cluster # 8269

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Anopheles gambiae
cluster # 8269 cluster # 8269 Sequences # 9 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8269#0 length = 734 sequences # 8

consensus_8269#1 length = 526 sequences # 1

consensusID : consensus_8269#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 734
fasta sequence

                              [CCGGCAGCCACAGAGCCAGGCAGGAGAAATTTGCCGCGAGGAAGGAAAAGAAAGCCGCGAACCGAATCGGCAATGTCGAGCACGGAAGATTTCTACCTGCGCTACTATGTGGGCCACAAGGGCAAGTTCGGGCACGAGTTTCTGGAGTTCGAGTTCCGGCCGGACGGGAAGCTGCGGTACGCCAACAACTCCAACTACAAAAACGACACCATGATCCGGAAGGAGGCGTACGTGCACCAGGCGGTGATGGAGGAGCTGAAGCGCATCATACTCGACTCGGAAATTATGGCGGAAGACGATTCGCTGTGGCCACCGCCGGATCGCGTCGGGCGGCAGGAGTTGGAAATCGTGATAGGCGACGAGCACATTTCGTTCACCACGTCC-AAGACGGGCTCGCTGGTGGACGTCAACCAGTCCAAAGATCCGGAAGGCCTGCGTGGCTTCTACTACCTCGTGCAGGATCTAAAGTGTTTGGTGTTTTCGCTCATCGGACTGCACTTCAAAATCAAACCCATCTAAGCAAGCCGGTCGCCACCCCGCCCCCCACACACAAACAAACAGACACACACACACGGTTTTGGTGGAATAACATGATAATATTTTCATTTTATTTACTAAAAAAAAGATTCTCTATCGGCGTGACGTGAAACCGCTCTTTGTAAGAATATAGAATAACAATAAAAACATCGTCCAGCGGAAGCTTTGGAACCATAAAAAACAAAAAAAAAAAAAAA]

[+] EMBL BM606305             [CCGGCAGCCACAGAGCCAGGCAGGAGAAATTTGCCGCGAGGAAGGAAAAGAAAGCCGCGAACCGAATCGGCAATGTCGAGCACGGAAGATTTCTACCTGCGCTACTATGTGGGCCACAAGGGCAAGTTCGGGCACGAGTTTCTGGAGTTCGAGTTCCGGCCGGACGGGAAGCTGCGGTACGCCAACAACTCCAACTACAAAAACGACACCATGATCCGGAAGGAGGCGTACGTGCACCAGGCGGTGATGGAGGAGCTGAAGCGCATCATACTCGACTCGGAAATTATGGCGGAAGACGATTCGCTGTGGCCACCGCCGGATCGCGTCGGGCGGCAGGAGTTGGAAATCGTGATAGGCGACGAGCACATTTCGTTCACCACGTCC AAGACGGGCTCGCTGGTGGACGTCAACCAGTCCAAAGATCCGGAAGGCCTGCGTGGCTTCTACTACCTCGTGCAGGATCTAAAGTGTTTGGTGTTTTCGCTCATCGGACTGCACTTCAAAATCAAACCCATCTAAGCTAGCCGGTCGCCACCCCGCCCCCCACACACAAACAAACAGACACACACACACGGTTTTGGTGGAATAACATGATAATATTTTCATTTTATTTACT AAAAAAAGATTCTCTATCGGCGTGACGTGAAACCGCTCTTTGTAAGAATATAGAATAACAAT                                                       ]
[+] EMBL BM643406             [     ccgtACAGAGCCAGGCAGGAGAAATTTGCCGCGAGGAAGGAATAGAAAGCCGCGAACCGAATCGGCAATGTCGAGCACGGAAGATTTCTACCTGCGCTACTATGTGGGCCACAAGGGCAAGTTCGGGCACGAGTTTCTGGAGTTCGAGTTCCGGCCGGACGGGAAGCTGCGGTACGCCAACAACTCCAACTACAAAAACGACACCATGATCCGGAAGGAGGCGTACGTGCACCAGGCGGTGATGGAGGAGCTGAAGCGCATCATACTCGACTCGGAAATTATGGCGGAAGACGATTCGCTGTGGACACCGCCGGATCGCGTCGGGCGGCAGGAGTTGGAAATCGTGATAGGCGACGAGCACATTTCGTTCACCACGTCC AAGACGGGCTCGCTGGTGGACGTCAACCAGTCCAAAGATCCGGAAGGCCTGCGTGGCTTCTACTACCTCGTGCAGGATCTAAAGTGTTTGGTGTTTTCGCTCATCGGACTGCACTTCAAAATCAAACCCATCTAAGCAAGCCGGTCGCCACCCCGCCCCCCACACACAAACAAATAGACACACACACATGGTTTTGGTGGAAT                                                                                                                                                   ]
[+] EMBL BM614138             [                         ccgATTTGCCGCGAGGAAGGAAAAGAAAGCCGCGAACCGAATCGGCAATGTCGAGCACGGAAGATTTCTACCTGCGCTACTATGTGGGCCACAAGGGCAAGTTCGGGCACGAGTTTCTGGAGTTCGAGTTCCGGCCGGACGGGAAGCTGCGGTACGCCAACAACTCCAACTACAAAAACGACACCATGATCCGGAAGGAGGCGTACGTGCACCAGGCGGTGATGGAGGAGCTGAAGCGCATCATACTCGACTCGGAAATTATGGCGGAAGACGATTCGCTGTGGCCACCGCCGGATCGCGTCGGGCGGCAGGAGTTGGAAATCGTGATAGGCGACGAGCACATTTCGTTCACCACGTCCAAAGACGGGCTCGCTGGTGGACGTCAACCAGTCCAAAGATCCGGAAGG                                                                                                                                                                                                                                                                                                               ]
[+] EMBL AGA282219            [                                                                  TCGGCAATGTCGAGCACGGCAGATTTCTACCTGCGCTACTATGTGGGCCACAAGGGCAAGTTCGGGCACGAGTTTCTGGAGTTCGAGTTCCGGCCGGACGGGAAGCTGCGGTACGCCAACAACTCCAACTACAAAAACGACACCATGATCCGGAAGGAGGCGTACGTGCACCACGCGGTGATGGAGGAGCTGAAGCGCATCATACTCGACTCGGAAATTATGGCGGAAGACGATTCGCTGTGGCCACCGCCGGATCGCGTCGGGCGGCAGGAGTTGGAAATCGTGATAGGCGACGAGCACATTTCGTTCACCACGTCC AAGACGGGCTCGCTGGTGGACGTCAACCAGTCC                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL AGA285311            [                                                                       AATGTCGAGCACGGAAGATTTCTACCTGCGCTACTATGTGGGCCACAAGGGCAAGTTCGGGCACGAGTTTCTGGAGTTCGAGTTCCGGCCGGACGGGAAGCTGCGGTACGCCAACAACTCCAACTACAAAAACGACACCATGATCCGGAAGGAGGCGTACGTGCACCAAGCGGTGATGGAGGAGCTGAAGCGCATCATACTCGACTCGGAAATTATGGCGGAAGACGATTCGCTGTGGCC                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[-] EMBL AGA281463            [                                                                                                                                                                                                                                GGCGTACGTGCACCAGGCGGTGATGGAGGAGCTGAAGCGCATCATACTCGACTCGGAAATTATGGCGGAAGACGATTCGCTGTGGCCACCGCCGGATCGCGTCGGGCGGCAGGAGTTGGAAATCGTGATAGGCGACGAGCACATTTCGTTCACCACGTCC AAGACGGGCTCGCTGGTGGACGTCAACCAGTCCAAAGATCCGGAAGGCCTGCGTGGCTTCTACTACCTCGTGCAGGATCTAAAGTGTTTGGTGTTTTCGCTCATCGGACTGCACTTCAAAATCAAACCCATCTAAGCAAGCCGGTCGCCACCCCGCCCCCCACACACAAACAAACAGACACACACACACGGTTTTGGTTGAATAACATGATAATATTTTCATTTTATTTACTAAAAAAAAGATTCTCTATCGGCGTGACGTGAAACCGCTCTTTGTAAGAATATAGAATAACAATAAAAACATCGTCCAGCGGAAGCTTTGGAACCATAAAAAACAAAAAAAAAAAAAAA]
[-] EMBL AGA284016            [                                                                                                                                                                                                                                                                                                                                         GCGGCAGGAGTTGGAAATCGTGATAGGCGACGAGCACATTTCGTTCACCACGTCC AAGACGGGCTCGCTGGTGGACGTCAACCAGTCCAAAGATCCGGAAGGCCTGCGTGGCTTCTACT        CAGGATCTAAAGTGTTTGGTGTTTTCGCTCATCGGACTGCACTTCAAAATCAAACCCATCTAAGCAAGCCGGTCGCCACCCCGCCCCCCACACACAAACAAATAGACACACACACATGGTTTTGGTGGAATAACATGATAATATTTTCATTTTATTTACTAAAAAAAAGATTCTCTATCGGCGTGACGTGAAACCGCTCTTTGTAAGAATATAGAATAACAATAAAAACATCGTCCAGCGGAAGCTTTGGAACCATAAAAAA                ]
[-] EMBL AGA280516            [                                                                                                                                                                                                                                                                                                                                                                          GCACATTTCGTTCACCACGTCC AAGACGGGCTCGCTGGTGGACGTCAACCAGTCCAAAGATCCGGAAGGCCTGCGTGGCTTCTACT        CAGGATCTAAAGTGTTTGGTGTTTTCGCTCATCGGACTGCACTTCAAAATCAAACCCATCTAAGCAAGCCGGTCGCCACCCCGCCCCCCACACACAAACAAACAGACACACACACACGGTTTTGGTTGAATAACATGATAATATTTTCATTTTATTTACTAAAAAAAAGATTCTCTATCGGCGTGACGTGAAACCGCTCTTTGTAAGAATATAGAATAACAATAAAAACATCGTCCAGCGGAAGCTTTGGAACCCTCCAAAAAAAA            ]




>consensus_8269#0
CCGGCAGCCACAGAGCCAGGCAGGAGAAATTTGCCGCGAGGAAGGAAAAGAAAGCCGCGA
ACCGAATCGGCAATGTCGAGCACGGAAGATTTCTACCTGCGCTACTATGTGGGCCACAAG
GGCAAGTTCGGGCACGAGTTTCTGGAGTTCGAGTTCCGGCCGGACGGGAAGCTGCGGTAC
GCCAACAACTCCAACTACAAAAACGACACCATGATCCGGAAGGAGGCGTACGTGCACCAG
GCGGTGATGGAGGAGCTGAAGCGCATCATACTCGACTCGGAAATTATGGCGGAAGACGAT
TCGCTGTGGCCACCGCCGGATCGCGTCGGGCGGCAGGAGTTGGAAATCGTGATAGGCGAC
GAGCACATTTCGTTCACCACGTCCAAGACGGGCTCGCTGGTGGACGTCAACCAGTCCAAA
GATCCGGAAGGCCTGCGTGGCTTCTACTACCTCGTGCAGGATCTAAAGTGTTTGGTGTTT
TCGCTCATCGGACTGCACTTCAAAATCAAACCCATCTAAGCAAGCCGGTCGCCACCCCGC
CCCCCACACACAAACAAACAGACACACACACACGGTTTTGGTGGAATAACATGATAATAT
TTTCATTTTATTTACTAAAAAAAAGATTCTCTATCGGCGTGACGTGAAACCGCTCTTTGT
AAGAATATAGAATAACAATAAAAACATCGTCCAGCGGAAGCTTTGGAACCATAAAAAACA
AAAAAAAAAAAAAA

consensusID : consensus_8269#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 526
fasta sequence

                              [AAAAGACAANACCANNAAANGACNANGCAAGGAAGAAATAAAGCCGCGAGGAAGGAAAAGAAAGCCGCGAACCGAATCGGCAGTGTCGAGCGCGGAAGATTTCTACCTGCGCTACTACGTGGGCCACAAGGGCAAGTTCGGGCACGAGTTTCTGGAGTTCGAGTTCCGGCCGGACGGGAAGCTGCGGTACGCCAACAACTCCAACTACAAAAACGACACCATGATCCGGAAGGAGGCGTACGTGCACCAGGCGGTGATGGAGGAGCTGAAGCGCATCATACTCGACTCGGAAATTATGGCGGAAGACGATTCGCTGTGGCCACCGCCGGATCGCGTCGGGCGGCAGGAGTTGGAAATCGTGATAGGCGACGAGCACATTNTCGTTCACCACGTCCAAGACGGGCTCGCTGGTGGACGTCAACCAGTCCAAAGATCCCNGGGAGGCCTGCGTGGCTTTCTACTACCTCGTGCAGGATCTAAAGTGTTTGGTGTNNCGCCTNCATCGGACTGCACTTTCAAAATCGAA]

[+] EMBL CF541484             [AAAAGACAANACCANNAAANGACNANGCAAGGAAGAAATAAAGCCGCGAGGAAGGAAAAGAAAGCCGCGAACCGAATCGGCAGTGTCGAGCGCGGAAGATTTCTACCTGCGCTACTACGTGGGCCACAAGGGCAAGTTCGGGCACGAGTTTCTGGAGTTCGAGTTCCGGCCGGACGGGAAGCTGCGGTACGCCAACAACTCCAACTACAAAAACGACACCATGATCCGGAAGGAGGCGTACGTGCACCAGGCGGTGATGGAGGAGCTGAAGCGCATCATACTCGACTCGGAAATTATGGCGGAAGACGATTCGCTGTGGCCACCGCCGGATCGCGTCGGGCGGCAGGAGTTGGAAATCGTGATAGGCGACGAGCACATTNTCGTTCACCACGTCCAAGACGGGCTCGCTGGTGGACGTCAACCAGTCCAAAGATCCCNGGGAGGCCTGCGTGGCTTTCTACTACCTCGTGCAGGATCTAAAGTGTTTGGTGTNNCGCCTNCATCGGACTGCACTTTCAAAATCGAA]




>consensus_8269#1
AAAAGACAANACCANNAAANGACNANGCAAGGAAGAAATAAAGCCGCGAGGAAGGAAAAG
AAAGCCGCGAACCGAATCGGCAGTGTCGAGCGCGGAAGATTTCTACCTGCGCTACTACGT
GGGCCACAAGGGCAAGTTCGGGCACGAGTTTCTGGAGTTCGAGTTCCGGCCGGACGGGAA
GCTGCGGTACGCCAACAACTCCAACTACAAAAACGACACCATGATCCGGAAGGAGGCGTA
CGTGCACCAGGCGGTGATGGAGGAGCTGAAGCGCATCATACTCGACTCGGAAATTATGGC
GGAAGACGATTCGCTGTGGCCACCGCCGGATCGCGTCGGGCGGCAGGAGTTGGAAATCGT
GATAGGCGACGAGCACATTNTCGTTCACCACGTCCAAGACGGGCTCGCTGGTGGACGTCA
ACCAGTCCAAAGATCCCNGGGAGGCCTGCGTGGCTTTCTACTACCTCGTGCAGGATCTAA
AGTGTTTGGTGTNNCGCCTNCATCGGACTGCACTTTCAAAATCGAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8269#0      -------CCGGCAGCCACAGAGCCAGGCAGGAGAAATTT---GCCGCGAGGAAGGAAAAG 50
consensus_8269#1      AAAAGACAANACCANNAAANGACNANGCAAGGAAGAAATAAAGCCGCGAGGAAGGAAAAG 60
                                 *    * *   * * *** *  * *  *   ******************

consensus_8269#0      AAAGCCGCGAACCGAATCGGCAATGTCGAGCACGGAAGATTTCTACCTGCGCTACTATGT 110
consensus_8269#1      AAAGCCGCGAACCGAATCGGCAGTGTCGAGCGCGGAAGATTTCTACCTGCGCTACTACGT 120
                      ********************** ******** ************************* **

consensus_8269#0      GGGCCACAAGGGCAAGTTCGGGCACGAGTTTCTGGAGTTCGAGTTCCGGCCGGACGGGAA 170
consensus_8269#1      GGGCCACAAGGGCAAGTTCGGGCACGAGTTTCTGGAGTTCGAGTTCCGGCCGGACGGGAA 180
                      ************************************************************

consensus_8269#0      GCTGCGGTACGCCAACAACTCCAACTACAAAAACGACACCATGATCCGGAAGGAGGCGTA 230
consensus_8269#1      GCTGCGGTACGCCAACAACTCCAACTACAAAAACGACACCATGATCCGGAAGGAGGCGTA 240
                      ************************************************************

consensus_8269#0      CGTGCACCAGGCGGTGATGGAGGAGCTGAAGCGCATCATACTCGACTCGGAAATTATGGC 290
consensus_8269#1      CGTGCACCAGGCGGTGATGGAGGAGCTGAAGCGCATCATACTCGACTCGGAAATTATGGC 300
                      ************************************************************

consensus_8269#0      GGAAGACGATTCGCTGTGGCCACCGCCGGATCGCGTCGGGCGGCAGGAGTTGGAAATCGT 350
consensus_8269#1      GGAAGACGATTCGCTGTGGCCACCGCCGGATCGCGTCGGGCGGCAGGAGTTGGAAATCGT 360
                      ************************************************************

consensus_8269#0      GATAGGCGACGAGCACATTT-CGTTCACCACGTCCAAGACGGGCTCGCTGGTGGACGTCA 409
consensus_8269#1      GATAGGCGACGAGCACATTNTCGTTCACCACGTCCAAGACGGGCTCGCTGGTGGACGTCA 420
                      *******************  ***************************************

consensus_8269#0      ACCAGTCCAAAGATCC--GGAAGGCCTGCGTGGCTT-CTACTACCTCGTGCAGGATCTAA 466
consensus_8269#1      ACCAGTCCAAAGATCCCNGGGAGGCCTGCGTGGCTTTCTACTACCTCGTGCAGGATCTAA 480
                      ****************  ** *************** ***********************

consensus_8269#0      AGTGTTTGGTGTTTT-CGCTCATCGGACTGCACTT-CAAAATCAAACCCATCTAAGCAAG 524
consensus_8269#1      AGTGTTTGGTGTNNCGCCTNCATCGGACTGCACTTTCAAAATCGAA-------------- 526
                      ************    *   *************** ******* **              

consensus_8269#0      CCGGTCGCCACCCCGCCCCCCACACACAAACAAACAGACACACACACACGGTTTTGGTGG 584
consensus_8269#1      ------------------------------------------------------------
                                                                                  

consensus_8269#0      AATAACATGATAATATTTTCATTTTATTTACTAAAAAAAAGATTCTCTATCGGCGTGACG 644
consensus_8269#1      ------------------------------------------------------------
                                                                                  

consensus_8269#0      TGAAACCGCTCTTTGTAAGAATATAGAATAACAATAAAAACATCGTCCAGCGGAAGCTTT 704
consensus_8269#1      ------------------------------------------------------------
                                                                                  

consensus_8269#0      GGAACCATAAAAAACAAAAAAAAAAAAAAA 734
consensus_8269#1      ------------------------------