cluster # 826

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Anopheles gambiae
cluster # 826 cluster # 826 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_826#0 length = 690 sequences # 1

consensus_826#1 length = 617 sequences # 1

consensusID : consensus_826#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 690
fasta sequence

                              [CCGCCCACGCGTCCGGGTCGGTTTGGTGTCGGGACCAAGGAAGTTCAAGTGAATTAACAGAGTGGCTCGATCGATAAGCTTGAGGAAAAAGAAACCCGTAGTGTAGATTGTCATGCAAGTGTGTTTATAGCAAGGCTTTTGTGTGTCGGTTCAACTCTTGAAAGAATGAAAGTGCCTTATTAGCCTAAGCTACTGCTGTGACGCGTCTTACTGATATTGACGACGACGACGAGTGTGCCGACAACGACGAGTGCATCCGGTCAGAAACAATCAATCCAATTGAACGAAAGCATTCGAACGTGGCAGTAGTGACGGTGGTGCAACATCCGACGAAATGAAAAGTGTGTCAGATTTTCTTAATGTTACTTATACTGGCCAGTTGCTGTTAAAGCCATTCCAAGTTTAGTTAATTGTGAGATGAAACTCTTTGCTTAAGTGATCGAAATACCTGCAGACAACGGCGCAGAAGCATTCCAACTTTAGTTAAATTATCTGCGTTATAGACAATGGCGTGCTTTGCAAAGCTCTTCGGTAGAAAGCACGGTTCGTTCAACTTGCCCGATGCTGGCACAGGTGATGGAGAAGTGGTGGCTACACGTGTAACACGGCGGCTTTACGATGATGAGCTCAATCAAATGGCACCGCCCGTGAGTCGAATCAATGGACAAATTGGATTGGAAAAGCTACCGC]

[+] EMBL BM634317             [CCGCCCACGCGTCCGGGTCGGTTTGGTGTCGGGACCAAGGAAGTTCAAGTGAATTAACAGAGTGGCTCGATCGATAAGCTTGAGGAAAAAGAAACCCGTAGTGTAGATTGTCATGCAAGTGTGTTTATAGCAAGGCTTTTGTGTGTCGGTTCAACTCTTGAAAGAATGAAAGTGCCTTATTAGCCTAAGCTACTGCTGTGACGCGTCTTACTGATATTGACGACGACGACGAGTGTGCCGACAACGACGAGTGCATCCGGTCAGAAACAATCAATCCAATTGAACGAAAGCATTCGAACGTGGCAGTAGTGACGGTGGTGCAACATCCGACGAAATGAAAAGTGTGTCAGATTTTCTTAATGTTACTTATACTGGCCAGTTGCTGTTAAAGCCATTCCAAGTTTAGTTAATTGTGAGATGAAACTCTTTGCTTAAGTGATCGAAATACCTGCAGACAACGGCGCAGAAGCATTCCAACTTTAGTTAAATTATCTGCGTTATAGACAATGGCGTGCTTTGCAAAGCTCTTCGGTAGAAAGCACGGTTCGTTCAACTTGCCCGATGCTGGCACAGGTGATGGAGAAGTGGTGGCTACACGTGTAACACGGCGGCTTTACGATGATGAGCTCAATCAAATGGCACCGCCCGTGAGTCGAATCAATGGACAAATTGGATTGGAAAAGCTACCGC]




>consensus_826#0
CCGCCCACGCGTCCGGGTCGGTTTGGTGTCGGGACCAAGGAAGTTCAAGTGAATTAACAG
AGTGGCTCGATCGATAAGCTTGAGGAAAAAGAAACCCGTAGTGTAGATTGTCATGCAAGT
GTGTTTATAGCAAGGCTTTTGTGTGTCGGTTCAACTCTTGAAAGAATGAAAGTGCCTTAT
TAGCCTAAGCTACTGCTGTGACGCGTCTTACTGATATTGACGACGACGACGAGTGTGCCG
ACAACGACGAGTGCATCCGGTCAGAAACAATCAATCCAATTGAACGAAAGCATTCGAACG
TGGCAGTAGTGACGGTGGTGCAACATCCGACGAAATGAAAAGTGTGTCAGATTTTCTTAA
TGTTACTTATACTGGCCAGTTGCTGTTAAAGCCATTCCAAGTTTAGTTAATTGTGAGATG
AAACTCTTTGCTTAAGTGATCGAAATACCTGCAGACAACGGCGCAGAAGCATTCCAACTT
TAGTTAAATTATCTGCGTTATAGACAATGGCGTGCTTTGCAAAGCTCTTCGGTAGAAAGC
ACGGTTCGTTCAACTTGCCCGATGCTGGCACAGGTGATGGAGAAGTGGTGGCTACACGTG
TAACACGGCGGCTTTACGATGATGAGCTCAATCAAATGGCACCGCCCGTGAGTCGAATCA
ATGGACAAATTGGATTGGAAAAGCTACCGC

consensusID : consensus_826#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 617
fasta sequence

                              [CCGGGTAAGATTCGGTCGGTTTGGTGTCGGGACCAAGGAAGTTCAAGTGAATTAACAGAGTGGCTCGATCGATAAGCTTGAGGAAAAAGAAACCCGTAGTGTAGATTGTCATGCAAGTGTGTTTATAGCAAGGCTTTTGTGTGTCGGTTCAACTCTTGAAAGAATGAAAGTGCCTTATTAGCCTAAGCTACTGCTGTGACGCGTCTTACTGATATTGACGACGACGACGAGTGTGCCGACAACGACGAGTGCATCCGGTCAGAAACAATCAATCCAATTGAACGAAAGCATTCGAACGTGGCAGTAGTGACGGTGGTGCAACATCCGACGAAATGAAAAGTGTGTCAGATTTTCTTAATGTTACTTATACTGGCCAGTTGCTGTTAAAGCCATTCCAAGTTTAGTTAATTGTGAGATGAAACTCTTTGCTTAAGTGATCGAAATACCTGCAGACAACGGCGCAGAAGCATTCCAACTTTAGTTAAATTATCTGCGTTATAGACAATGGCGTGCTTTGCAAAGCTCTTCGGTAGAAAGCACGGTTCGTTCAACTTGCCCGATGCTGGCACAGGTGATGGAGAAGTGGTGGCTACACGTGTAACACGGCGGCTTTACGA]

[+] EMBL BM617082             [CCGGGTAAGATTCGGTCGGTTTGGTGTCGGGACCAAGGAAGTTCAAGTGAATTAACAGAGTGGCTCGATCGATAAGCTTGAGGAAAAAGAAACCCGTAGTGTAGATTGTCATGCAAGTGTGTTTATAGCAAGGCTTTTGTGTGTCGGTTCAACTCTTGAAAGAATGAAAGTGCCTTATTAGCCTAAGCTACTGCTGTGACGCGTCTTACTGATATTGACGACGACGACGAGTGTGCCGACAACGACGAGTGCATCCGGTCAGAAACAATCAATCCAATTGAACGAAAGCATTCGAACGTGGCAGTAGTGACGGTGGTGCAACATCCGACGAAATGAAAAGTGTGTCAGATTTTCTTAATGTTACTTATACTGGCCAGTTGCTGTTAAAGCCATTCCAAGTTTAGTTAATTGTGAGATGAAACTCTTTGCTTAAGTGATCGAAATACCTGCAGACAACGGCGCAGAAGCATTCCAACTTTAGTTAAATTATCTGCGTTATAGACAATGGCGTGCTTTGCAAAGCTCTTCGGTAGAAAGCACGGTTCGTTCAACTTGCCCGATGCTGGCACAGGTGATGGAGAAGTGGTGGCTACACGTGTAACACGGCGGCTTTACGA]




>consensus_826#1
CCGGGTAAGATTCGGTCGGTTTGGTGTCGGGACCAAGGAAGTTCAAGTGAATTAACAGAG
TGGCTCGATCGATAAGCTTGAGGAAAAAGAAACCCGTAGTGTAGATTGTCATGCAAGTGT
GTTTATAGCAAGGCTTTTGTGTGTCGGTTCAACTCTTGAAAGAATGAAAGTGCCTTATTA
GCCTAAGCTACTGCTGTGACGCGTCTTACTGATATTGACGACGACGACGAGTGTGCCGAC
AACGACGAGTGCATCCGGTCAGAAACAATCAATCCAATTGAACGAAAGCATTCGAACGTG
GCAGTAGTGACGGTGGTGCAACATCCGACGAAATGAAAAGTGTGTCAGATTTTCTTAATG
TTACTTATACTGGCCAGTTGCTGTTAAAGCCATTCCAAGTTTAGTTAATTGTGAGATGAA
ACTCTTTGCTTAAGTGATCGAAATACCTGCAGACAACGGCGCAGAAGCATTCCAACTTTA
GTTAAATTATCTGCGTTATAGACAATGGCGTGCTTTGCAAAGCTCTTCGGTAGAAAGCAC
GGTTCGTTCAACTTGCCCGATGCTGGCACAGGTGATGGAGAAGTGGTGGCTACACGTGTA
ACACGGCGGCTTTACGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_826#0      CCGCCCACGCGTCCGGGTCGGTTTGGTGTCGGGACCAAGGAAGTTCAAGTGAATTAACAG 60
consensus_826#1      CCGGGTAAGATTC--GGTCGGTTTGGTGTCGGGACCAAGGAAGTTCAAGTGAATTAACAG 58
                     ***   * *  **  *********************************************

consensus_826#0      AGTGGCTCGATCGATAAGCTTGAGGAAAAAGAAACCCGTAGTGTAGATTGTCATGCAAGT 120
consensus_826#1      AGTGGCTCGATCGATAAGCTTGAGGAAAAAGAAACCCGTAGTGTAGATTGTCATGCAAGT 118
                     ************************************************************

consensus_826#0      GTGTTTATAGCAAGGCTTTTGTGTGTCGGTTCAACTCTTGAAAGAATGAAAGTGCCTTAT 180
consensus_826#1      GTGTTTATAGCAAGGCTTTTGTGTGTCGGTTCAACTCTTGAAAGAATGAAAGTGCCTTAT 178
                     ************************************************************

consensus_826#0      TAGCCTAAGCTACTGCTGTGACGCGTCTTACTGATATTGACGACGACGACGAGTGTGCCG 240
consensus_826#1      TAGCCTAAGCTACTGCTGTGACGCGTCTTACTGATATTGACGACGACGACGAGTGTGCCG 238
                     ************************************************************

consensus_826#0      ACAACGACGAGTGCATCCGGTCAGAAACAATCAATCCAATTGAACGAAAGCATTCGAACG 300
consensus_826#1      ACAACGACGAGTGCATCCGGTCAGAAACAATCAATCCAATTGAACGAAAGCATTCGAACG 298
                     ************************************************************

consensus_826#0      TGGCAGTAGTGACGGTGGTGCAACATCCGACGAAATGAAAAGTGTGTCAGATTTTCTTAA 360
consensus_826#1      TGGCAGTAGTGACGGTGGTGCAACATCCGACGAAATGAAAAGTGTGTCAGATTTTCTTAA 358
                     ************************************************************

consensus_826#0      TGTTACTTATACTGGCCAGTTGCTGTTAAAGCCATTCCAAGTTTAGTTAATTGTGAGATG 420
consensus_826#1      TGTTACTTATACTGGCCAGTTGCTGTTAAAGCCATTCCAAGTTTAGTTAATTGTGAGATG 418
                     ************************************************************

consensus_826#0      AAACTCTTTGCTTAAGTGATCGAAATACCTGCAGACAACGGCGCAGAAGCATTCCAACTT 480
consensus_826#1      AAACTCTTTGCTTAAGTGATCGAAATACCTGCAGACAACGGCGCAGAAGCATTCCAACTT 478
                     ************************************************************

consensus_826#0      TAGTTAAATTATCTGCGTTATAGACAATGGCGTGCTTTGCAAAGCTCTTCGGTAGAAAGC 540
consensus_826#1      TAGTTAAATTATCTGCGTTATAGACAATGGCGTGCTTTGCAAAGCTCTTCGGTAGAAAGC 538
                     ************************************************************

consensus_826#0      ACGGTTCGTTCAACTTGCCCGATGCTGGCACAGGTGATGGAGAAGTGGTGGCTACACGTG 600
consensus_826#1      ACGGTTCGTTCAACTTGCCCGATGCTGGCACAGGTGATGGAGAAGTGGTGGCTACACGTG 598
                     ************************************************************

consensus_826#0      TAACACGGCGGCTTTACGATGATGAGCTCAATCAAATGGCACCGCCCGTGAGTCGAATCA 660
consensus_826#1      TAACACGGCGGCTTTACGA----------------------------------------- 617
                     *******************                                         

consensus_826#0      ATGGACAAATTGGATTGGAAAAGCTACCGC 690
consensus_826#1      ------------------------------