCGCGGGCGATCGAGCGCGCCACGGTCAAGCCGGCCGTGTTCGTCAACATCTCCGGCGTCAGCCACTACGCGCCGGGCAGCCAGAAGCACACCGAGCTGTCCAAGGTGTCCGACTACGACTTCATGTCCCCGGCTGTGCATCGAGTGGGACGGGCCGCA]
[+] EMBL AL932559 [GATCGCCCGAGGTNTTCCCGGCATTTGCGCTCGCAGTTGCAAACTCGTTATGTGACGGTGGGAAAACATTTGCCGTGGCACACGAACAGCATTTTCTTTCCACAGACACCTGTTAGAAAGTAGTGGGCGAAAGTACACTAAGAGCCAAGATACAAAAAAACAGTGAGTCCCAGATTGGAATACACAATCAACGGCCACGAGCAACCACAGCAGTGCGCTGAAAACCTTTTATGGCAATTAAGTTCAACGCTCGGAAAAGTTCCTTCTGAAGCAGTCAGGATATTCCTGTAAACATACGACCATGTCACACGTTGTAATTGGTGGCGGCACCGGCTTCATCGGCCGCCGGCTGGTAAAGACGCTGCTCGCTGAAGGTCACGAGGTGACGACGATTTCGCGCATGCCGGGCCCGAAGCACATCAGCTGGCACGAGCTGGAGAAGGAGGGCCTGCCGAGCGGTACGACGGCCGTCGTGAACCTGGCCGGCCAGAATGTGCTCGATCCCACCCGCCGGTGGACGCCCGGCTTCAAGCAGAACGTGTGGAACTCGCGCATCAACACGACGGCGGCCTGCGCGCGGGCGATCGAGCGCGCCACGGTCAAGCCGGCCGTGTTCGTCAACATCTCCGGCGTCAGCCACTACGCGCCGGGCAGCCAGAAGCACACCGAGCTGTCCAAGGTGTCCGACTACGACTTCATGTCCCCGGCTGTGCATCGAGTGGGACGGGCCGCA]
[+] EMBL AGA284831 [ GGAAAACATTTGCCGTGGCACACGAACAGCATTTTCTTTCCACAGACACCTGTTAGAAAGTAGTGGGCGAAAGTACACTAAGAGCCAAGATACAAAAAAACAGTGAGTCCCAGATTGGAATACACAATCAACGGCCACGAGCAACCACAGCAGTGCGCTGAAAACCTTTTATGGCAATTAAGTTCAACGCTCGGAAAAGTTCCTTCTGAAGCAGTCAGGATATTCCTGTAAACATACGACCATGTCACACGTTGTAATTGGTGGCGGCACCGGCTTCATCGGCCGCCGGCTGGTAAAGACGCTGCTCGCTGA AGGTGACGACGATTTCGCGCATGCCGGGCCCGAAGCACATCAGCTG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8216#0 ------------------------------CCGCGGACGCGTGGGCGG-ACGCG-TGGGG 28
consensus_8216#1 GATCGCCCGAGGTNTTCCCGGCATTTGCGCTCGCAGTTGCAAACTCGTTATGTGACGGTG 60
*** * ** ** * * * ** *
consensus_8216#0 GGAAAACATTTGCCGTGGCACACGAACAGCATTTTCTTTCCACAGACACCTGTTAGAAAG 88
consensus_8216#1 GGAAAACATTTGCCGTGGCACACGAACAGCATTTTCTTTCCACAGACACCTGTTAGAAAG 120
************************************************************
consensus_8216#0 TAGTGGGCGAAAGTACACTAAGAGCCAAGATACAAAAAAACAGTGAGTCCCAGATTGGAA 148
consensus_8216#1 TAGTGGGCGAAAGTACACTAAGAGCCAAGATACAAAAAAACAGTGAGTCCCAGATTGGAA 180
************************************************************
consensus_8216#0 TACACAATCAACGGCCACGAGCAACCACAGCAGTGCGCTGAAAACCTTTTATGGCAATTA 208
consensus_8216#1 TACACAATCAACGGCCACGAGCAACCACAGCAGTGCGCTGAAAACCTTTTATGGCAATTA 240
************************************************************
consensus_8216#0 AGTTCAACGCTCGGAAAAGTTCCTTCTGAAGCAGTCAGGATATTCCTGTAAACATACGAC 268
consensus_8216#1 AGTTCAACGCTCGGAAAAGTTCCTTCTGAAGCAGTCAGGATATTCCTGTAAACATACGAC 300
************************************************************
consensus_8216#0 CATGTCACACGTTGTAATTGGTGGCGGCACCGGCTTCATCGGCCGCCGGCTGGTAAAGAC 328
consensus_8216#1 CATGTCACACGTTGTAATTGGTGGCGGCACCGGCTTCATCGGCCGCCGGCTGGTAAAGAC 360
************************************************************
consensus_8216#0 GCTGCTCGCTGAAGGTCACGAGGTGACGACGATTTCGCGCATGCCGGGCCCGAAGCACAT 388
consensus_8216#1 GCTGCTCGCTGAAGGTCACGAGGTGACGACGATTTCGCGCATGCCGGGCCCGAAGCACAT 420
************************************************************
consensus_8216#0 CAGCTGGCACGAGCTGGAGAAGGAGGGCCTGCCGAGCGGTACGACGGCCGTCGTGAACCT 448
consensus_8216#1 CAGCTGGCACGAGCTGGAGAAGGAGGGCCTGCCGAGCGGTACGACGGCCGTCGTGAACCT 480
************************************************************
consensus_8216#0 GGCCGGCCAGAATGTGCTCGATCCCACCCGCCGGTGGACGCCCGGCTTCAAGCAGAACGT 508
consensus_8216#1 GGCCGGCCAGAATGTGCTCGATCCCACCCGCCGGTGGACGCCCGGCTTCAAGCAGAACGT 540
************************************************************
consensus_8216#0 GTGGAACTCGCGCATCAACACGACGGCGGCCTGCGCGCGGGCGATCGAGCGCGCCACGGT 568
consensus_8216#1 GTGGAACTCGCGCATCAACACGACGGCGGCCTGCGCGCGGGCGATCGAGCGCGCCACGGT 600
************************************************************
consensus_8216#0 CAAGCCGGCCGTGTTCGTCAACATCTCCGGCGTCAGCCACTACGCGCCGGGCAGCCAGAA 628
consensus_8216#1 CAAGCCGGCCGTGTTCGTCAACATCTCCGGCGTCAGCCACTACGCGCCGGGCAGCCAGAA 660
************************************************************
consensus_8216#0 GCACACCGAGCTGTCCAAGGTGTCCGACTACGACTTCATGTCCC-GGCTGTGCATCGAGT 687
consensus_8216#1 GCACACCGAGCTGTCCAAGGTGTCCGACTACGACTTCATGTCCCCGGCTGTGCATCGAGT 720
******************************************** ***************
consensus_8216#0 GGGAGCGGGCCGCCACGCTGTCGGACAACTCGATCTGCCGCGTGGTGCGCGTACGAAGCG 747
consensus_8216#1 GGGA-CGGGCCGCA---------------------------------------------- 733
**** ********
consensus_8216#0 GCGTCGTGCTTGGACGGGAGGGCGGCATGATCCAGTCGCTGATACTGCCGTTCTGGTTCG 807
consensus_8216#1 ------------------------------------------------------------
consensus_8216#0 GGCTCGGCGGCCCGGTCGGCGACGGCAAGCACGATCTGCCCTGGATACACGCGGACGACC 867
consensus_8216#1 ------------------------------------------------------------
consensus_8216#0 TGTGCGGGCTGATACGGTTCGCGATCGAGAGGTAAGCGGGGTGCTGAACGGGGTCGCCCC 927
consensus_8216#1 ------------------------------------------------------------
consensus_8216#0 GGAGCTGGCCACCAACGCGGACTTTACCAAAGCGTTCGCGGCCGCCCTGGTCCGGCCCGC 987
consensus_8216#1 ------------------------------------------------------------
consensus_8216#0 CTTCTTTCCCATGCCGCTGTTCGCGNTGAATCTCGTGTTCGCCGCGGAGCGGGCGGTGCT 1047
consensus_8216#1 ------------------------------------------------------------
consensus_8216#0 GCTGACGAACGGCGCGAAGGTGGTACCGCAGCGTGTGCTGGAGTACGGGTTCCAGTATCG 1107
consensus_8216#1 ------------------------------------------------------------
consensus_8216#0 GTATCCGGACCTGCAGTCCGCCTGCAAGGAGGTGGCACACTTGTTNTAAGCCCAAGCACG 1167
consensus_8216#1 ------------------------------------------------------------
consensus_8216#0 ATCTCGCCCGCGCAACCCAAACGCAGCTCTAAACGCAGTCT 1208
consensus_8216#1 -----------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||