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Anopheles gambiae
cluster # 8225 cluster # 8225       Sequences # 9       consensus # 5


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8225#0 length = 1249 sequences # 3  
consensus_8225#1 length = 948 sequences # 2  
consensus_8225#2 length = 915 sequences # 1  
consensus_8225#3 length = 710 sequences # 1  
consensus_8225#4 length = 614 sequences # 2  

consensusID : consensus_8225#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1249
fasta sequence
                              [AATCCCCGAGGTTAAAGCGGACGCGTGCTGTTGACGTCTCCCGTGTCGCTGCGTGCGCCTCTAACGTTGGCCAAAGAAGTGAAAGAGAAGCAAACCGTGTGTGTGTGTGTATGTGTGCGCGTACAGCGGATGTTGGCAGTGAGGAAGAAGAAGTGGAAGCTGCTTAATCACGTGTCCCGCGATCACAACATGACCCTGAAACCTGCCCATCTCTCGTACAAATGTACCGTCTGCACGG-CACGTTCGGCATGTACAAGCAGTTCGAAAGCCACGTCTACTCCGCGCACAGTACCGTCGCGAAAAAGACGGGCGAAGGGAAGGGCAGCAAGGGTGGCGGCGGCAGCGGCGGTGGTGGCATGGGACAGCAGCAGACCTCATCCGGCATGGGTAGCAGTGGTGGATCTTCATCTTCGGGCGGCGCTGGCGGACTGAGGAATCCGTTCGTGGGCGGTGGCGATTCGCTGCTGAAGCCGCTCAAGATTAACGACGAAATCACGATCATCCCGCAGCCGACCTCCAACAGCAAGATGGCGAAAACGATCGAGCTGGAAAGTCACGTCATAGGTGAGGGATGAACTAGGGCAATGCAGTTCAAAGAATCCGTATCACATTTTAACCGATTTCTCTTCTTTGTAGATTAAACATGACGATAAAAACATAAGGTGAGCCCCTTTTAAGCCACACACACACACACACACTACGACTGCCGAGGATTTTGGGACGTTAGAGGCCACGTGTAGATGATGAACCGATATCTGGTGGTCGACAGACAGAGTGACAAAGAGACAGAGGACATTCAGGGAGGGCAAATGAAACTCCTTCTAATCTTATCCTTTGATACTCCCCATTACCAATGGCCGCCTCTAATCTGTTTGTGGTTTCCAATGCATAATCCATTGCCATCGTCACCCCCCAGTCCCACACACGTACACACCACAAATAACGGGATTGTACGGGATTTGGGGTTGTGACGGTGGTGGTGTGGATGGAAACACTGGTGTGTAAGCATCGCACCTTCGGCGTTAATTGTGCAACTCCGGGGGATGCGAACCGGTATGAAAAAGCGGAATTTTACAGTCCATTATTTTCTTTCTACTACATACACAGTTTCATTTAGGTAATTTAAAAATAAAGTAATATTAAAGCAGCAGAAGCAGGATCAGAGTGTGCAGAAGAGAGAGTAGAGAGAGAGAGAGAGCAGAGAGAGGAATTAGGGCTAGAGGCGACTAAGCGCGCGTTGTAAAGAAAG]

[+] EMBL AL693777             [AATCCCCGAGGTTAAAGCGGACGCGTGCTGTTGACGTCTCCCGTGTCGCTGCGTGCGCCTCTAACGTTGGCCAAAGAAGTGAAAGAGAAGCAAACCGTGTGTGTGTGTGTATGTGTGCGCGTACAGCGGATGTTGGCAGTGAGGAAGAAGAAGTGGAAGCTGCTTAATCACGTGTCCCGCGATCACAACATGACCCTGAAACCTGCCCATCTCTCGTACAAATGTACCGTCTGCACGG CACGTTCGGCATGTACAAGCAGTTCGAAAGCCACGTCTACTCCGCGCACAGTACCGTCGCGAAAAAGACGGGCGAAGGGAAGGGCAGCAAGGGTGGCGGCGGCAGCGGCGGTGGTGGCATGGGACAGCAGCAGACCTCATCCGGCATGGGTAGCAGTGGTGGATCTTCATCTTCGGGCGGCGCTGGCGGACTGAGGAATCCGTTCGTGGGCGGTGGCGATTCGCTGCTGAAGCCGCTCAAGATTAACGACGAAATCACGATCATC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL BM611339             [                                                                                                                                                       ccgGGAAGCTGCTTAATCACGTGTCCCGCGATCACAACATGACCCTGAAACCTGCCCATCTCTCGTACAAATGTACCGTCTGCACGGCCACGTTCGGCATGTACAAGCAGTTCGAAAGCCACGTCTACTCCGCGCACAGTACGGTCGCGAAAAAGACGGGCGAAGGGAAGGGCAGCAAGGGTGGCGGCGGCAGCGGCGGTGGTGGCATGGGACAGCAGCAGACCTCATCCGGCATGGGTAGCAGTGGTGGATCTTCATCTTCGGGCGGCGCTGGCGGACTGAGGAATCCGTTCGTGGGCGGTGGCGATTCGCTGCTGAAGCCGCTCAAGATTAACGACGAAATCACGATCATCCCGCAGCCGACCTCCAACAGCAAGATGGCGAAAACGATCGAGCTGGAAAGTCACGTCATAGGTGAGGGATGAACTAGGGCAATGCAGTTCAAAGAATCCGTATCACATTTTAACCGATTTCTCTTCTTTGTAGATTAAACATGACGATAAAAACATAAGGTGAGCCCCTTTTAAGCCACACACACACACACACACTACGACTGCCGAGGATTTTGGGACGTTAGAGGCCACGTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL BX609210             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     AGCCACACACACACACACACACTACGACTGCCGAGGATTT  GGACGTTAGAGGCCACGTGTAGATGATGAACCGATATCTGGTGGTCGACAGACAGAGTGACAAAGAGACAGAGGACATTCAGGGAGGGCAAATGAAACTCCTTCTAATCTTATCCTTTGATACTCCCCATTACCAATGGCCGCCTCTAATCTGTTTGTGGTTTCCAATGCATAATCCATTGCCATCGTCACCCCCCAGTCCCACACACGTACACACCACAAATAACGGGATTGTACGGGATTTGGGGTTGTGACGGTGGTGGTGTGGATGGAAACACTGGTGTGTAAGCATCGCACCTTCGGCGTTAATTGTGCAACTCCGGGGGATGCGAACCGGTATGAAAAAGCGGAATTTTACAGTCCATTATTTTCTTTCTACTACATACACAGTTTCATTTAGGTAATTTAAAAATAAAGTAATATTAAAGCAGCAGAAGCAGGATCAGAGTGTGCAGAAGAGAGAGTAGAGAGAGAGAGAGAGCAGAGAGAGGAATTAGGGCTAGAGGCGACTAAGCGCGCGTTGTAAAGAAAG]


>consensus_8225#0 AATCCCCGAGGTTAAAGCGGACGCGTGCTGTTGACGTCTCCCGTGTCGCTGCGTGCGCCT CTAACGTTGGCCAAAGAAGTGAAAGAGAAGCAAACCGTGTGTGTGTGTGTATGTGTGCGC GTACAGCGGATGTTGGCAGTGAGGAAGAAGAAGTGGAAGCTGCTTAATCACGTGTCCCGC GATCACAACATGACCCTGAAACCTGCCCATCTCTCGTACAAATGTACCGTCTGCACGGCA CGTTCGGCATGTACAAGCAGTTCGAAAGCCACGTCTACTCCGCGCACAGTACCGTCGCGA AAAAGACGGGCGAAGGGAAGGGCAGCAAGGGTGGCGGCGGCAGCGGCGGTGGTGGCATGG GACAGCAGCAGACCTCATCCGGCATGGGTAGCAGTGGTGGATCTTCATCTTCGGGCGGCG CTGGCGGACTGAGGAATCCGTTCGTGGGCGGTGGCGATTCGCTGCTGAAGCCGCTCAAGA TTAACGACGAAATCACGATCATCCCGCAGCCGACCTCCAACAGCAAGATGGCGAAAACGA TCGAGCTGGAAAGTCACGTCATAGGTGAGGGATGAACTAGGGCAATGCAGTTCAAAGAAT CCGTATCACATTTTAACCGATTTCTCTTCTTTGTAGATTAAACATGACGATAAAAACATA AGGTGAGCCCCTTTTAAGCCACACACACACACACACACTACGACTGCCGAGGATTTTGGG ACGTTAGAGGCCACGTGTAGATGATGAACCGATATCTGGTGGTCGACAGACAGAGTGACA AAGAGACAGAGGACATTCAGGGAGGGCAAATGAAACTCCTTCTAATCTTATCCTTTGATA CTCCCCATTACCAATGGCCGCCTCTAATCTGTTTGTGGTTTCCAATGCATAATCCATTGC CATCGTCACCCCCCAGTCCCACACACGTACACACCACAAATAACGGGATTGTACGGGATT TGGGGTTGTGACGGTGGTGGTGTGGATGGAAACACTGGTGTGTAAGCATCGCACCTTCGG CGTTAATTGTGCAACTCCGGGGGATGCGAACCGGTATGAAAAAGCGGAATTTTACAGTCC ATTATTTTCTTTCTACTACATACACAGTTTCATTTAGGTAATTTAAAAATAAAGTAATAT TAAAGCAGCAGAAGCAGGATCAGAGTGTGCAGAAGAGAGAGTAGAGAGAGAGAGAGAGCA GAGAGAGGAATTAGGGCTAGAGGCGACTAAGCGCGCGTTGTAAAGAAAG



consensusID : consensus_8225#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 948
fasta sequence
                              [GCAGATCGGCCGGAGTTACTCCAACAGCAAGATGGCG-CAACGATCGAGCTGGAAAGTCACGTTATAGATTAAACATGACGATAAAAACATAAGGTGAGCCCCTTTTAAGC----CACACACACACACACTACGACTGCCGAGGATTTGGACGTTGGAGGCCACGTGTAGATGATGAACCGATATCTGGTGGTCGACAGACAGAGTGACAGAGAGAGAGACAGAGCGACATTCAGAGGAGGGCAAATGAAACTCCTTCTAATCTATATCCTTTGATACTCCCCATTACCAATGGCCG-CTCTAATCTGTATTGTGGTTTCCAATGCATAATCCATTGACATCGACACCCCCAGTCCCACACACGTACACACCACAGGGAATAACCGGGATNTAGTAACGGGATTCAGGCGNGGTAGTGACCGCGTAGGTGCGTGGTAGGACTGGAACACACTATGTGTTGTAAAGCCTACGCCACCTATACGTGCGTATCACATTTGTGCCAACTCCGNGGGCGTTGACGAAGGGTATAACAAAACANGCGGAATTATNACAGGTCCCATCTAATNTAACTAACTAACTACACTACCAGCACGGTTCCACTNCNCCGCGTACAATTTAGCAAGCANATAAAACGCTCACTATTCTAACAAGCCAAGNCGANCCACGCCACGCGACTCCAGGAAGAAGTGCNAGNACACGANCAGAAGNTNCGCAGACGGAGAGAANCCACGACGAAGCAACGGCAACTTANGGGGCCTAAGCAGGGCCGGACCTAAAGCGCCGGCCGGTTCGGNAACAGGCANACGGGGGGNNCGCACGGCAAAAGCAGGCAANAAACCGACAACACCTATGGNCACCACAAGNTCGCACAATACAACTCCATGNATANCAGTANTAAACCCCACCCACACACAANACANGAAACACGGGCTNTCTGGGGCGNACAGCTATCCC]

[+] EMBL AL692610             [GCAGATCGGCCGGAGTTACTCCAACAGCAAGATGGCG CAACGATCGAGCTGGAAAGTCACGTTATAGATTAAACATGACGATAAAAACATAAGGTGAGCCCCTTTTAAGC    CACACACACACACACTACGACTGCCGAGGATTTGGACGTTGGAGGCCACGTGTAGATGATGAACCGATATCTGGTGGTCGACAGACAGAGTGACAGAGAGAGAGACAGAGCGACATTCAGAGGAGGGCAAATGAAACTCCTTCTAATCTATATCCTTTGATACTCCCCATTACCAATGGCCG CTCTAATCTGTATTGTGGTTTCCAATGCATAATCCATTGACATCGACACCCCCAGTCCCACACACGTACACACCACAGGGAATAACCGGGATNTAGTAACGGGATTCAGGCGNGGTAGTGACCGCGTAGGTGCGTGGTAGGACTGGAACACACTATGTGTTGTAAAGCCTACGCCACCTATACGTGCGTATCACATTTGTGCCAACTCCGNGGGCGTTGACGAAGGGTATAACAAAACANGCGGAATTATNACAGGTCCCATCTAATNTAACTAACTAACTACACTACCAGCACGGTTCCACTNCNCCGCGTACAATTTAGCAAGCANATAAAACGCTCACTATTCTAACAAGCCAAGNCGANCCACGCCACGCGACTCCAGGAAGAAGTGCNAGNACACGANCAGAAGNTNCGCAGACGGAGAGAANCCACGACGAAGCAACGGCAACTTANGGGGCCTAAGCAGGGCCGGACCTAAAGCGCCGGCCGGTTCGGNAACAGGCANACGGGGGGNNCGCACGGCAAAAGCAGGCAANAAACCGACAACACCTATGGNCACCACAAGNTCGCACAATACAACTCCATGNATANCAGTANTAAACCCCACCCACACACAANACANGAAACACGGGCTNTCTGGGGCGNACAGCTATCCC]
[+] EMBL BM637535             [          cagccgacCTCCAACAGCAAGATGGCGAAAACGATCGAGCTGGAAAGTCACGTCATAGATTAAACATGACGATAAAAACATAAGGTGAGCCCCTTTTAAGCCACACACACACACACACACTACGACTGCCGAGGATTTGGACGTTAGAGGCCACGTGTAGATGATGAACCGATATCTGGTGGTCGACAGACAGAGTGACA   A AGAGACAGAG GACATTCAG GGAGGGCAAATGAAACTCCTTCTAATCT TATCCTTTGATACTCCCCATTACCAATGGCCGCCTCTAATCTGT TTGTGGTTTCCAATGCATAATCCATTGCCATCGTCACCCCCca                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]


>consensus_8225#1 GCAGATCGGCCGGAGTTACTCCAACAGCAAGATGGCGCAACGATCGAGCTGGAAAGTCAC GTTATAGATTAAACATGACGATAAAAACATAAGGTGAGCCCCTTTTAAGCCACACACACA CACACTACGACTGCCGAGGATTTGGACGTTGGAGGCCACGTGTAGATGATGAACCGATAT CTGGTGGTCGACAGACAGAGTGACAGAGAGAGAGACAGAGCGACATTCAGAGGAGGGCAA ATGAAACTCCTTCTAATCTATATCCTTTGATACTCCCCATTACCAATGGCCGCTCTAATC TGTATTGTGGTTTCCAATGCATAATCCATTGACATCGACACCCCCAGTCCCACACACGTA CACACCACAGGGAATAACCGGGATNTAGTAACGGGATTCAGGCGNGGTAGTGACCGCGTA GGTGCGTGGTAGGACTGGAACACACTATGTGTTGTAAAGCCTACGCCACCTATACGTGCG TATCACATTTGTGCCAACTCCGNGGGCGTTGACGAAGGGTATAACAAAACANGCGGAATT ATNACAGGTCCCATCTAATNTAACTAACTAACTACACTACCAGCACGGTTCCACTNCNCC GCGTACAATTTAGCAAGCANATAAAACGCTCACTATTCTAACAAGCCAAGNCGANCCACG CCACGCGACTCCAGGAAGAAGTGCNAGNACACGANCAGAAGNTNCGCAGACGGAGAGAAN CCACGACGAAGCAACGGCAACTTANGGGGCCTAAGCAGGGCCGGACCTAAAGCGCCGGCC GGTTCGGNAACAGGCANACGGGGGGNNCGCACGGCAAAAGCAGGCAANAAACCGACAACA CCTATGGNCACCACAAGNTCGCACAATACAACTCCATGNATANCAGTANTAAACCCCACC CACACACAANACANGAAACACGGGCTNTCTGGGGCGNACAGCTATCCC



consensusID : consensus_8225#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 915
fasta sequence
                              [CCNGGATTAACTCTTCTAATCTTATCTTTGATACTCCCCATTACAATGGCCGCTCTAATCTAGTNATGTGGTTTCCAATGCATAATCCATNTGCCATACGTCACCCCCAGTCCCACACACGTACACACCACAAATAACGGGATNTGTACGGGATATANGGGGTNTGTAGACGGTGGTGGTGTGGATGGANACACTGGTACCCACACACGTACACACCACAAATAACGGGATTGTACGGGATTNNGGGGTTNGTGACGGTGGTAGGTNGTGGATGGAAACACTNGGTAGTGTAAGCATACGCACCTTACGGCGTAAATTGTGCAACTCCGGGGCGATGCGAACCGGTCATGANACACAGCGGCCATTNTACAGTCCATTCATATNTCTNTATCTACTACATCACACAGTTCTCATAATAGGTAATTTANCCACATANACAGTAATNTTANCAGCAGCAAGAAGCAGGATCAGAGTGTGCAGCANGNAGCAGCAGCTCAGCAGCAGCAGCGAGCAGCAGCCAGAGCAGCAGGCAANTACAGGGCTANCAGGCGCACTAAAGCGCGCGTAGGAANNAGAACAGGGCAAGCAAGCAAAGCAGGGACAANCAAANGGCAAAACCTCATGTAACCANCATACGCAAANAAANATCCATTGGTAATAAGCAGTATAAATAACCAACAGCAAACTGGGAATNTGTACACAAAGAAATACNGTNNTACCGTGANTACCCCGGAGATAGTCCCCGNAACAAAAACTCAATATCAAACCTACTTTTTGAAACTTACACGGAGTAAAAAAGTAACAACGAGGGAGGACAACGTACTNTACGACAAGTNATACGAATGCTGGAAAACCCCTTGTGGTTATTAGGCTCTAATTANGGAATTNAACTNTTCAAAAGNTAAAAACCANCNT]

[+] EMBL AL697494             [CCNGGATTAACTCTTCTAATCTTATCTTTGATACTCCCCATTACAATGGCCGCTCTAATCTAGTNATGTGGTTTCCAATGCATAATCCATNTGCCATACGTCACCCCCAGTCCCACACACGTACACACCACAAATAACGGGATNTGTACGGGATATANGGGGTNTGTAGACGGTGGTGGTGTGGATGGANACACTGGTACCCACACACGTACACACCACAAATAACGGGATTGTACGGGATTNNGGGGTTNGTGACGGTGGTAGGTNGTGGATGGAAACACTNGGTAGTGTAAGCATACGCACCTTACGGCGTAAATTGTGCAACTCCGGGGCGATGCGAACCGGTCATGANACACAGCGGCCATTNTACAGTCCATTCATATNTCTNTATCTACTACATCACACAGTTCTCATAATAGGTAATTTANCCACATANACAGTAATNTTANCAGCAGCAAGAAGCAGGATCAGAGTGTGCAGCANGNAGCAGCAGCTCAGCAGCAGCAGCGAGCAGCAGCCAGAGCAGCAGGCAANTACAGGGCTANCAGGCGCACTAAAGCGCGCGTAGGAANNAGAACAGGGCAAGCAAGCAAAGCAGGGACAANCAAANGGCAAAACCTCATGTAACCANCATACGCAAANAAANATCCATTGGTAATAAGCAGTATAAATAACCAACAGCAAACTGGGAATNTGTACACAAAGAAATACNGTNNTACCGTGANTACCCCGGAGATAGTCCCCGNAACAAAAACTCAATATCAAACCTACTTTTTGAAACTTACACGGAGTAAAAAAGTAACAACGAGGGAGGACAACGTACTNTACGACAAGTNATACGAATGCTGGAAAACCCCTTGTGGTTATTAGGCTCTAATTANGGAATTNAACTNTTCAAAAGNTAAAAACCANCNT]


>consensus_8225#2 CCNGGATTAACTCTTCTAATCTTATCTTTGATACTCCCCATTACAATGGCCGCTCTAATC TAGTNATGTGGTTTCCAATGCATAATCCATNTGCCATACGTCACCCCCAGTCCCACACAC GTACACACCACAAATAACGGGATNTGTACGGGATATANGGGGTNTGTAGACGGTGGTGGT GTGGATGGANACACTGGTACCCACACACGTACACACCACAAATAACGGGATTGTACGGGA TTNNGGGGTTNGTGACGGTGGTAGGTNGTGGATGGAAACACTNGGTAGTGTAAGCATACG CACCTTACGGCGTAAATTGTGCAACTCCGGGGCGATGCGAACCGGTCATGANACACAGCG GCCATTNTACAGTCCATTCATATNTCTNTATCTACTACATCACACAGTTCTCATAATAGG TAATTTANCCACATANACAGTAATNTTANCAGCAGCAAGAAGCAGGATCAGAGTGTGCAG CANGNAGCAGCAGCTCAGCAGCAGCAGCGAGCAGCAGCCAGAGCAGCAGGCAANTACAGG GCTANCAGGCGCACTAAAGCGCGCGTAGGAANNAGAACAGGGCAAGCAAGCAAAGCAGGG ACAANCAAANGGCAAAACCTCATGTAACCANCATACGCAAANAAANATCCATTGGTAATA AGCAGTATAAATAACCAACAGCAAACTGGGAATNTGTACACAAAGAAATACNGTNNTACC GTGANTACCCCGGAGATAGTCCCCGNAACAAAAACTCAATATCAAACCTACTTTTTGAAA CTTACACGGAGTAAAAAAGTAACAACGAGGGAGGACAACGTACTNTACGACAAGTNATAC GAATGCTGGAAAACCCCTTGTGGTTATTAGGCTCTAATTANGGAATTNAACTNTTCAAAA GNTAAAAACCANCNT



consensusID : consensus_8225#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 710
fasta sequence
                              [CCGCGGACGCGTGGGCGAGCTGGAAAGTCACGTCATAGATTAAACATGACGATAAAAACATAAGGTGAGCCCCTTTTAAGCCACACACACACACACTACGACTGCCGAGGATTTGGACGTTGGAGGCCACGTGTAGATGATGAACCGATATCTGGTGGTCGACAGACAGAGTGACAGAGAGAGAGACAGAGGACATTCAGGGAGGGCAAATGAAACTCCTTCTAATCTTATCCTTTGATACTCCCCATTACCAATGGCCGCCTCTAATCTGTTTGTGGTTTCCAATGCATAATCCATTGCCATCGCCACCCCCCAGTCCCACACACGTACACACCACGGATAACGGGATTGTACGGGATTTGGGGGTGTGACGGTGGTGGTGTGGATGGAAACACTTGTGTGTAAGCCTCGCACCTTCGGCGTTAATTGTGCAACTCCGGGGGTTGCGAACCGGTATAAAAAAGCGGAATTTTACAGTCCATTATTTTCTTTCTACTACATACACAGTTTCATTTAGGTAATTTAAAAATAAAGTAATATTAAAGCAGCAGAAGCAGGATCAGAGAGTGCAGAAGAGAGAGTAGAGAGAGAGAGCAGAGAGAGGAATTAGGGCTAGAGGCGACTAAGCGCGCGTTGTAAAGAAAGGGAAGAAGCAAAGCAGGAAAAAAGAAAACCTATGTAACAAATTCGAAATTAAATCATGTATAGAG]

[+] EMBL BM613980             [CCGCGGACGCGTGGGCGAGCTGGAAAGTCACGTCATAGATTAAACATGACGATAAAAACATAAGGTGAGCCCCTTTTAAGCCACACACACACACACTACGACTGCCGAGGATTTGGACGTTGGAGGCCACGTGTAGATGATGAACCGATATCTGGTGGTCGACAGACAGAGTGACAGAGAGAGAGACAGAGGACATTCAGGGAGGGCAAATGAAACTCCTTCTAATCTTATCCTTTGATACTCCCCATTACCAATGGCCGCCTCTAATCTGTTTGTGGTTTCCAATGCATAATCCATTGCCATCGCCACCCCCCAGTCCCACACACGTACACACCACGGATAACGGGATTGTACGGGATTTGGGGGTGTGACGGTGGTGGTGTGGATGGAAACACTTGTGTGTAAGCCTCGCACCTTCGGCGTTAATTGTGCAACTCCGGGGGTTGCGAACCGGTATAAAAAAGCGGAATTTTACAGTCCATTATTTTCTTTCTACTACATACACAGTTTCATTTAGGTAATTTAAAAATAAAGTAATATTAAAGCAGCAGAAGCAGGATCAGAGAGTGCAGAAGAGAGAGTAGAGAGAGAGAGCAGAGAGAGGAATTAGGGCTAGAGGCGACTAAGCGCGCGTTGTAAAGAAAGGGAAGAAGCAAAGCAGGAAAAAAGAAAACCTATGTAACAAATTCGAAATTAAATCATGTATAGAG]


>consensus_8225#3 CCGCGGACGCGTGGGCGAGCTGGAAAGTCACGTCATAGATTAAACATGACGATAAAAACA TAAGGTGAGCCCCTTTTAAGCCACACACACACACACTACGACTGCCGAGGATTTGGACGT TGGAGGCCACGTGTAGATGATGAACCGATATCTGGTGGTCGACAGACAGAGTGACAGAGA GAGAGACAGAGGACATTCAGGGAGGGCAAATGAAACTCCTTCTAATCTTATCCTTTGATA CTCCCCATTACCAATGGCCGCCTCTAATCTGTTTGTGGTTTCCAATGCATAATCCATTGC CATCGCCACCCCCCAGTCCCACACACGTACACACCACGGATAACGGGATTGTACGGGATT TGGGGGTGTGACGGTGGTGGTGTGGATGGAAACACTTGTGTGTAAGCCTCGCACCTTCGG CGTTAATTGTGCAACTCCGGGGGTTGCGAACCGGTATAAAAAAGCGGAATTTTACAGTCC ATTATTTTCTTTCTACTACATACACAGTTTCATTTAGGTAATTTAAAAATAAAGTAATAT TAAAGCAGCAGAAGCAGGATCAGAGAGTGCAGAAGAGAGAGTAGAGAGAGAGAGCAGAGA GAGGAATTAGGGCTAGAGGCGACTAAGCGCGCGTTGTAAAGAAAGGGAAGAAGCAAAGCA GGAAAAAAGAAAACCTATGTAACAAATTCGAAATTAAATCATGTATAGAG



consensusID : consensus_8225#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 614
fasta sequence
                              [AAGCTGCAGGCCCAGGGTACGTCCGCGGTCAAGCCCGGGCAAAACCCGAGCGGCGGCAAGATGGCGTTCGTGGTGTGCGAGATCTGCGACGGCTACATCAAGGATCTGGACCAGCTGCGCAACCACATGCAGTGGATACACAAAGTGAAGATTCACCCGAAGATGATCTACAACCGACCGCCGCTGAATTGCCAAAAGTGTCAGTACCGGTTTTTCACCGATCAGGGCCTGGAGCGGCACCTGTTAGGCTCGCACGGCTTGGTGACGAGCTCGATGCAGGAGGCCGCCAACAAGGGCAAGGATGCTGGCCGCTGTCCAGTCTGTGGACGGGTGTACCAGTGGAAGCTGCTTAATCACGTGTCCCGCGATCACAACATGACCCTGAAACCTGCCCATCTCTCGTACAAATGTACCGTCTGCACGGCCACGTTCGGCATGTACAAGCAGTTCGAAAGCCACGTCTACTCCGCGCACAGTACGGTCGCGAAAAAGACGGGCGAAGGGAAGGGCAGCAAGGGTGGCGGCGGCAGCGGCTGTGGTGGCATGGGACAGCAGCAGACCTCATCCGGCATGGGTAGCAGTGGTGGATCTTCATCTTCCGGCGGCGCTGGCGG]

[+] EMBL BX604576             [AAGCTGCAGGCCCAGGGTACGTCCGCGGTCAAGCCCGGGCAAAACCCGAGCGGCGGCAAGATGGCGTTCGTGGTGTGCGAGATCTGCGACGGCTACATCAAGGATCTGGACCAGCTGCGCAACCACATGCAGTGGATACACAAAGTGAAGATTCACCCGAAGATGATCTACAACCGACCGCCGCTGAATTGCCAAAAGTGTCAGTACCGGTTTTTCACCGATCAGGGCCTGGAGCGGCACCTGTTAGGCTCGCACGGCTTGGTGACGAGCTCGATGCAGGAGGCCGCCAACAAGGGCAAGGATGCTGGCCGCTGTCCAGTCTGTGGACGGGTGTACCAGTGGAAGCTGCTTAATCACGTGTCCCGCGATCACAACATGACCCTGAAACCTGCCCATCTCTCGTACAAATGTACCGTCTGCACGGCCACGTTCGGCATGTACAAGCAGTTCGAAAGCCACGTCTACTCCGCGCACAGTACGGTCGCGAAAAAGACGGGCGAAGGGAAGGGCAGCAAGGGTGGCGGCGGCAGCGGCTGTGGTGGCATGGGACAGCAGCAGACCTCATCCGGCATGGGTAGCAGTGGTGGATCTTCATCTTCCGGCGGCGCTGGCGG]
[-] EMBL AGA282732            [              GGGTACGTCCGCGGTCAAGCCCGGGCAAAACCCGAGCGGCGGCAAGATGGCGTTCGTGGTGTGCGAGATCTGCGACGGGTACATCAAGGATCTGGACCAGCTGGGCAACCACATGCAGTGGATACACAAAGTGAAGATTCACCCGAAGATGATCTACAACCGACCGCCGCTGAATTGCCAAAAGTGTCAGTACCGGTTTTTCACCGATCAGGGCCTGGAGCGGCACCTGTTAGGCTCGCACGGCTTGGTGACGAGCTCGATGCAGGAGGCCGCCAACAAGGGCAAGGAT                                                                                                                                                                                                                                                                                                                       ]


>consensus_8225#4 AAGCTGCAGGCCCAGGGTACGTCCGCGGTCAAGCCCGGGCAAAACCCGAGCGGCGGCAAG ATGGCGTTCGTGGTGTGCGAGATCTGCGACGGCTACATCAAGGATCTGGACCAGCTGCGC AACCACATGCAGTGGATACACAAAGTGAAGATTCACCCGAAGATGATCTACAACCGACCG CCGCTGAATTGCCAAAAGTGTCAGTACCGGTTTTTCACCGATCAGGGCCTGGAGCGGCAC CTGTTAGGCTCGCACGGCTTGGTGACGAGCTCGATGCAGGAGGCCGCCAACAAGGGCAAG GATGCTGGCCGCTGTCCAGTCTGTGGACGGGTGTACCAGTGGAAGCTGCTTAATCACGTG TCCCGCGATCACAACATGACCCTGAAACCTGCCCATCTCTCGTACAAATGTACCGTCTGC ACGGCCACGTTCGGCATGTACAAGCAGTTCGAAAGCCACGTCTACTCCGCGCACAGTACG GTCGCGAAAAAGACGGGCGAAGGGAAGGGCAGCAAGGGTGGCGGCGGCAGCGGCTGTGGT GGCATGGGACAGCAGCAGACCTCATCCGGCATGGGTAGCAGTGGTGGATCTTCATCTTCC GGCGGCGCTGGCGG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8225#1      ------------------------------------------------------------
consensus_8225#2      ------------------------------------------------------------
consensus_8225#3      ------------------------------------------------------------
consensus_8225#0      AATCCCCGAGGTTAAAGCGGACGCGTGCTGTTGACGTCTCCCGTGTCGCTGCGTGCGCCT 60
consensus_8225#4      ------------------------------------------------------------
                                                                                  

consensus_8225#1      ------------------------------------------------------------
consensus_8225#2      ------------------------------------------------------------
consensus_8225#3      ------------------------------------------------------------
consensus_8225#0      CTAACGTTGGCCAAAGAAGTGAAAGAGAAGCAAACCGTGTGTGTGTGTGTATGTGTGCGC 120
consensus_8225#4      ------------------------------------------------------------
                                                                                  

consensus_8225#1      ------------------------------------------------------------
consensus_8225#2      ------------------------------------------------------------
consensus_8225#3      ------------------------------------------------------------
consensus_8225#0      GTACAGCGGATGTTGGCAGTGAGGAAGAAGAAGTGGAAGCTGCTTAATCACGTGTCCCGC 180
consensus_8225#4      ------------------------------------------------------------
                                                                                  

consensus_8225#1      ------------------------------------------------------------
consensus_8225#2      ------------------------------------------------------------
consensus_8225#3      ------------------------------------------------------------
consensus_8225#0      GATCACAACATGACCCTGAAACCTGCCCATCTCTCGTACAAATGTACCGTCTGCACGGCA 240
consensus_8225#4      ------------------------------------------------------------
                                                                                  

consensus_8225#1      ------------------------------------------------------------
consensus_8225#2      ------------------------------------------------------------
consensus_8225#3      ------------------------------------------------------------
consensus_8225#0      CGTTCGGCATGTACAAGCAGTTCGAAAGCCACGTCTACTCCGCGCACAGTACCGTCGCGA 300
consensus_8225#4      ------------------------------------------------------------
                                                                                  

consensus_8225#1      ------------------------------------------------------------
consensus_8225#2      ------------------------------------------------------------
consensus_8225#3      ------------------------------------------------------------
consensus_8225#0      AAAAGACGGGCGAAGGGAAGGGCAGCAAGGGTGGCGGCGGCAGCGGCGGTGGTGGCATGG 360
consensus_8225#4      ------------------------------------------------------------
                                                                                  

consensus_8225#1      ------------------------------------------------------------
consensus_8225#2      ------------------------------------------------------------
consensus_8225#3      ------------------------------------------------------------
consensus_8225#0      GACAGCAGCAGACCTCATCCGGCATGGGTAGCAGTGGTGGATCTTCATCTTCGGGCGGCG 420
consensus_8225#4      ------------------------------------------------------------
                                                                                  

consensus_8225#1      ------------------------------------------------------------
consensus_8225#2      ------------------------------------------------------------
consensus_8225#3      ------------------------------------------------------------
consensus_8225#0      CTGGCGGACTGAGGAATCCGTTCGTGGGCGGTGGCGATTCGCTGCTGAAGCCGCTCAAGA 480
consensus_8225#4      ------------------------------------------------------------
                                                                                  

consensus_8225#1      ------------------------------------------------------------
consensus_8225#2      ------------------------------------------------------------
consensus_8225#3      ------------------------------------------------------------
consensus_8225#0      TTAACGACGAAATCACGATCATCCCGCAGCCGACCTCCAACAGCAAGATGGCGAAAACGA 540
consensus_8225#4      ------------------------------------------------------------
                                                                                  

consensus_8225#1      --------------------------GCAGATCGGCCGGAGTTACTCCAACAGCAAGATG 34
consensus_8225#2      -------------------------CCNGGATTAACTCTTCTAATCTTATCTTTGATACT 35
consensus_8225#3      ----------------------------------------------------------CC 2
consensus_8225#0      TCGAGCTGGAAAGTCACGTCATAGGTGAGGGATGAACTAGGGCAATGCAGTTCAAAGAAT 600
consensus_8225#4      ------------------------------------------------------------
                                                                                  

consensus_8225#1      GCGCA---ACGATCGA-GCTGGAAAGTCACGTTATAGATTAAACATGACGATAAAAACAT 90
consensus_8225#2      CCCCAT-TACAATGGCCGCTCTAATCTAGTNATGTGGTTTCCAATGCATAATCCATNTGC 94
consensus_8225#3      GCGGACGCGTGGGCGA-GCTGGAAAGTCACGTCATAGATTAAACATGACGATAAAAACAT 61
consensus_8225#0      CCGTAT-CACATTTTAACCGATTTCTCTTCTTTGTAGATTAAACATGACGATAAAAACAT 659
consensus_8225#4      -----------------------------------------------AAGCTGCAGGCCC 13
                                                                     *   *  *     

consensus_8225#1      AAGGTGAGCCCCTTTTAAGCCACACACACACACAC----TACGACTGCCGAGGATTTGGA 146
consensus_8225#2      CATACGT-CACCCCCAGTCCCACACACGTACACAC----CACAAATAACG-GGATNTGTA 148
consensus_8225#3      AAGGTGAGCCCCTTTTAAGCCACACACACACACAC----TACGACTGCCGAGGATTTGGA 117
consensus_8225#0      AAGGTGAGCCCCTTTTAAGCCACACACACACACACACACTACGACTGCCGAGGATTTTGG 719
consensus_8225#4      AGGGTACGTCCGCGGTCAAGCCCGGGCAAA-ACCC----GAGCGGCGGCAAGATGGCGTT 68
                                *         * *   *  * ** *     *       *  *        

consensus_8225#1      CGT--TGGAGGCCACGTGTAGATGATGA--------ACCGATAT-CTGG--TGGTCG-AC 192
consensus_8225#2      CGGGATATANGGGGTNTGTAGACGGTGGTGGTGTGGATGGANACACTGG--TACCCACAC 206
consensus_8225#3      CGT--TGGAGGCCACGTGTAGATGATGA--------ACCGATAT-CTGG--TGGTCG-AC 163
consensus_8225#0      GACGTTAGAGGCCACGTGTAGATGATGA--------ACCGATAT-CTGG--TGGTCG-AC 767
consensus_8225#4      CGTGGTGTGCGAGATCTGC-GACGGCTAC-------ATCAAGGATCTGGACCAGCTGCGC 120
                           *    *     **  ** *            *   *    ****          *

consensus_8225#1      AGACAGA-GTGACAGAGAGAGAGACAGAGCGACATTCAGAGGAGGGCAAATGA--AACTC 249
consensus_8225#2      ACGTACACACCACAAATAACGGGATTGTACGGGATTNNGGGGTTNGTGACGGT--GGTAG 264
consensus_8225#3      AGACAGA-GTGACAGAGAGAGAGACAGAG-GACATTCAG-GGAGGGCAAATGA--AACTC 218
consensus_8225#0      AGACAGA-GTGACAAA----GAGACAGAG-GACATTCAG-GGAGGGCAAATGA--AACTC 818
consensus_8225#4      AACCACATGCAGTGGATACACAAAGTGAAGATTCACCCGAAGATGATCTACAACCGACCG 180
                      *   * *        *       *  *           *  *                  

consensus_8225#1      CTTCTAATCTATATCCTTTGATACTCCCCATT----ACCA-ATGGCCGCTCTAATCTGTA 304
consensus_8225#2      GTNGTGGATGGAAACACTNGGTAGT----GTA----AGCATACGCACCTTACGGCGTAAA 316
consensus_8225#3      CTTCTAATCT-TATCCTTTGATACTCCCCATT----ACCAATGGCCGCCTCTAATCTGT- 272
consensus_8225#0      CTTCTAATCT-TATCCTTTGATACTCCCCATT----ACCAATGGCCGCCTCTAATCTGT- 872
consensus_8225#4      CCGCTGAATTGCCAAAAGTGTCAGTACCGGTTTTTCACCGATCAGGGCCTGGAGCGGCAC 240
                          *              *  * *     *     * *          *          

consensus_8225#1      TTGTG-GTTTCCAATGCATAATCCATTGACATCGACACCCCCA-GTCCCACACACGTACA 362
consensus_8225#2      TTGTGCAACTCCGGGGCGATGCGAACCGGTCATGANACACAGC-GGCCATTNTACAGTCC 375
consensus_8225#3      TTGTG-GTTTCCAATGCATAATCCATTGCCATCGCCACCCCCCAGTCCCACACACGTACA 331
consensus_8225#0      TTGTG-GTTTCCAATGCATAATCCATTGCCATCGTCACCCCCCAGTCCCACACACGTACA 931
consensus_8225#4      CTGTTAGGCTCGCACGGCTTGGTGAC-GAGCTCGATGCAGGAG-GCCGCCAACAAGGGCA 298
                       ***     **    *        *  *     *   *      * *      *    * 

consensus_8225#1      CACCACAGGGAATAACCGGGATNTAGTAACGGGATTCAGGCGNGGTAGTGACCGCGTAGG 422
consensus_8225#2      ATTCATAT------NTCTNTATCTACTA-CATCACACAGTTCTCATAATAG----GTAAT 424
consensus_8225#3      CACCACGG------ATAACGGGATTGTA-CGGGATTTGGGGGT-GTGACGG--------- 374
consensus_8225#0      CACCACAA------ATAACGGGATTGTA-CGGGATTTGGGGTT-GTGACGG--------- 974
consensus_8225#4      AGG-ATGC----TGGCCGCTGTCCAGT--CTGTGGACGGGTGTACCAGTGG--AAGCTGC 349
                          *                     *  *        *                     

consensus_8225#1      TGCGTGGTAGGACTGGAACACACTATGTGTTGTAAAGCCTACGCCACCTATACGTGCGTA 482
consensus_8225#2      TTANCCACATANACAGTA-ATNTTANCAGCAGCAAG----AAGCAGGATCAGAGTGTGCA 479
consensus_8225#3      -TGGTGGTGTGGATGGAA-ACACT-TGTGT-GTAAG--CCTCGCACCTTCGGCGTTAATT 428
consensus_8225#0      -TGGTGGTGTGGATGGAA-ACACT-GGTGT-GTAAG--CATCGCACCTTCGGCGTTAATT 1028
consensus_8225#4      TTAATCACGTGTCCCGCGATCACAACATGACCCTGA--------AACCTGCCCATCTCTC 401
                                     *            *                   *     *     

consensus_8225#1      TCACATTTGTGCCAACTCCGNGGGCGTTGACGAAGGGTATAACAAAACANGCGGAATTAT 542
consensus_8225#2      GCANGNA-GCAGCAGCTCAGCAG-CAGCAGCGAGCAGCA-GCCAGAGCAGCAGGCA--AN 534
consensus_8225#3      GTGCAACTCCGGGGGTTGCGAAC-CGGTATAAAAAAGCGGAATTTTACAGTC--CATTAT 485
consensus_8225#0      GTGCAACTCCGGGGGATGCGAAC-CGGTATGAAAAAGCGGAATTTTACAGTC--CATTAT 1085
consensus_8225#4      GTACAAATGTACCGTCTGCACGG----CCACGTTCGGCATGTACAAGCAGTTCGAA---A 454
                                      *                   *          **      *    

consensus_8225#1      NACAGGTCCCATCTAATNTAACTAACTAACTACACTA-CCAGCACGGTTCCACTNCNCCG 601
consensus_8225#2      TACAGGGCT-ANCAGGCGCACTAAAGCGCGCGTAGGAANNAGAACAGGGCAAGCAAGCAA 593
consensus_8225#3      TTTCTTTCT-ACTACATACACAGTTTCATTTAGGTAATTTAAAAATAAAGTAATA-TTAA 543
consensus_8225#0      TTTCTTTCT-ACTACATACACAGTTTCATTTAGGTAATTTAAAAATAAAGTAATA-TTAA 1143
consensus_8225#4      GCCACGTCT-ACTCCGCGCACAGTA-CGGTCGCGAAA---AAGACGGGCGAAGGG--AAG 507
                             *  *        *                *   *  *       *        

consensus_8225#1      CGTACAATTTAGCAAGCANATAAAACGCTCACTATTCTA-ACAAGCCAAGNCGANCCACG 660
consensus_8225#2      AGCAGGGACAANCAAAN-GGCAAAAC-CTCATGTAACCA-NCATACGCAAANAAANATCC 650
consensus_8225#3      AGCAGCAG-AAGCAGGATCAGAGAGTGCAGAAGAG---A-GAGTAGAGAGAGAGAGCAGA 598
consensus_8225#0      AGCAGCAG-AAGCAGGATCAGAGTGTGCAGAAGAGAGAGTAGAGAGAGAGAGAGAGCAGA 1202
consensus_8225#4      GGCAGCAA--GGGTGGCGGCGGCAGCGGCTGTGGTGGCA-TGGGACAGCAGCAGACCTCA 564
                       * *                                                        

consensus_8225#1      CCACGCGACTCCAGGAAGAAGTGCNAGNACACGANCAGAAGNTNCGCAGACGGAGAGAAN 720
consensus_8225#2      ATTGGTAATAAGCAGTATAAATAACCAACAGCAAACTGGGAATNTGTACACAAAGAAATA 710
consensus_8225#3      GAGAGGAATTAGGGCTAGAGGCGACTAAGCGCGCGTTGTAAAGAAAGGGAAGAAGCAAAG 658
consensus_8225#0      GAGAGGAATTAGGGCTAGAGGCGACTAAGCGCGCGTTGTAAAGAAAG------------- 1249
consensus_8225#4      TCCGGC-ATGGGTAGCAGTGGTGGATCTTCATCTTCCGGCGGCGCTGGCGG--------- 614
                          *  *        *                    *                      

consensus_8225#1      CCACGACGAAGCAACGGCAACTTANGGGGCCTAAGCAGGGCCGGACCTAAAGCGCCGGCC 780
consensus_8225#2      CNGTNNTACCGTGANTACCCCGGAGATAGTCCC--CGNAACAAAAACTCAATATCAAACC 768
consensus_8225#3      CAGGAAAAAAGAAAACCTATGTAACAAATTCGAAATTAAATCATGTATAGAG-------- 710
consensus_8225#0      ------------------------------------------------------------
consensus_8225#4      ------------------------------------------------------------
                                                                                  

consensus_8225#1      GGTTCGGNAACAGGCANACGGGGGGNNCGCACGGCAAAAGCAGGCAANAAACCGACAACA 840
consensus_8225#2      TACTTTTTGAAACTTACACGGAGTAAA---AAAGTAACAACGAGGGAGGA--CAACGTAC 823
consensus_8225#3      ------------------------------------------------------------
consensus_8225#0      ------------------------------------------------------------
consensus_8225#4      ------------------------------------------------------------
                                                                                  

consensus_8225#1      CCTATGGNCA-CCACAAGNTCGCACAATACAACTCCATGNATANCAGTANTAAACCCCAC 899
consensus_8225#2      TNTACGACAAGTNATACGAATGCTGGAAAACCCCTTGTGGTTATTAGGCTCTAATTANGG 883
consensus_8225#3      ------------------------------------------------------------
consensus_8225#0      ------------------------------------------------------------
consensus_8225#4      ------------------------------------------------------------
                                                                                  

consensus_8225#1      CCACACACAANACANGAAACACGGGCTNTCTGGGGCGNACAGCTATCCC 948
consensus_8225#2      AATTNAACTNTTCAAAAGNTAAAAACCANCNT----------------- 915
consensus_8225#3      -------------------------------------------------
consensus_8225#0      -------------------------------------------------
consensus_8225#4      -------------------------------------------------
                                                                       




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)