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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8246#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 834 fasta sequence
[CGACACCAGAAACTCTCCAGGGGGAACAGAAACATGCTAGAAATTAATGCAAAATTACTGCGAGATCAAAGTGCAGTGTTTATGTGCGGTGAGGTGGTGGAGTGTTTAATTGATTTCATTCACCCATCCCTACCGGAGCACAAGATTTCACAGAGCAATAGTGATATTTTGGAAAATCTTGCCTGGGCGACGGTGCAGCTGCACTGCTACTGCAACGCCTCGTTTAACGAGAAAGCTCCGCATGATGCTGCCGCGAACAGAAACGTTGGCGGCAGCACGTCGCTAAACGCCAGCAACCAGCTCAAGGGAGAGGTGCTGCACTCGACCGAACCGAAGATACTGTTCTGCGATCTGCGCCTGTCCCCGGGAGAAGCAAAACAATTTTTGTATCGTGAAACCGTGCCACTGAATACGCCGCCCACGTACCGCGGAATTCGCGTAAAGTATTACTACAAAATCACGGTTGCCACGCAACGGCTAGGCTCAACCATGCAGGCGCTAAACATTCCGATCCGCGTGCTCCCGCTCCCGCTGCCCCAGAGCGATCTCGACGAAGCGATCACGCTGAACGATGAGTCGAACGAAGATCTGGCACCGAACAACCCGTTCCTGGAGAAGAAGC-GGCCGCCGTCGCGCATCGAGTACGCGCTGCACTACTT-GCGCGGCGTGACCGCACG-CGCCGGCCAAACTTCTTCATGATCAACAACAAATGGGGCAAGGTGGGCCGGTTCTGTCTGTTCAAGTCGGCGTACAAGCTCGGCGAGGACATCGTGGCCACGATCGATTTTAGCTGCAAATACCGCAGCCCTGTGGGGAGTACAAGCTAAACATTAA]
[+] EMBL CNS09B7I [CGACACCAGAAACTCTCCAGGGGGAACAGAAACATGCTAGAAATTAATGCAAAATTACTGCGAGATCAAAGTGCAGTGTTTATGTGCGGTGAGGTGGTGGAGTGTTTAATTGATTTCATTCACCCATCCCTACCGGAGCACAAGATTTCACAGAGCAATAGTGATATTTTGGAAAATCTTGCCTGGGCGACGGTGCAGCTGCACTGCTACTGCAACGCCTCGTTTAACGAGAAAGCTCCGCATGATGCTGCCGCGAACAGAAACGTTGGCGGCAGCACGTCGCTAAACGCCAGCAACCAGCTCAAGGGAGAGGTGCTGCACTCGACCGAACCGAAGATACTGTTCTGCGATCTGCGCCTGTCCCCGGGAGAAGCAAAACAATTTTTGTATCGTGAAACCGTGCCACTGAATACGCCGCCCACGTACCGCGGAATTCGCGTAAAGTATTACTACAAAATCACGGTTGCCACGCAACGGCTAGGCTCAACCATGCAGGCGCTAAACATTCCGATCCGCGTGCTCCCGCTCCCGCTGCCCCAGAGCGATCTCGACGAAGCGATCACGCTGAACGATGAGTCGAACGAAGATCTGGCACCGAACAACCCGTTCCTGGAGAAGAAGC GGCCGCCGTCGCGCATCGAGTACGCGCTGCACTACTT GCGCGGCGTGACCGCACG CGCCGGCCAAACTTCTTCATGATCAACAACAAATGGGGCAAGGTGGGCCGGTTCTGTCTGTTCAAGTCGGCGTACAAGCTCGGCGAGGACATCGTGGCCACGATCGATTTTAGCTGCAAATACCGCAGCCCTGTGGGGAGTACAAGCTAAACATTAA]
[-] EMBL AGA284472 [ CTGCTACTGCAACGCTTCGTTCAACGAGAAAGGTCCGCATGATGCTGCCGCGAACAGAAACGTTGGCGGCAGCACGTCGCTAAACGCCAGCAACCAGCTCAAGGGAGAGGTGCTGCACTCGACCGAACCGAAGATACTGTTCTGCGATTTGCGCCTGTCCCCGGGAGAAGCAAAACAATTTTTGTATCGTGAAACCGTGCCACTGAATACGCCGCCCACGTACCGTGGAATTCGCGTAAAGTATTACTACAAAATCACGGTTGCCACGCAACGGCTAGGCTCAACCGTGCAGGCGCTAAACATTCCGATCCGCGTGCTCCCGCTCCCGCTGCCCCAGAGCGATCTCGACGAAGCGATCACGCTGAACGATGAGTCGAACGAAGATCTGGCACCGAACAACCCGTTCCT ]
[-] EMBL CNS09B7J [ gTGTCCCCGGGAGAAGCAAAACAATTTTTGTATCGTGAAACCGTGCCACTGAATACGCCGCCCACGTACCGCGGGATTCGCGTAAAGTATTACTACAAAATCACGGTTGCCACGCAACGGCTAGGCTCAACCATGCAGGCGCTAAACATTCCGATCCGCGTGCTCCCGCTCCCGCTGCCCCAGAGCGATCTCGACGAAGCGATCACGCTGAACGATGAGTCGAACGAAGGTTTGGCACCGAACAACCCGTTCCTGGAGAAGAAGCGGGCCGCCGTCGCGCATCGAGTACGCGCTGCACTACTTGGCGCGGCGTGACCGCACGCCGCCGGCCAAACTTCTTCATGATCAACAACAAATGGGGCAAGGTGGGCCGGTTCTGTCTGTTCAAGTCGGCGTACAAGCTCGGCGAGGACATCGTGGCCACGATCGATTTTAGCTGCAAATACCGCAGCCCTGTGGGGAGTACAAGCTAAA ]
consensusID : consensus_8246#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 761 fasta sequence
[TCGAGTACGCGCTGCACTACTTGCGCGGCGTGACCGCACGCCGCCGGCCAAACTTCTTCATGATCAACAACAAATGGGGCAAAGTGGGCCGGTTCTGTCTGTTCAAGTCGGCGTACAAGCTCGGCGAGGACATCGTGGCCACGATCGATTTTAGCTGCGGTACGATCAAGTGTGTGCAGCTTTCCGTCACGTTGCAGTGCGAAGAAACGGAGCTGTTGCATGGTGCCGTCTCACCGCCGAGCGGTACGCCCAGTGCAAAGGAAGACTCGAAAGGGGCGGACAGTGCCGATGTTGCCTCGAGCACCGCCGAGGGTGCGAACGAGCCGGAACGGCCGAAGAACATTTCCCGCGTGACCAACTACAGCAAGCATCACGAAGTGTGCCTGGGCATGCTGCAGACGCAAGTGATCCTGCCCATCCCGCTGCACGTCACTCCCACCTTCCGGACGGAGCTGATCGAGGTCAGCTGGCGGTTACACTTTCAGTTCGTGACCAGCACGAACGCGGAGCTGAGCAGCGAGATGCTGCTCGATCGCACCGCCGAAAGCCAAGAAAGGCTGGAGTGGGTCGCAACGACGGACATTGCGATCGAGACGATGATCTGGAGCCTTCCGATTACGATCTACCCGACGGCACCGCTGCAAATACCGCAGCCCTGTGGGGAGTACAAGCTAAACATTAAGTAACGTTCTGTGCCGG-CTGCCGTGCAATAAACCAAGTCCTTTTCTGTGGCGCTGGAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AGA280871 [TCGAGTACGCGCTGCACTACTTGCGCGGCGTGACCGCACGCCGCCGGCCAAACTTCTTCATGATCAACAACAAATGGGGCAAAGTGGGCCGGTTCTGTCTGTTCAAGTCGGCGTACAAGCTCGGCGAGGACATCGTGGCCACGATCGATTTTAGCTGCGGTACGATCAAGTGTGTGCAGCTTTCCGTCACGTTGCAGTGCGAAGAAACGGAGCTGTTGCATGGTGCCGTCTCACCGCCGAGCGGTACGCCCAGTGCAAAGGAAGACTCGAAAGGGGCGGACAGTGCCGATGTTGCCTCGAGCACCGCCGAGGGTGCGAACGAGCCGGAACGGCCGAAGAACATTTCCCGCGTGACCAACTACAGCAAGCATCACGAAGTGTGCCTGGGCATGCTGCAGACGCAAGTGATCCTGCCCATCCCGCTGCACGTCACTCCCACCTTCCGGACGGAGCTGATCGAGGTCAGCTGGCGGTTACACTTTCAGTTCGTGACCAGCACGAACGCGGAGCTGAGCAGCGAGATGCTGCTCGATCGCACCGCCGAAAGCCAAGAAAGGCTGGAGTGGGTCGCAACGACGGACATTGCGATCGAGACGATGATCTGGAG ]
[+] EMBL AGA281504 [ GAGTACGCGCTGCACTACTTGCGCGGCGTGACCGCACGCCGCC GCCAAACTTCTTCATGATCAACAACAAATGGGGCAAAGTGGGCCGGTTCTGTCTGTTCAAGTCGGCGTACAAGCTCGGCGAGGACATCGTGGCCACGATCGATTTTAGCTGCGGTACGATCAAGTGTGTGCAGCTTTCCGTCACGTTGCAGTGCGAAGAAACGGAGCTGTTGCATGGTGCCGTCTCACCGCCGAGCGGTACGCCAAGTGCAAAGGAAGACTCGAAAGGGGCGGACAGTGCCGATGTTGCC ]
[-] EMBL AGA282498 [ GACTCGAAAGGGGCGGACAGTGCCGATGTTGCCTCGAGCACCGCCGAGGGTGCGAACGAGCCGGAACGGCCGAAGAACATTTCCCGCGTGACCAACTACAGCAAGCATCACGAAGTGTGCCTGGGCATGCTGCAGACGCAAGTGATCCTGCCCATCCCGCTGCACGTCACTCCCACCTTCCGGACGGAGCTGATCGAGGTCAGCTGGCGGTTACACTTTCAGTTCGTGACCAGCACGAACGCGGAGCTGAGCAGCGAGATGCTGCTCGATCGCACCGCCGAAAGCGAGGAAGGGCTGGAGTGGGTCGCACCGACGGACATTGCGATCGAGACGATGATCTGGAGCCTTCCGATTACGATCTACCCGACGGCACCGCTGCAAATACCGCAGCCCTGTGGGGAGTACAAGCTAAACATTAAGTAACGTTCTGTGCCGG CTGCCGTGCAATAAACCAAGTCCTT ]
[-] EMBL AGA283097 [ GATCGAGACGATGATCTGGAGCCTTCCGATTACGATCTACCCGACGGCACCGCTGCAAATACCGCAGCCCTGTGGGGAGTACAAGCTAAACATTAAGTAACGTTCTGTGCCGGACTGCCGTGCAATAAACCAAGTCCTTTTCTGTGGCGCTG ]
[-] EMBL BM646802 [ GATTTACCCGACGGCCCCGCTGCAAATACCGCAGCCCTGTGGGGGGTACAAGCTAAACATTAAGTAACGTTTTGTGCCGG CTGCCGTGCAATAAACCAAGTCCTTTTTTGTGGGGGTGGAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_8246#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 366 fasta sequence
[GCCGCCGGGTACTACCGATAACAGATAAAACCGTTTTTTAGTCGTTCGCGCACGCCCGCGTTTCGATCGAGCAATTGGAGCTTTGGGGAATTAAACTGGAAACCCATCCACAGGAGGGAAGAACATGCCCTTCCCTCGTAGTGACACAGCAGGGAGCATCAGAGGATTGCATCATTTCAGGCAACACACATCCGTCGACTGCGAACTGTGCTGCAACGAACGCAAGTGATATTTTGGAAAATCTTGCCTGGGCGACGGTGCATCTGCACTGCTACTGCAACGCCTCGTTCAACGAGAAAGGTCCGCATGATGCTGCCGCGAACAAAAACGTTGGCGGGAGCACGTCGCTAAACGCCAGAAACCAGC]
[+] EMBL AGA285777 [GCCGCCGGGTACTACCGATAACAGATAAAACCGTTTTTTAGTCGTTCGCGCACGCCCGCGTTTCGATCGAGCAATTGGAGCTTTGGGGAATTAAACTGGAAACCCATCCACAGGAGGGAAGAACATGCCCTTCCCTCGTAGTGACACAGCAGGGAGCATCAGAGGATTGCATCATTTCAGGCAACACACATCCGTCGACTGCGAACTGTGCTGCAACGAACGCAAGTGATATTTTGGAAAATCTTGCCTGGGCGACGGTGCATCTGCACTGCTACTGCAACGCCTCGTTCAACGAGAAAGGTCCGCATGATGCTGCCGCGAACAAAAACGTTGGCGGGAGCACGTCGCTAAACGCCAGAAACCAGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8246#0 ------------------------------------------------CG-ACACCAGAA 11
consensus_8246#2 GCCGCCGGGTACTACCGATAACAGATAAAACCGTTTTTTAGTCGTTCGCGCACGCCCGCG 60
consensus_8246#1 -----------------------------------------TCGAGTACGCGCTGCACTA 19
** * *
consensus_8246#0 ACTCTCCAGGGGGAACAGAAACATGCTAGAAATTAA--TGCAAAATTA-CTGCGAGATCA 68
consensus_8246#2 TTTCGATCGAGCAATTGGAGCTTTG--GGGAATTAAACTGGAAACCCATCCACAGGAGGG 118
consensus_8246#1 CTTGCGCGGCGTGACCGCACGC-CGCCGGCCAAACTTCTTCATGATCAACAACAAATGGG 78
* * * * * * * * * * * * *
consensus_8246#0 A-AGTGCAG--TGTTTATGTGCGGTGAGGTGGTGGAGTGT-TTAATTGATTTCATT---- 120
consensus_8246#2 A-AGAACATGCCCTTCCCTCGTAGTGACACAGCAGGGAGCATCAGAGGATTGCATCATTT 177
consensus_8246#1 GCAAAGTGGGCCGGTTCTGTCTGTTCAAGTCGGCGTACAAGCTCGGCGAGGACATCGTGG 138
* * * * * * ** ***
consensus_8246#0 -------CACCCATCCCT-ACCGGAGCACAAGATTTCACAGAGCAATA----GTGATATT 168
consensus_8246#2 CAGGCAACACACATCCGTCGACTGCGAACTGTGCTGCAACGAACGCAA----GTGATATT 233
consensus_8246#1 CCACGATCGATTTTAGCTGCGGTACGATCAAGTGTGTGCAGCTTTCCGTCACGTTGCAGT 198
* * * * * * * ** * *
consensus_8246#0 TTGGAAAATCTTGCCTGGGCGACGGTGCAGCTGCACTGCT-ACTGCAACGCCTCGTTTAA 227
consensus_8246#2 TTGGAAAATCTTGCCTGGGCGACGGTGCATCTGCACTGCT-ACTGCAACGCCTCGTTCAA 292
consensus_8246#1 GCGAAGAAACGGAGCTGTTGCATGGTGCCGTCTCACCGCCGAGCGGTACGCCCAGTGCAA 258
* * ** * *** * ***** *** ** * * ***** ** **
consensus_8246#0 CGAGAAAGCTCCGCATGATGCTGCCGCGAACAGAAACGTTGGCGGCAGCACGTCGCTAAA 287
consensus_8246#2 CGAGAAAGGTCCGCATGATGCTGCCGCGAACAAAAACGTTGGCGGGAGCACGTCGCTAAA 352
consensus_8246#1 --AGGAAGACTCGAAAGGGGCGGAC---AGTGCCGATGTTGCCTCGAGCACCGCCGAGGG 313
** *** ** * * ** * * * * **** * ***** *
consensus_8246#0 CGCCAGCAA-CCAGCTCAAGGGAGAGGTGCTGCACTCG-ACCGAACCGAAGATACTGTTC 345
consensus_8246#2 CGCCAGAAA-CCAGC--------------------------------------------- 366
consensus_8246#1 TGCGAACGAGCCGGAACGGCCGAAGAACATTTCCCGCGTGACCAACTACAGCAAGCATCA 373
** * * ** *
consensus_8246#0 TGCGATCTGCGCCTGTCCCCGGGAGAAGCAAAACAATTTTTGTATCGTGAAAC-CGTGCC 404
consensus_8246#2 ------------------------------------------------------------
consensus_8246#1 CGAAGTGTGCCTGGGCATGCTGCAGACGCAAGTGATCCTGCCCATCCCGCTGCACGTCAC 433
consensus_8246#0 ACTGAATACGCCGCCCACGTACCGCGGAATTCGCGTAAAGTATTACTACAAAATCACGGT 464
consensus_8246#2 ------------------------------------------------------------
consensus_8246#1 TCCCACCTTCCGGACGGAGCTGATCGAGGTCAGCTGGCGGTTACACTTTCAGTTCGTGAC 493
consensus_8246#0 TGCCACGCAACGGCTAGGCTCAACCATGCAGGCGCTAAACATTCCGATCCGCGTGCTCCC 524
consensus_8246#2 ------------------------------------------------------------
consensus_8246#1 CAGCACGAAC--GCGGAGCTGAGCAGCG-AGATGCTGCTCGATCGCACCGCCGAAAGCCA 550
consensus_8246#0 GCTCCCGCTGCCCCAGAGCGATCTCGACGAAGCGATCACGCTGAACGATGAGTCGAACGA 584
consensus_8246#2 ------------------------------------------------------------
consensus_8246#1 AGAAAGGCTGGAGTGGGTCG-CAACGACGGACATTGCGATCGAGACGATGATCTGGA--G 607
consensus_8246#0 AGATCTGGCACCGAACAACCCGTTCCTGGAGAAGAAGCGGCCGCCGTCGCGCATCGAGTA 644
consensus_8246#2 ------------------------------------------------------------
consensus_8246#1 CCTTCCGATTACGATCTACCCGACGGCACCGCTGCAAATACCGCAGCCCTGTGGGGAGTA 667
consensus_8246#0 CGCGCTGCACT---ACTTGCGCGGCGTGACCGCACGCGCCGGCCAAACTTCTTCATGATC 701
consensus_8246#2 ------------------------------------------------------------
consensus_8246#1 CAAGCTAAACATTAAGTAACGTTCTGTGCCGGCTGCCGTGCAATAAACCAAGTCCTTTTC 727
consensus_8246#0 AACAACAAATGGGGCAAGGTGGGCCGGTTCTGTCTGTTCAAGTCGGCGTACAAGCTCGGC 761
consensus_8246#2 ------------------------------------------------------------
consensus_8246#1 TGTGGCGCTGGAAAAAAAAAAAAAAAAAAAAAAA-------------------------- 761
consensus_8246#0 GAGGACATCGTGGCCACGATCGATTTTAGCTGCAAATACCGCAGCCCTGTGGGGAGTACA 821
consensus_8246#2 ------------------------------------------------------------
consensus_8246#1 ------------------------------------------------------------
consensus_8246#0 AGCTAAACATTAA 834
consensus_8246#2 -------------
consensus_8246#1 -------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||