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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8275#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 966 fasta sequence
[CCTGCAGCTCGGGCACATGTGGCCTTTTTTTTTTTTTTTTTAGTTTCTTCGCGTACACATATCGCGTATGTTTGTATATTTTCTTCCTTCACATTAAACTGCATTGGTTTACAACGATTCTGATGGTGGCAATCTTGTGCAACGCAG-CCT-TGGTGATAGCATCTTTAAGAACCATTGATGTTGAAATTGAAGCTCTTCATCAAACACCATCACCACACCAAATTTGTTCCCCGTCAAGGCAAAACTTCTTCCGATTTAATAAGATTAAGCCTTTGCCTTCGCCTTTGCCGGAGCCTTGGTGGCCGTGGTTGCCTTTTTCGCCTTGGCTGCAGCCCTGGCTGCGTA-TTTTCTTCCTTACGGGCGGCCTTGGC-GGCAACGTACAGTTCC-TTGCGCTTGCGCTTGCCAAGCTTCGGCGGAACGGCGTTCACCACTGGTTTGCTGTACTTCTTCTCGAATTCCGATGTGAGATAACCATACTGCTTCAATACAGCATTCTGCG-ATTCAATCCTCTTGGCCACAACGGCACGAGCACTCCATGTGATTTTCTTCAGCTTCTTCTTGTGCATGTAAGCAATGCGAGCCTTGATCTTGCGCTTGGCTTCCAGGTTGTTCACGACGTCTCGGTACTTCCAGCCGACTTCATGAGCAACGCGATCGACCGTACAGTACTTTCGGTCTGGGCGCAGGCACAGCTGACGCAGGGCGATCGGAACGCACACTCGCTTCATCTTGTCATATGGCGGAGGAATGCCCTCATACACCTTCAAGCGACGGAGCGCATTCGCACCACGACCACCGAGTTACCAGACAGGATCTGCTTGGCGACGACCGAGGCCAGTCGACCAAGCAAGTGTCCACGTCCGTCAATTAAAATTGGCTTCTTCGTGCGTACCAT-CACTTTCGCAAACACCAACAAAAAAAGCCAGTTGGCCAACAGTTCTCGAGGAATTCCGCAGCTCCCCGCAG]
[-] EMBL CNS09LMQ [CCTGCAGCTCGGGCACATGTGGCCTTTTTTTTTTTTTTTTTAGTTTCTTCGCGTACACATATCGCGTATGTTTGTATATTTTCTTCCTTCACATTAAACTGCATTGGTTTACAACGATTCTGATGGTGGCAATCTTGTGCAACGCAG CCT TGGTGATAGCATCTTTAAGAACCATTGATGTTGAAATTGAAGCTCTTCATCAAACACCATCACCACACCAAATTTGTTCCCCGTCAAGGCAAAACTTCTTCCGATTTAATAAGATTAAGCCTTTGCCTTCGCCTTTGCCGGAGCCTTGGTGGCCGTGGTTGCCTTTTTCGCCTTGGCTGCAGCCCTGGCTGCGTA TTTTCTTCCTTACGGGCGGCCTTGGC GGCAACGTACAGTTCCTTTGCGCTTGCGCTTGCCAAGCTTCGGCGGAACGGCGTTCACCACTGGTTTGCTGTACTTCTTCTCGAATTCCGATGTGAGATAACCATACTGCTTCAATACAGCATTCTGCG ATTCAATCCTCTTGGCCACAACGGCACGAGCACTCCATGTGATTTTCTTCAGCTTCTTCTTGTGCATGTAAGCAATGCGAGCCTTGATCTTGCGCTTGGCTTCCAGGTTGTTCACGACGTCTCGGTACTTCCAGCCGACTTCATGAGCAACGCGATCGACCGTACAGTACTTTCGGTCTGGGCGCAGGCACAG TGACGCAGGGCGATCGGAACGCACACTCGCTTCATCTTGTCATATGGCGGAGGAATGCCCTCATACACCTTCAAGCGACGGAGCGCATTCGCACCACGACCACCGAGTTACCAGACAGGATCTGCTTGGCGACGACCGAGGCCAGTCGACCAAGCAAGTGTCCACGTCCGTCAATTAAAATTGACTTCTTCGTGCGTACCAT CACTTTCGC ]
[-] EMBL CNS095XR [ AGCTCGGGCACATGTGGCC TTTTTTTTTTTTTTTAGTTTCTTCGCGTACACATATCGCGTATGTTTGTATATTTTCTTCCTTCACATTAAACTGCATTGGTTTACAACGATTCTGATGGTGGCAATCTTGTGCAACGCAG CCT TGGTGATAGCATCTTTAAGAACCATTGATGTTGAAATTGAAGCTCTTCATCAAACACCATCACCACACCAAATTTGTTCCCCGTCAAGGCAAAACTTCTTCCGATTTAATAAGATTAAGCCTTTGCCTTCGCCTTTGCCGGAGCCTTGGTGGCCGTGGTTGCCTTTTTCGCCTTGGCTGCAGCCCTGGCTGCGTA TTTTCTTCCTTACGGGCGGCCTTGGC GGCAACGTACAGTTCC TTTGGCTTGCGCTTGCCAAGCTTCAGCGGAACGGCGTTCACCACTGGTTTGCTGTACTTCTTCTCGAATTCCGATGTGAGATAACCATACTGCTTCAATACAGCATTCTGCG ATTCAATCCTCTTGGCCACAACGGCACGAGCACTCCATGTGATTTTCTTCAGCTTCTTCTTGTGCATGTAAGCAATGCGAGCCTTGATCTTGCGCTTGGCTTCCAGGTTGTTCACGACGTCTCGGTACTTCCAGCCGACTTCATGAGCAACGCGATCGACCGTACAGTACTTTCGGTCTGGGCGCAGGCACA CTGACGCAGGGCGATCGGAACGCACACTCGCTTCATCTTGTCATATGGCGGAGGAATGCCCTCATACACCTTCAAGCGACGGAGCGCATTCGCACCACGCCCACCGAGTTACCAGACAGGATCTGCTTGGCGACGACCGAGGCCAGTCGACCAAGCAAGTGTCCACGTCCGTCAATTAAAATTGGCTTC TCGTGCGTACCAT CACT ]
[+] EMBL CNS094YG [ TTTTTTTTAGTTTCTTCGCGTTCACATATCGCGTATGTTTGTATATTTTCTTCCTTCACATTAAACTGCATTGGTTTACAACGATTCTGATGGTGGCAATCTTGTGCAACGCAG CCT TGGTGATAG ATCTTTAAGAACCATTGATGTTGAAATTGAAGCTCTTCATCAAACACCATCACCACACCAAATTTGTTCCCCGTCAAGGCAAAACTTCTTCCGATTTAATAAGATTAAGCCTTTGCCTTCGCCTTTGCCGGAGCCTTGGTGGCCGTGGTTGCCTTTTTCGCCTTGGCTGCAGCCCTGGCTGCGTA TTTTCTTCCTTACGGGCGGCCTTGGC GGCAACGTACAGTTCC TTGCGCTTGCGCTTGCCAAGCTTCGGCGGAACGGCGTTCACCACTGGTTTGCTGTACTTCTTCTCGAATTCCGATGTGAGAAAACCATACTGCTTCAATACAGCATTCTGCGTATTCAATCCTCTTGGCCACAACGGCACGAGCACTCCATGTGATTTTCTTCAGCTTCTTCTTGTGCATGCAAGCAATGCGAGCCTTGATCTTGCGCTTGGCTTCCAGGTTGTTCACGACGTCTCGGTACTTCCAGCCGACTTCATGAGCAACGCGATCGACCGTACAGTACTTTCGGTCTGGGCGCAGGCACAGCTGACGCAGGGCGATCGGAACGCACACTCGCTTCATCTTGTCATATGGCGGAGGAATGCCCTCATACACCTTCAAGCGACGGAGCGCATTCGCACCACGACCACCGAGTTACCAGACAGGATCTGCTTGGCGACGACCGAGGCCAGTGGACCAAGCAAGTTTCCACGTCCGTCAATTAAAATTGGCTTCTTCGTGCGTTCCAT CACTTTCGCAAACACCAACAAAAAAAGCCAGTGGGCCAACAGTGCTCGAGGAATTCCGCAGCTCCCCGC ]
[+] EMBL CNS09EMC [ TAGTTTCTTCGCGTACACATATCGCGTATGTTTGTATATTTTCTTCCTTCACATTAAACTGCATTGGTTTACAACGATTCTGATGGTGGCAATCTTGTGCAACGCAG CCT TGGTGATAGCATCTTTAAGAACCATTGATGTTGAAATTGAAGCTCTTCATCAAACACCATCACCACACCAAATTTGTTCCCCGTCAAGGCAAAACTTCTTCCGATTTAATAAGATTAAGCCTTTGCCTTCGCCTTTGCCGGAGCCTTGGTGGCCGTGGTTGCCTTTTTCGCCTTGGCTGCAGCCCTGGCTGCGTA TTTTCTTCCTTACGGGCGGCCTTGGC GGCAACGTACAGTTCC TTGCGCTTGCGCTTGCCAAGCTTCGGCGGAACGGCGTTCACCACTGGTTTGCTGTACTTCTTCTCGAATTCCGATGTGAGAAAACCATACTGCTTCAATACAGCATTCTGCG ATTCAATCCTCTTGGCCACAACGGCACGAGCACTCCATGTGATTTTCTTCAGCTTCTTCTTGTGCATGTAAGCAATGCGAGCCTTGATCTTGCGCTTGGCTTCCAGGTTGTTCACGACGTCTCGGTACTTCCAGCCGACTTCATGAGCAACGCGATCGACCGTACAGTACTTTCGGTCTGGGCGCAGGCACAGCTGACGCAGGGCGATCGGAACGCACACTCGCTTCATCTTGTCATATGGCGGAGGAATGCCCTCATACACCTTCAAGCGACGGAGCGCATTCGCACCACGACCACCGAGTTACCAGAAAGGATCTGCTTGG ]
[+] EMBL CNS09LMR [ TCGCGTATGTTTGTATATTTTCTTCCTTCACATTAAACTGCATTGGTTTACAACGATTCTGATGGTGGCAATCTTGTGCAACGCAG CCT TGGTGATAGCATCTTTAAGAACCATTGATGTTGAAATTGAAGCTCTTCATCAAACACCATCACCACACCAAATTTGTTCCCCGTCAAGGCAAAACTTCTTCCGATTTAATAAGATTAAGCCTTTGCCTTCGCCTTTGCCGGAGCCTTGGTGGCCGTGGTTGCCTTTTTCGCCTTGGCTGCAGCCCTGGCTGCGTA TTTTCTTCCTTACGGGCGGCCTTGGC GGCAACGTACAGTTCC TTGCGCTTGCGCTTGCCAAGCTTCGGCGGAACGGCGTTCACCACTGGTTTGCTGTACTTCTTCTCGAATTCCGATGTGAGAAAACCATACTGCTTCAATACAGCATTCTGCG ATTCAATCCTCTTGGCCACAACGGCACGAGCACTCCATGTGATTTTCTTCAGCTTCTTCTTGTGCATGTAAGCAATGCGAGCCTTGATCTTGCGCTTGGCTTCCAGGTTGTTCACGACGTCTCGGTACTTCCAGCCGACTTCATGAGCAACGCGATCGACCGTACAGTACTTTCGGTCTGGGCGCAGGCACAGCTGACGCAGGGCGATCGGAACGCACACTCGCTTCATCTTGTCATATGGCGGAGGAATGCCCTCATACACCTTCAAGCGACGGAGCGCATTCGCACCACGACCACCGAGTTACCAGACAGGATCTGCTTGGCGACGACCGAGGCCAGTTGACCAAGCAAGTTTCCACGTCCGTCAATTAAAATTGACTTCTTCGTGCGTACCAT CACTTTCGCAAACACCAACAAAAAAAGCCAGTTGGCCAACAGTTCTCGAGGAATTCCGCAGCTttttagag]
[+] EMBL CNS095XS [ GCGTATGTTTGTATATTTTCTTCCTTCACATTAAACTGCATTGGTTTACAACGATTCTGATGGTGGCAATCTTGTGCAACGCAGCCCTCTGGTGATAGCATCTTTAAGAACCATTGATGTTGAAATTGAAGCTCTTCATCAAACACCATCACCACACCAAATTTGTTCCCCGTCAAGGCAAAACTTCTTCCGATTTAATAAGATTAAGCCTTTGCCTTCGCCTTTGCCGGAGCCTTGGTGGCCGTGGTTGCCTTTTTCGCCTTGGCTGCAGCCCTGGCTGCGTA TTTTCTTCCTTACGGGCGGCCTTGGC GGCAACGTACAGTTCC TTGCGCTTGCGCTTGCCAAGCTTCAGCGGAACGGCGTTCACCACTGGTTTGCTGTACTTCTTCTCGAATTCCGATGTGAGAAAACCATACTGCTTCAATACAGCATTCTGCG ATTCAATCCTCTTGGCCACAACGGCACGAGCACTCCATGTGATTTTCTTCAGCTTCTTCTTGTGCATGTAAGCAATGCGAGCCTTGATCTTGCGCTTGGCTTCCAGGTTGTTCACGACGTCTCGGTACTTCCAGCCGACTTCATGAGCAACGCGATCGACCGTACAGTACTTTCGGTCTGGGCGCAGGCACAGCTGACGCAGGGCGATCGGAACGCACACTCGCTTCATCTTGTCATATGGCGGAGGAATGCCCTCATACACCTTCAAGCGACGGAGCGCATTCGCACCACGCCCACCGAGTTACCAGACAGGATCTGCTTGGCGACGACCGAGGCCAGTTGACCAAGCAAGTTTCCACGTCCGTCAATTAAAATTGGCTTCTTCGTGCGTACCAT CACTTTCGCAAACACCAACAAAAAAAGCCAGTTGGCCAACAGTTCT ]
[-] EMBL CNS09EMB [ CAATCTTGTGCAACGCAG CCT TGGTGATAGCATCTTTAAGAACCATTGATGTTGAAATTGAAGCTCTTCATCAAACACCATCACCACACCAAATTTGTTCCCCGTCAAGGCAAAACTTCTTCCGATTTAATAAGATTAAGCCTTTGCCTTCGCCTTTGCCGGAGCCTTGGTGGCCGTGGTTGCCTTTTTCGCCTTGGCTGCAGCCCTGGCTGCGTA TTTTCTTCCTTACGGGCGGCCTTGGC GGCAACGTACAGTTCCTTTGCG TTGCGCTTGCCAAGCTTCGGCGGAACGGCGTTCACCACTGGTTTGCTGTACTTCTTCTCGAATTCCGATGTGAGATAACCATACTGCTTCAATACAGCATTCTGCG ATTCAATCCTCTTGGCCACAACGGCACGAGCACTCCATGTGATTTTCTTCAGCTTCTTCTTGTGCATGTAAGCAATGCGAGCCTTGATCTTGCGCTTGGCTTCCAGGTTGTTCACGACGTCTCGGTACTTCCAGCCGACTTCATGAGCAACGCGATCGACCGTACAGTACTTTCGGTCTGGGCGCAGGCACAG TGACGCAGGGCGATCGGAACGCACACTCGCTTCATCTTGTCATATGGCGGAGGAATGCCCTCATACACCTTCAAGCGACGGAGCGCATTCGCACCACGACCACCGAGTTACCAGACAGGATCTGCTTGGCGACGACCGAGGCCAGTCGACCAAGCAAGTGTCCACGTCCGTCAATTAAAATTGGCTTCTTCGTGCGTACCAT CACTTTCGCAAACACCAACAAAAAA ]
[-] EMBL CNS094YF [ TGCGTATTTTTCTTCCTTACGGGCGGCCTTGGCGGGCAACGTACAGTTCCTTTGCGCTTGCGCTTGCCAAGCTTCGGCGGAACGGCGTTCACCACTGGTTTGCTGTACTTCTTCTCGAATTCCGATGTGAGATAACCATACTGCTTCAATACAGCATTCTGCG ATTCAATCCTCTTGGCCACAACGGCACGAGCACTCCATGTGATTTTCTTCAGCTTCTTCTTGTGCATGCAAGCAATGCGAGCCTTGATCTTGCGCTTGGCTTCCAGGTTGTTCACGACGTCTCGGTACTTCCAGCCGACTTCATGAGCAACGCGATCGACCGTACAGTACTTTCGGTCTGGGCGCAGGCACAG TGACGCAGGGCGATCGGAACGCACACTCGCTTCATCTTGTCATATGGCGGAGGAATGCCCTCATACACCTTCAAGCGACGGAGCGCATTCGCACCACGACCACCGAGTTACCAGACAGGATCTGCTTGGCGACGACCGAGGCCAGTCGACCAAGCAAGTGTCCACGTCCGTCAATTAAAATTGGCTTCTTCGTGCGTACCATGCACTTTCGCAAACACCAAAAAAAAA ]
consensusID : consensus_8275#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 369 fasta sequence
[TGCTGTTTAATGTCTACACTTCACACCTTTATTTGGATTATTTCATTAATATATCGCGGGTTCAAGGGCTTAATACCGGTAAACAAGGATGTTCGGTTGTGTAATGTGGATATTCGAAAACGGAAAACCATTCCGTATTGTACTCGGGAATTGGTGGAAAGTGAATGTTTCTAATGATTTCCCATCATGGAAAGCTGTACTTAACCTATAAAAAAACGAGTAGATTATTGATTATAAAAGAAAGATAAAAAAAAGAAAAAAAAATACCATTATTAGCATCTATCACGTGTCGTACGTGTGATGATACAACCGTAATAGCGCTCGACAGTATAAAAAATAATATGTGTGTGTGTGTGTGTGGATGTGTTT]
[+] EMBL BM642155 [TGCTGTTTAATGTCTACACTTCACACCTTTATTTGGATTATTTCATTAATATATCGCGGGTTCAAGGGCTTAATACCGGTAAACAAGGATGTTCGGTTGTGTAATGTGGATATTCGAAAACGGAAAACCATTCCGTATTGTACTCGGGAATTGGTGGAAAGTGAATGTTTCTAATGATTTCCCATCATGGAAAGCTGTACTTAACCTATAAAAAAACGAGTAGATTATTGATTATAAAAGAAAGATAAAAAAAAGAAAAAAAAATACCATTATTAGCATCTATCACGTGTCGTACGTGTGATGATACAACCGTAATAGCGCTCGACAGTATAAAAAATAATATGTGTGTGTGTGTGTGTGGATGTGTTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8275#0 CCTGCAGCTCGGGCACATGTGGCCTTTTTTTTTTTTTTTTTAGTTTCTTCGCGTACACAT 60
consensus_8275#1 ------------------------------------------------------------
consensus_8275#0 ATCGCGTATGTTTGTATATTTTCTTCCTTCACATTAAACTGCATTGGTTTACAACGATTC 120
consensus_8275#1 ------------------------------------------------------------
consensus_8275#0 TGATGGTGGCAATCTTGTGCAACGCAGCCTTGGTGATAGCATCTTTAAGAACCATTGATG 180
consensus_8275#1 ------------------------------------------------------------
consensus_8275#0 TTGAAATTGAAGCTCTTCATCAAACACCATCACCACACCAAATTTGTTCCCCGTCAAGGC 240
consensus_8275#1 ------------------------------------------------------------
consensus_8275#0 AAAACTTCTTCCGATTTAATAAGATTAAGCCTTTGCCTTCGCCTTTGCCGGAGCCTTGGT 300
consensus_8275#1 ------------------------------------------------------------
consensus_8275#0 GGCCGTGGTTGCCTTTTTCGCCTTGGCTGCAGCCCTGGCTGCGTATTTTCTTCCTTACGG 360
consensus_8275#1 ------------------------------------------------------------
consensus_8275#0 GCGGCCTTGGCGGCAACGTACAGTTCCTTGCGCTTGCGCTTGCCAAGCTTCGGCGGAACG 420
consensus_8275#1 ------------------------------------------------------------
consensus_8275#0 GCGTTCACCACTGGTTTGCTGTACTTCTTCTCGAATTCCGATGTGAGATAACCATACTGC 480
consensus_8275#1 ------------------------------------------------------------
consensus_8275#0 TTCAATACAGCATTCTGCGATTCAATCCTCTTGGCCACAACGGCACGAGCACTCCATGTG 540
consensus_8275#1 ------------------------------------------------------------
consensus_8275#0 ATTTTCTTCAGCTTCTTCTTGTGCATGTAAGCAATGCGAGCCTTGATCT-TGCGCTTGGC 599
consensus_8275#1 ------------------------------------TGCTGTTTAATGTCTACACTTCAC 24
* ** ** * * * *** *
consensus_8275#0 TTCCAGGTTGTTCACGACGTCTCGGTACTTCCAGCCGACTTCATGAGCAACGCGATCGAC 659
consensus_8275#1 ACCT---TTATTTGGATTATTTCATTAATATATCGCGGGTTCAAGGGCT-TAATACCGGT 80
* ** ** * ** ** * ** **** * ** * **
consensus_8275#0 CGTACAGTACTTTCGGTCTGGGCGCAGGCACAGCTGACGCAGGGCGATCGGAACGCACAC 719
consensus_8275#1 AAACAAGGATGTTCGGTTGTGTAATGTGGATATTCGAAAACGGAAAACCATTCCGTATTG 140
** * ****** * * * * ** ** * * ** *
consensus_8275#0 TCGCTTCATCTTGTCATATGGCGGAGGAATGCCCTCATACACCTTCAAGCGACGGAGCGC 779
consensus_8275#1 TACTCGGGAATTG----GTGGAAAGTGAATGTTTCTAATGATTTCCCATC-ATGGAAAGC 195
* *** *** ***** * * * * * * * *** **
consensus_8275#0 ATTCGCACCACGACCACCGAGTTACCAGACAGGATCTGCTTGGCGACGACCGAGGCCAGT 839
consensus_8275#1 ---TGTACTTAACCTATAAAAAAACGAGTAGATTATTGATTATAAAAGAAAGATAAAAAA 252
* ** * * * ** ** ** ** * ** ** *
consensus_8275#0 CGACCAAGCAAGTGTCCACGTC--CGTCAATTAAAATTGGCTTCTTCGTGCGTACCATCA 897
consensus_8275#1 AAGAAAAAAAAATACCATTATTAGCATCTATCACGTGTCGTACGTGTGATGATACAACCG 312
** ** * * * * ** ** * * * * * *** * *
consensus_8275#0 CTTTCGCAAACACCAACAAAAAAAGCCAGTTGGCCAACAGTTCTCGAGGAATTCCGCAGC 957
consensus_8275#1 TAATAGCGCTCGACAGTATAAAAAATAATATGTGTGTGTGTGTGTGTGGATGTGTTT--- 369
* ** * ** * ***** * ** ** * *** *
consensus_8275#0 TCCCCGCAG 966
consensus_8275#1 ---------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||