cluster # 8317

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Anopheles gambiae
cluster # 8317 cluster # 8317 Sequences # 10 consensus # 6

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8317#0 length = 1134 sequences # 2
consensus_8317#1 length = 975 sequences # 2
consensus_8317#2 length = 829 sequences # 1

consensus_8317#3 length = 694 sequences # 1
consensus_8317#4 length = 389 sequences # 3
consensus_8317#5 length = 267 sequences # 1

consensusID : consensus_8317#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1134
fasta sequence

                              [CCGGACGCTGGGCAGCAGACACGGGTGCGTACGGTGCGTCTGGTACGGCCCCATCATGGCTACAGCCATCGGAACCTACCGATCACGGGCAGCAACTTTGGCTTTTCCATACGCGGCGGGTTGGAGTACGGCACCGGGTTCTTCGTGTCCGCTATAGAGCGTGATTCTGAAGCTGATCGGCAGGGATTGAAGGTAGGAGATCAGATCATACGCGTCAATGGGTATCAGGTGGAGGATGCAGTACATCGCGAGCTGGCCCAATTCATTGCCAATCAGGAGCGACTGATCATGAAGGTGCGCGGGCTCGGCATCCTACCGATCAAAGAACGTACAGCCGACCCGCTAACCTGGCACGTGGTGTCGTTTGGAATGTCGCGCGACAAGCAGGACGCGCTGCTGCTGGAAGAACCGTGCGGTGGGCGCGATGTGAAGGTGATCCTCTCGGTGGCACCGCGCACCAAGCTGGGCTGCGGCATTTGCAAGGGTCCCGACTGGAAGCCAGGCATATTTGTCCAGTTCACCAAGAGAGGGAGGCGTGGGCGCGGGAGGCCGGCTTACGGCCCGGCGAATCAGATTCTGTCCTGCAATGGGCACAGCTTTGCCGAGGCCACGTTTGGCGAGGCGGTGGCCGTGATGAAGTCATCGCACGTGCTCGAGCTGGTGGTGCGCCCCAGTGCCGGGTTGGATCTGTTCCCGGGCGAATCGAGCGGCTACAACAGCTCGGCGAGCAGTGTCAACGGTGACCAGAGTCCGTGCTGGGGTGACCAGACGTCCAAGCGGCTAAGCATCGTGCGGGAAGAGTCGATCACGCACGATCGCCGTCGGCTGGCAGCGGCACCGGTCGCAACAGTACCGGAAATGCCACCAGCCAGCGATAACAAATCGGGCGTCCCTCCTCCACCGCCGCCTCAACCCCAGCAACAACCCCATCATCAGGATGAACAACAGGTTCAGCAGCAGCAGCAGCAGCAACAACAACTGACCCCGAGGGGCACACTGGCTGGAGGGGCGACACGCAGGAAGAACACCACCATCATCGAGTTCTCCGAGCGGGGCGCAATCGTGAACCCTGAAGCGAAACAGAGTGAAACGAAAACGATCATTGTCGAGGTGCACCGGAGCGCATCGGCCGGC]

[+] EMBL BM591345             [CCGGACGCTGGGCAGCAGACACGGGTGCGTACGGTGCGTCTGGTACGGCCCCATCATGGCTACAGCCATCGGAACCTACCGATCACGGGCAGCAACTTTGGCTTTTCCATACGCGGCGGGTTGGAGTACGGCACCGGGTTCTTCGTGTCCGCTATAGAGCGTGATTCTGAAGCTGATCGGCAGGGATTGAAGGTAGGAGATCAGATCATACGCGTCAATGGGTATCAGGTGGAGGATGCAGTACATCGCGAGCTGGCCCAATTCATTGCCAATCAGGAGCGACTGATCATGAAGGTGCGCGGGCTCGGCATCCTACCGATCAAAGAACGTACAGCCGACCCGCTAACCTGGCACGTGGTGTCGTTTGGAATGTCGCGCGACAAGCAGGACGCGCTGCTGCTGGAAGAACCGTGCGGTGGGCGCGATGTGAAGGTGATCCTCTCGGTGGCACCGCGCACCAAGCTGGGCTGCGGCATTTGCAAGGGTCCCGACTGGAAGCCAGGCATATTTGTCCAGTTCACCAAGAGAGGGAGGCGTGGGCGCGGGAGGCCGGCTTACGGCCCGGCGAATCAGATTCTGTCCTGCAATGGGCACAGCTTTGCCGAGGCCACGTTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL BX625698             [                                                                                                                                                                                                                                                                                                                                                                              GGAATGTCGCGCGACAAGCAGGACGCGCTGCTGCTGGAAGAACCGTGCGGTGGGCGCGATGTGAAGGTGATCCTCTCGGTGGCACCGCGCACCAAGCTGGGCTGCGGCATTTGCAAGGGTCCCGACTGGAAGCCAGGCATATTTGTCCAGTTCACCAAG GAGGGAGGCGT GGCGCGGGAGGCCGGCTTACGGCCCGGCG ATCAGATTCTGTCCTGCAATGGGCACAGCTTTGCCGAGGCCACGTTCGGCGAGGCGGTGGCCGTGATGAAGTCATCGCACGTGCTCGAGCTGGTGGTGCGCCCCAGTGCCGGGTTGGATCTGTTCCCGGGCGAATCGAGCGGCTACAACAGCTCGGCGAGCAGTGTCAACGGTGACCAGAGTCCGTGCTGGGGTGACCAGACGTCCAAGCGGCTAAGCATCGTGCGGGAAGAGTCGATCACGCACGATCGCCGTCGGCTGGCAGCGGCACCGGTCGCAACAGTACCGGAAATGCCACCAGCCAGCGATAACAAATCGGGCGTCCCTCCTCCACCGCCGCCTCAACCCCAGCAACAACCCCATCATCAGGATGAACAACAGGTTCAGCAGCAGCAGCAGCAGCAACAACAACTGACCCCGAGGGGCACACTGGCTGGAGGGGCGACACGCAGGAAGAACACCACCATCATCGAGTTCTCCGAGCGGGGCGCAATCGTGAACCCTGAAGCGAAACAGAGTGAAACGAAAACGATCATTGTCGAGGTGCACCGGAGCGCATCGGCCGGC]




>consensus_8317#0
CCGGACGCTGGGCAGCAGACACGGGTGCGTACGGTGCGTCTGGTACGGCCCCATCATGGC
TACAGCCATCGGAACCTACCGATCACGGGCAGCAACTTTGGCTTTTCCATACGCGGCGGG
TTGGAGTACGGCACCGGGTTCTTCGTGTCCGCTATAGAGCGTGATTCTGAAGCTGATCGG
CAGGGATTGAAGGTAGGAGATCAGATCATACGCGTCAATGGGTATCAGGTGGAGGATGCA
GTACATCGCGAGCTGGCCCAATTCATTGCCAATCAGGAGCGACTGATCATGAAGGTGCGC
GGGCTCGGCATCCTACCGATCAAAGAACGTACAGCCGACCCGCTAACCTGGCACGTGGTG
TCGTTTGGAATGTCGCGCGACAAGCAGGACGCGCTGCTGCTGGAAGAACCGTGCGGTGGG
CGCGATGTGAAGGTGATCCTCTCGGTGGCACCGCGCACCAAGCTGGGCTGCGGCATTTGC
AAGGGTCCCGACTGGAAGCCAGGCATATTTGTCCAGTTCACCAAGAGAGGGAGGCGTGGG
CGCGGGAGGCCGGCTTACGGCCCGGCGAATCAGATTCTGTCCTGCAATGGGCACAGCTTT
GCCGAGGCCACGTTTGGCGAGGCGGTGGCCGTGATGAAGTCATCGCACGTGCTCGAGCTG
GTGGTGCGCCCCAGTGCCGGGTTGGATCTGTTCCCGGGCGAATCGAGCGGCTACAACAGC
TCGGCGAGCAGTGTCAACGGTGACCAGAGTCCGTGCTGGGGTGACCAGACGTCCAAGCGG
CTAAGCATCGTGCGGGAAGAGTCGATCACGCACGATCGCCGTCGGCTGGCAGCGGCACCG
GTCGCAACAGTACCGGAAATGCCACCAGCCAGCGATAACAAATCGGGCGTCCCTCCTCCA
CCGCCGCCTCAACCCCAGCAACAACCCCATCATCAGGATGAACAACAGGTTCAGCAGCAG
CAGCAGCAGCAACAACAACTGACCCCGAGGGGCACACTGGCTGGAGGGGCGACACGCAGG
AAGAACACCACCATCATCGAGTTCTCCGAGCGGGGCGCAATCGTGAACCCTGAAGCGAAA
CAGAGTGAAACGAAAACGATCATTGTCGAGGTGCACCGGAGCGCATCGGCCGGC

consensusID : consensus_8317#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 975
fasta sequence

                              [CACCCCCCCATTTTTATAATCGATCGATTACACTTACTTATGACAAATACGTTACAATATGTATATGTATCTTACATATTGTATCACCACAAACAAAGAACAGAAAAATACACCTTTTAAACCATCCACGGAACCCAGTCATGTGCAGTGTGCTTGTCTTGAATGGGGGAGGAAGGTGGGTTCGCACCACCGTTCGCATCGATCGCATATTTGGTCGTTAAACATTGCAGTTTTATTTTCGCCCTATCCTATCTATTAGTCATGCCATAACGCTACGTTGCTGGAGCTTGGCGCTGTCTACTTAACGGGCCCTCCTTAGGACCACCGACGGGACCACCACCCCCGATCGCTTCCGTCACGGATCGCAGCTGTCCAAAATCGAACCGGGTCGTCTTTTTGGGCTCTTCCGTCCGACCTGCACTCGTCGCATACTCGCTGATCGTGACGGCGATCGGTTTTTGGGATTTCTTCATGGTTGGCGGTCCGGTTGCCTGCGGGCAGAAGTAGTACGAAGGGGGCCGTACCGGTGGTTGTTGCGGATTGTTCAGCTTGAACGATTCGATCGATTCCAGCTCGGCACTGTCGCCGCTTGCCTTCGCCATTTCTGACGCCGCCACTCGTCCCATCGTGCCTTTGGGCGATTTTCTTGCCCCATTTGCACCGTTGACTGCGTCCTGGATCGGCTGACCGTGGTCCGCATCATTCGTTTTGGGGGGCTGTTTCTTTAGTTCCGCGTTGTCGAATCCATTCTTGAACATACGTTTGTGCACCGCCCGGAACTCGTCCATGAGGGCGGTGTGCCGTTCGTCCGAAATGGCCATCGTTACCGGGCGCAAACGGACGTTCTTTTCCTTCAGCCGATTCTCGAGCTCGGTGAGGGCGGCAGCCGGCCCGGTGGCCGGGTCCGTCGCCCCGCCGCCCGCCGGTGCCGCTTTCTTCTGTGCCCGGCGCCGCAGCTCGCGGACGCGTGGGCGG]

[+] EMBL CNS09G4N             [CACCCCCCCATTTTTATAATCGATCGATTACACTTACTTATGACAAATACGTTACAATATGTATATGTATCTTACATATTGTATCACCACAAACAAAGAACAGAAAAATACACCTTTTAAACCATCCACGGAACCCAGTCATGTGCAGTGTGCTTGTCTTGAATGGGGGAGGAAGGTGGGTTCGCACCACCGTTCGCATCGATCGCATATTTGGTCGTTAAACATTGCAGTTTTATTTTCGCCCTATCCTATCTATTAGTCATGCCATAACGCTACGTTGCTGGAGCTTGGCGCTGTCTACTTAACGGGCCCTCCTTAGGACCACCGACGGGACCACCACCCCCGATCGCTTCCGTCACGGATCGCAGCTGTCCAAAATCGAACCGGGTCGTCTTTTTGGGCTCTTCCGTCCGACCTGCACTCGTCGCATACTCGCTGATCGTGACGGCGATCGGTTTTTGGGATTTCTTCATGGTTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL BM578315             [                                                                                                                                                                                                                                                                                           GAGCTTGGCGCTGTCTAC TAACGGGCCCTCCTTAGGACCACCGACAGGACCACCACCCCCGATCGCTTCCGTCACGGATCGCAGCTGTCCAAAATCGAACCGGGTCGTCTTTTTGGGCTCTTCCGTCCGTCCCGCACTCGTCGCATACTCGCTGATCGTGACGGCGATCGGTTTTTGGGATTTCTTCATCGTTGGCGGTCCGGTTGCCTGCGGGCAGAAGTAGTACGAAGGGGGCCGTACCGGTGGTTGTTGCGGATTGTTCAGCTTGAACGATTCGATCGATTCCAGCTCGGCACTGTCGCCGCTTGCCTTCGCCATTTCTGACGCCGCCACTCGTCCCATCGTGCCTTTGGGCGATTTTCTTGCCCCATTTGCACCGTTGACTGCGTCCTGGATCGGCTGACCGTGGTCCGCATCATTCGTTTTGGGGGGCTGTTTCTTTAGTTCCGCGTTGTCGAATCCATTCTTGAACATACGTTTGTGCACCGCCCGGAACTCGTCCATGAGGGCGGTGTGCCGTTCGTCCGAAATGGCCATCGTTACCGGGCGCAAACGGACGTTCTTTTCCTTCAGCCGATTCTCGAGCTCGGTGAGGGCGGCAGCCGGCCCGGTGGCCGGGTCCGTCGCCCCGCCGCCCGCCGGTGCCGCTTTCTTCTGTGCCCGGCGCCGCAGCTCGCGGACGCGTGGGCGG]




>consensus_8317#1
CACCCCCCCATTTTTATAATCGATCGATTACACTTACTTATGACAAATACGTTACAATAT
GTATATGTATCTTACATATTGTATCACCACAAACAAAGAACAGAAAAATACACCTTTTAA
ACCATCCACGGAACCCAGTCATGTGCAGTGTGCTTGTCTTGAATGGGGGAGGAAGGTGGG
TTCGCACCACCGTTCGCATCGATCGCATATTTGGTCGTTAAACATTGCAGTTTTATTTTC
GCCCTATCCTATCTATTAGTCATGCCATAACGCTACGTTGCTGGAGCTTGGCGCTGTCTA
CTTAACGGGCCCTCCTTAGGACCACCGACGGGACCACCACCCCCGATCGCTTCCGTCACG
GATCGCAGCTGTCCAAAATCGAACCGGGTCGTCTTTTTGGGCTCTTCCGTCCGACCTGCA
CTCGTCGCATACTCGCTGATCGTGACGGCGATCGGTTTTTGGGATTTCTTCATGGTTGGC
GGTCCGGTTGCCTGCGGGCAGAAGTAGTACGAAGGGGGCCGTACCGGTGGTTGTTGCGGA
TTGTTCAGCTTGAACGATTCGATCGATTCCAGCTCGGCACTGTCGCCGCTTGCCTTCGCC
ATTTCTGACGCCGCCACTCGTCCCATCGTGCCTTTGGGCGATTTTCTTGCCCCATTTGCA
CCGTTGACTGCGTCCTGGATCGGCTGACCGTGGTCCGCATCATTCGTTTTGGGGGGCTGT
TTCTTTAGTTCCGCGTTGTCGAATCCATTCTTGAACATACGTTTGTGCACCGCCCGGAAC
TCGTCCATGAGGGCGGTGTGCCGTTCGTCCGAAATGGCCATCGTTACCGGGCGCAAACGG
ACGTTCTTTTCCTTCAGCCGATTCTCGAGCTCGGTGAGGGCGGCAGCCGGCCCGGTGGCC
GGGTCCGTCGCCCCGCCGCCCGCCGGTGCCGCTTTCTTCTGTGCCCGGCGCCGCAGCTCG
CGGACGCGTGGGCGG

consensusID : consensus_8317#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 829
fasta sequence

                              [TCGGGTTTCTCTTGGNGAATTTCTGTTCAATTCCGTTCGNGCGGGCCCCGGTTTCCCTTTGCCGGCTCCAAGGAACGTTAAGTTACGAAANGGGGNCCCCGTGTAACCCGGTTGNGCTTTTGCTTNCCCGGAATTGCTTCAGCTTGAACGATTCGATCGATTCCAGCTCGGCACTGTCGCCGCTTGCCTTCGCCATGTCTGACGCCCGCCACTCGTCCCATCGTGCCTTTGGGCGATTTTCTTGCCCCCATTTTGCACCGTTGACTGCGTCCTGGATCGGCTGACCGTGGTCCGCATCATTCGTTTTGGGGGCTGTTTCTTTAGTTCCGCGTTGTCGAATCCATTCTTGAACATACGTTTGTGCACCGCCCGGAACTCGTCCATCAGGGCGGTGTGCCGTTCGTCCGAAATGGCCATCGTTACCGGGCGCAAACGGACGTTCTTTTCCTTCAGCCGATTCTCGAGCTCGGTGAGGGCGGCGGCCGGCCCGGTGGCCGGGTCCGTCGCGCCGCCGCCCGCCGGTGCCGCTTTCTTCTGTGCCCGGCGCCGCAGCTCGTCCGATATTGCGTTGCTCAGGCTGTGATGGGCCGCAGCGGCGGACGCTTGTTCTTGCGCTAGCGTCGTGCTGGACGATGCCGCTGCTGCATTCGTCACCGACTGGCCACTGGATGTCGTGACAGTGTCCGCGAACAGGGGCGGAGGCGGTGGAATGATCGTACCCGCTGCTGCAGCCTCATGCCCCGTCTCGTCGTCCACCATCGAGCCGGCCGATGCGCTCCGGTGCACCTCGACAATGATCGTTTTCGTTTCACCCTCGTGCGGATCTTGG]

[-] EMBL BX467450             [TCGGGTTTCTCTTGGNGAATTTCTGTTCAATTCCGTTCGNGCGGGCCCCGGTTTCCCTTTGCCGGCTCCAAGGAACGTTAAGTTACGAAANGGGGNCCCCGTGTAACCCGGTTGNGCTTTTGCTTNCCCGGAATTGCTTCAGCTTGAACGATTCGATCGATTCCAGCTCGGCACTGTCGCCGCTTGCCTTCGCCATGTCTGACGCCCGCCACTCGTCCCATCGTGCCTTTGGGCGATTTTCTTGCCCCCATTTTGCACCGTTGACTGCGTCCTGGATCGGCTGACCGTGGTCCGCATCATTCGTTTTGGGGGCTGTTTCTTTAGTTCCGCGTTGTCGAATCCATTCTTGAACATACGTTTGTGCACCGCCCGGAACTCGTCCATCAGGGCGGTGTGCCGTTCGTCCGAAATGGCCATCGTTACCGGGCGCAAACGGACGTTCTTTTCCTTCAGCCGATTCTCGAGCTCGGTGAGGGCGGCGGCCGGCCCGGTGGCCGGGTCCGTCGCGCCGCCGCCCGCCGGTGCCGCTTTCTTCTGTGCCCGGCGCCGCAGCTCGTCCGATATTGCGTTGCTCAGGCTGTGATGGGCCGCAGCGGCGGACGCTTGTTCTTGCGCTAGCGTCGTGCTGGACGATGCCGCTGCTGCATTCGTCACCGACTGGCCACTGGATGTCGTGACAGTGTCCGCGAACAGGGGCGGAGGCGGTGGAATGATCGTACCCGCTGCTGCAGCCTCATGCCCCGTCTCGTCGTCCACCATCGAGCCGGCCGATGCGCTCCGGTGCACCTCGACAATGATCGTTTTCGTTTCACCCTCGTGCGGATCTTGG]




>consensus_8317#2
TCGGGTTTCTCTTGGNGAATTTCTGTTCAATTCCGTTCGNGCGGGCCCCGGTTTCCCTTT
GCCGGCTCCAAGGAACGTTAAGTTACGAAANGGGGNCCCCGTGTAACCCGGTTGNGCTTT
TGCTTNCCCGGAATTGCTTCAGCTTGAACGATTCGATCGATTCCAGCTCGGCACTGTCGC
CGCTTGCCTTCGCCATGTCTGACGCCCGCCACTCGTCCCATCGTGCCTTTGGGCGATTTT
CTTGCCCCCATTTTGCACCGTTGACTGCGTCCTGGATCGGCTGACCGTGGTCCGCATCAT
TCGTTTTGGGGGCTGTTTCTTTAGTTCCGCGTTGTCGAATCCATTCTTGAACATACGTTT
GTGCACCGCCCGGAACTCGTCCATCAGGGCGGTGTGCCGTTCGTCCGAAATGGCCATCGT
TACCGGGCGCAAACGGACGTTCTTTTCCTTCAGCCGATTCTCGAGCTCGGTGAGGGCGGC
GGCCGGCCCGGTGGCCGGGTCCGTCGCGCCGCCGCCCGCCGGTGCCGCTTTCTTCTGTGC
CCGGCGCCGCAGCTCGTCCGATATTGCGTTGCTCAGGCTGTGATGGGCCGCAGCGGCGGA
CGCTTGTTCTTGCGCTAGCGTCGTGCTGGACGATGCCGCTGCTGCATTCGTCACCGACTG
GCCACTGGATGTCGTGACAGTGTCCGCGAACAGGGGCGGAGGCGGTGGAATGATCGTACC
CGCTGCTGCAGCCTCATGCCCCGTCTCGTCGTCCACCATCGAGCCGGCCGATGCGCTCCG
GTGCACCTCGACAATGATCGTTTTCGTTTCACCCTCGTGCGGATCTTGG

consensusID : consensus_8317#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 694
fasta sequence

                              [AAGGGGGCCGTACCGGTGGTTGTTGCGGATTGTTCAGCTTGAACGATTCGATCGATTCCAGCTCGGCACTGTCGCCGCTTGCCTTCGCCATTTTCTGACGCCGCCACTTCGTCCCATCGTGCCTTTGGGCGATTTTCTTGCCCCATTTGCACCGTTGACTGCGTCCTGGATCGGCTGACCGTGGTCCGCATCATTCGTTTTGGGGGGCTGTTTCTTTAGTTCCGCGTTGTCGAATCCATTCTTGAACATACGTTTGTGCACCGCCCGGAACTCGTCCATGAGGGCGGTGTGCCGTTCGTCCGAAATGGCCATCGTTACCGGGCGCAAACGGACGTTCTTTTCCTTCAGCCGATTCTCGAGCTCGGTGAGGGCGGCAGCCGGCCCGGTGGCCGGGTCCGTCGCCCCGCCGCCCGGCCGGTGCCGCTTTCTTCTGTGCCCGGCGCCGCAGCTCGTCCGATATTGCGTTGCTCAGGCTGTGATGGGCCGCAGCGGCGGACGCTTGTTCTTGCGCTAGCGTCGTGCTGGACGATGCCGCTGCTGCATTCGTCACCGACTGGCCACTGGATGTCGTGACGGTGTCGGCGAACAGGGGCGGAGGCGGTGGAATGATCGTACCCGCTGCTGCAGCTCCATGGCCCGTCTCGTCGTCCACCATCGAGCCGACCGATGCGCTCCGGTGCACCTCGACAATCGG]

[-] EMBL BM578473             [AAGGGGGCCGTACCGGTGGTTGTTGCGGATTGTTCAGCTTGAACGATTCGATCGATTCCAGCTCGGCACTGTCGCCGCTTGCCTTCGCCATTTTCTGACGCCGCCACTTCGTCCCATCGTGCCTTTGGGCGATTTTCTTGCCCCATTTGCACCGTTGACTGCGTCCTGGATCGGCTGACCGTGGTCCGCATCATTCGTTTTGGGGGGCTGTTTCTTTAGTTCCGCGTTGTCGAATCCATTCTTGAACATACGTTTGTGCACCGCCCGGAACTCGTCCATGAGGGCGGTGTGCCGTTCGTCCGAAATGGCCATCGTTACCGGGCGCAAACGGACGTTCTTTTCCTTCAGCCGATTCTCGAGCTCGGTGAGGGCGGCAGCCGGCCCGGTGGCCGGGTCCGTCGCCCCGCCGCCCGGCCGGTGCCGCTTTCTTCTGTGCCCGGCGCCGCAGCTCGTCCGATATTGCGTTGCTCAGGCTGTGATGGGCCGCAGCGGCGGACGCTTGTTCTTGCGCTAGCGTCGTGCTGGACGATGCCGCTGCTGCATTCGTCACCGACTGGCCACTGGATGTCGTGACGGTGTCGGCGAACAGGGGCGGAGGCGGTGGAATGATCGTACCCGCTGCTGCAGCTCCATGGCCCGTCTCGTCGTCCACCATCGAGCCGACCGATGCGCTCCGGTGCACCTCGACAATCGG]




>consensus_8317#3
AAGGGGGCCGTACCGGTGGTTGTTGCGGATTGTTCAGCTTGAACGATTCGATCGATTCCA
GCTCGGCACTGTCGCCGCTTGCCTTCGCCATTTTCTGACGCCGCCACTTCGTCCCATCGT
GCCTTTGGGCGATTTTCTTGCCCCATTTGCACCGTTGACTGCGTCCTGGATCGGCTGACC
GTGGTCCGCATCATTCGTTTTGGGGGGCTGTTTCTTTAGTTCCGCGTTGTCGAATCCATT
CTTGAACATACGTTTGTGCACCGCCCGGAACTCGTCCATGAGGGCGGTGTGCCGTTCGTC
CGAAATGGCCATCGTTACCGGGCGCAAACGGACGTTCTTTTCCTTCAGCCGATTCTCGAG
CTCGGTGAGGGCGGCAGCCGGCCCGGTGGCCGGGTCCGTCGCCCCGCCGCCCGGCCGGTG
CCGCTTTCTTCTGTGCCCGGCGCCGCAGCTCGTCCGATATTGCGTTGCTCAGGCTGTGAT
GGGCCGCAGCGGCGGACGCTTGTTCTTGCGCTAGCGTCGTGCTGGACGATGCCGCTGCTG
CATTCGTCACCGACTGGCCACTGGATGTCGTGACGGTGTCGGCGAACAGGGGCGGAGGCG
GTGGAATGATCGTACCCGCTGCTGCAGCTCCATGGCCCGTCTCGTCGTCCACCATCGAGC
CGACCGATGCGCTCCGGTGCACCTCGACAATCGG

consensusID : consensus_8317#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 389
fasta sequence

                              [GAAGGAGTTGTTGCTGCGGAATGATTTCATCGCTATCGATGGTGCCAGCGAAATTGAGCATAAGCTGCAGGAAGCGGGCATAGCGCATGATAAACTAGCGCACAGCGGTCAGGAATCGGACTATGATGAGGAGGACGGAGATGGTGACTCGTACCATCATACGAACCAGAAGCACCAAGCACGGGAGTACATTTTTTCTGGCCTGCTGGCGTTGATGAACGTGTGCGTGATGGCGTGGGGAGGTTTTCGCCTGTACAAGGCGTTGCACAGTGACAAGTGAACGCATAAAGCAAAATGTCAGCAAAATGTTAGCAGCTAGGTTTACACACTCAAACAAATCATAAGTCCATCAATTTTTAATATCCACAATCACATTTTATAATCGATCG]

[+] EMBL AGA284155            [GAAGGAGTTGTTGCTGCGGAATGATTTCATCGCTATCGATGGTGCCAGCGAAATTGAGCATAAGCTGCAGGAAGCGGGCATAGCGCATGATAAACTAGCGCACAGCGGTCAGGAATCGGACTATGATGAGGAGGACGGAGATGGTGACTCGTACCATCATACGAACCAGAAGCACCAAGCACGGGAGTACATTTTTTCTGGCCTGCTGGCGTTGATGAACGTGTGCGTGATGGCGTGGGGAGGTTTTCGCCTGTACAAGGCGTTGCACAGTGACAAGTGAACGCATAAAGCAAAATGTCAGCAAAATGTTAGCAGCTAGGTTTACACACTCAAACAAATCATAAGTCCATCAATTTTTAATATCCACAATCACATTTTATAATCGATCG]
[+] EMBL AGA283787            [GAACGAGTTGTTGCTGCGGAATGATTTCATCGCTATCGATGGTGCCAGCGATATTGACCATAAGCTGCAGGAAGCGGGCATAACGCATGATAAACTAACGCACAGCGGTCAGGAATCGGACTAAGATGAGGAGGACGGAGATGGTGACTCGTACCATCATACGAACCAGAAGCACCAAGCACGGGAGTACATTTTTTCTGGCCTGCTGGCGTTGATAAACGTGTGCGTGATGGCGTGTGGAGGTTTTCGCCTGTACAAGGCGTTGCACACTGACAAGTGGATGCACAAAGCAA                                                                                                ]
[-] EMBL AGA285451            [                          TCATCGCTATCGATGGTGCCAGCGAAATTGAGCATAAGCTGCAGGAAGCGGGCATAGCGCATGATAAACTAGCGCACAGCGGTCAGGAATCGGACTATGATGAGGAGGACGGAGATGGTGACTCGTACCATCATACGAACCAGAAGCACCAAGCACGGGAGTACATTTTTTCTGGCCTGCTGGCGTTGATGAACGTGTGCGTGATGGCGTGGGGAGGTTTTCGCCTGTACAAGGCGTTGCACAGTGACAAGTGAACGCATAAAGCAAAATGTCAGCAAAATGTTAGCAGCTAGGTTTACACACTCAAACAAATCATAAGTCCATCAATTTTTAATATCCACAATCACATTTTAT         ]




>consensus_8317#4
GAAGGAGTTGTTGCTGCGGAATGATTTCATCGCTATCGATGGTGCCAGCGAAATTGAGCA
TAAGCTGCAGGAAGCGGGCATAGCGCATGATAAACTAGCGCACAGCGGTCAGGAATCGGA
CTATGATGAGGAGGACGGAGATGGTGACTCGTACCATCATACGAACCAGAAGCACCAAGC
ACGGGAGTACATTTTTTCTGGCCTGCTGGCGTTGATGAACGTGTGCGTGATGGCGTGGGG
AGGTTTTCGCCTGTACAAGGCGTTGCACAGTGACAAGTGAACGCATAAAGCAAAATGTCA
GCAAAATGTTAGCAGCTAGGTTTACACACTCAAACAAATCATAAGTCCATCAATTTTTAA
TATCCACAATCACATTTTATAATCGATCG

consensusID : consensus_8317#5
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 267
fasta sequence

                              [ATATGTAAGATACATATACACATTGTAACGTATTTGTCATAAGTAACTGTAGTCGATCGATTGTACAATGTGATTGTGGATATTAAAAATTGAGGGACCTATGATTTGTTTGAATGTGTAAACCAACCTGCTAACATTTTGCTGACATTTTGCTTTATGCGTGCACTTGTCACTGTGCAACGCCTTGTAAAGGCTAAAACCTCCCCACACCATCACGCAGACGTTCATCAATGCCAACATGGCAAAAAAAATGTACTCCCATGCTTG]

[+] EMBL AGA285078            [ATATGTAAGATACATATACACATTGTAACGTATTTGTCATAAGTAACTGTAGTCGATCGATTGTACAATGTGATTGTGGATATTAAAAATTGAGGGACCTATGATTTGTTTGAATGTGTAAACCAACCTGCTAACATTTTGCTGACATTTTGCTTTATGCGTGCACTTGTCACTGTGCAACGCCTTGTAAAGGCTAAAACCTCCCCACACCATCACGCAGACGTTCATCAATGCCAACATGGCAAAAAAAATGTACTCCCATGCTTG]




>consensus_8317#5
ATATGTAAGATACATATACACATTGTAACGTATTTGTCATAAGTAACTGTAGTCGATCGA
TTGTACAATGTGATTGTGGATATTAAAAATTGAGGGACCTATGATTTGTTTGAATGTGTA
AACCAACCTGCTAACATTTTGCTGACATTTTGCTTTATGCGTGCACTTGTCACTGTGCAA
CGCCTTGTAAAGGCTAAAACCTCCCCACACCATCACGCAGACGTTCATCAATGCCAACAT
GGCAAAAAAAATGTACTCCCATGCTTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8317#2      ------------------------------------------------------------
consensus_8317#3      ------------------------------------------------------------
consensus_8317#1      CACCCCCCCATTTTTATAATCGATCGATTACACTTACTTATGACAAATACGTTACAATAT 60
consensus_8317#5      ------------------------------------------------------------
consensus_8317#4      ------------------------------------------------------------
consensus_8317#0      ------------------------------------------------------------
                                                                                  

consensus_8317#2      ------------------------------------------------------------
consensus_8317#3      ------------------------------------------------------------
consensus_8317#1      GTATATGTATCTTACATATTGTATCACCACAAACAAAGAACAGAAAAATACACCTTTTAA 120
consensus_8317#5      ------------------------------------------------------------
consensus_8317#4      ------------------------------------------------------------
consensus_8317#0      ---------------------------------------------------CCGGACGCT 9
                                                                                  

consensus_8317#2      ------------------------------------------------------------
consensus_8317#3      ------------------------------------------------------------
consensus_8317#1      ACCATCCACGGAACCCAGTCATGTGCAGTGTGCTTGTCTTGAATGGGGGAGGAAGGTGGG 180
consensus_8317#5      ------------------------------------------------------------
consensus_8317#4      ------------------------------------------------------------
consensus_8317#0      GGGCAGCAGACACGGGTGCGTACGGTGCGTCTGGTACGGCCCCATCATGGCTACAGCCAT 69
                                                                                  

consensus_8317#2      ------------------------------------------------------------
consensus_8317#3      ------------------------------------------------------------
consensus_8317#1      TTCGCACCACCGTTCGCATCGATCGCATATTTGGTCGTTAAACATTGCAGTTTTATTTTC 240
consensus_8317#5      ------------------------------------------------------------
consensus_8317#4      ------------------------------------------------------------
consensus_8317#0      CGGAACCTACCGATCACGGGCAGCAACTTTGGCTTTTCCATACGCGGCGGGTTGGAGTAC 129
                                                                                  

consensus_8317#2      ------------------------------------------------------------
consensus_8317#3      ------------------------------------------------------------
consensus_8317#1      GCCCTATCCTATCTATTAGTCATGCCATAACGCTACGTTGCTGGAGCTTGGCGCTGTCTA 300
consensus_8317#5      ------------------------------------------------------------
consensus_8317#4      ------------------------------------------------------------
consensus_8317#0      GGCACCGGGTTCTTCGTGTCCGCTATAGAGCGTGATTCTGAAGCTGATCGGCAGGGATTG 189
                                                                                  

consensus_8317#2      ------------------------------------------------------------
consensus_8317#3      ------------------------------------------------------------
consensus_8317#1      CTTAACGGGCCCTCCTTAGGACCACCGACGGGACCACCACCCCCGATCGCTTCCGTCACG 360
consensus_8317#5      ------------------------------------------------------------
consensus_8317#4      ------------------------------------------------------------
consensus_8317#0      AAGGTAGGAGATCAGATCATACGCGTCAATGGGTATCAGGTGGAGGATGCAGTACATCGC 249
                                                                                  

consensus_8317#2      --------------------------------------------------TCGGGTTTCT 10
consensus_8317#3      ------------------------------------------------------------
consensus_8317#1      GATCGCAGCTGTCCAAAATCGAACCGGGTCGTCTTTTTGGGCTCTTCCGTCCGACCTGCA 420
consensus_8317#5      ------------------------------------------------------------
consensus_8317#4      ------------------------------------------------------------
consensus_8317#0      GAGCTGGCCCAATTCATTGCCAATCAGGAGCGACTGATCATGAAGGTGCGCGGGCTCGGC 309
                                                                                  

consensus_8317#2      CTTGGNGAATTTCTGTTCAATTCCGTTCGNGCGGGCCCCGGTTTCCCTTTGCCGGCTCCA 70
consensus_8317#3      ------------------------------------------------------------
consensus_8317#1      CTCGTCGCATACTCGCTGATCGTGACGGCGATCGGTTTTTGGGATTTCTTCATGGTTGGC 480
consensus_8317#5      ------------------------------------------------------------
consensus_8317#4      -----------------------------------------------------------G 1
consensus_8317#0      ATCCTACCGATCAAAGAACGTACAGCCGACCCGCTAACCTGGCACGTGGTGTCGTTTGGA 369
                                                                                  

consensus_8317#2      AGGAACGTTAAGTTACGAAANGGGGNCCCCGTGTAACCCGGTTGNGCTTTTGCTTNCCCG 130
consensus_8317#3      ----------------------------------AAGGGGGCCGTACCGGTGGTTGTTGC 26
consensus_8317#1      GGTCCGGTTGCCTGCGGGCAGAAGTAGTACG---AAGGGGGCCGTACCGGTGGTTGTTGC 537
consensus_8317#5      ------------------------------------------------------------
consensus_8317#4      AAGGAGTTGTTGCTGCGGAATGATTTCATCGCTATCGATGGTGCCAGCGAAATTGAGCAT 61
consensus_8317#0      ATGTCGCGCGACAAGCAGGACGCGCTGCTGCTGGAAGAACCGTGCGGTGGGCGCGATGTG 429
                                                                                  

consensus_8317#2      GAATTGC-TTCAGCTTGAACGATTCGATCGATTCCAGCTCGGCACTGTCGCCGCTTG--C 187
consensus_8317#3      GGATTG--TTCAGCTTGAACGATTCGATCGATTCCAGCTCGGCACTGTCGCCGCTTG--C 82
consensus_8317#1      GGATTG--TTCAGCTTGAACGATTCGATCGATTCCAGCTCGGCACTGTCGCCGCTTG--C 593
consensus_8317#5      ---------------------ATATGTAAGATAC-ATATACACATTGTAACGTATT---- 34
consensus_8317#4      AAGCTGCAGGAAGCGGGCATAGCGCATGATAAACTAGCGCACAGCGGTCAGGAATCGGAC 121
consensus_8317#0      AAGGTGATCCTCTCGGTGGCACCGCGCACCAAGCTGGGCTGCGGCATTTGCAAGGGTCCC 489
                                                    *  *             *            

consensus_8317#2      CTTCGCCATGT--CTGACGCCCGCCACTCGTCCCATCGTGCCTTTGGGCGATTTTCTTGC 245
consensus_8317#3      CTTCGCCATTTT-CTGACGCCGCCACTTCGTCCCATCGTGCCTTTGGGCGATTTTCTTGC 141
consensus_8317#1      CTTCGCCATTT--CTGACGCC-GCCACTCGTCCCATCGTGCCTTTGGGCGATTTTCTTGC 650
consensus_8317#5      TGTCATAAGTAA-CTGTAGTCGATCGATTGTACAAT-GTGATTGTGG---ATATTAAAAA 89
consensus_8317#4      TATGATGAGGAGGACGGAGATGGTGACTCGTACCATCATACGAACCAGAAGCACCAAGCA 181
consensus_8317#0      GACTGGAAGCCAGGCATATTTGTCCAGTTCACCAAGAGAGGGAGGCGTGGGCGCGGGAGG 549
                             *                   *    * *                         

consensus_8317#2      CCCCAT------TTTGCACCGTTGACTGCGTCCTG-GATCGGCTGACCGTGGTCCGCATC 298
consensus_8317#3      CCCA--------TTTGCACCGTTGACTGCGTCCTG-GATCGGCTGACCGTGGTCCGCATC 192
consensus_8317#1      CCCA--------TTTGCACCGTTGACTGCGTCCTG-GATCGGCTGACCGTGGTCCGCATC 701
consensus_8317#5      TTGA----------GGGACCTATGATT-TGTT-TG-AATGTGTAAACCA--ACCTGC-TA 133
consensus_8317#4      CGGG----------AGTACATTTT-TTCTGGCCTG-CTGGCGTTGATGAACGTGTGCGTG 229
consensus_8317#0      CCGGCTTACGGCCCGGCGAATCAGATTCTGTCCTGCAATGGGCACAGCTTTGCCGAGGCC 609
                                     *          *  *   **      *   *              

consensus_8317#2      ATTCGTTTTGGGGG-CTGTTTCTTTAGTTCCGCGTTGTCGAATCCATTC-TTGAACATAC 356
consensus_8317#3      ATTCGTTTTGGGGGGCTGTTTCTTTAGTTCCGCGTTGTCGAATCCATTC-TTGAACATAC 251
consensus_8317#1      ATTCGTTTTGGGGGGCTGTTTCTTTAGTTCCGCGTTGTCGAATCCATTC-TTGAACATAC 760
consensus_8317#5      A--CATTTTGCTGACATTTTGCTTTA----TGCGT----GCACTTGTCA-CTGTGCA-AC 181
consensus_8317#4      AT-GGCGTGGGGAGGTTTTCGCCTGTACAAGGCGTTG-CACAGTGACAA-GTGAACGCAT 286
consensus_8317#0      A--CGTTTGGCGAGGCGGTGGCCGTGATGAAGTCATCGCACGTGCTCGAGCTGGTGGTGC 667
                      *      * *        *  *         *                   **       

consensus_8317#2      GTTTGTGCACCGCCCGGAACTCGTCCATCAGGGCGGTGTGCCGTTCGTCCGAAATGGCCA 416
consensus_8317#3      GTTTGTGCACCGCCCGGAACTCGTCCATGAGGGCGGTGTGCCGTTCGTCCGAAATGGCCA 311
consensus_8317#1      GTTTGTGCACCGCCCGGAACTCGTCCATGAGGGCGGTGTGCCGTTCGTCCGAAATGGCCA 820
consensus_8317#5      GCCT-TGTAAAGGCTAAAACCTCCCCACACCATCACGCAGACGTTCATC---AATG-CCA 236
consensus_8317#4      AAA-GCAAAATGTCAGCAAAATGTTAGCAGCTAGGTTTACACACTCAAAC-AAATCATAA 344
consensus_8317#0      GCCCCAGTGCCGGGTTGGATCTGTTCCCGGGCGAATCGAGCGGCTACAACAGCTCGGCGA 727
                                 *      *                         *              *

consensus_8317#2      TCGTTACCGGGCGCAA-ACGGACGTTCTTTTCCTTCAGCCGATTCTCGAGCTCGGTGAGG 475
consensus_8317#3      TCGTTACCGGGCGCAA-ACGGACGTTCTTTTCCTTCAGCCGATTCTCGAGCTCGGTGAGG 370
consensus_8317#1      TCGTTACCGGGCGCAA-ACGGACGTTCTTTTCCTTCAGCCGATTCTCGAGCTCGGTGAGG 879
consensus_8317#5      ACATGGCAAA----AA-AAATGTACTCCCATGCTTG------------------------ 267
consensus_8317#4      GTCCATCAATTTTTAATATCCACAATCACATTTTATAATCGATCG--------------- 389
consensus_8317#0      GCAGTGTCAACGGTGA-CCAGAGTCCGTGCTGGGGTGACCAGACGTCCAAGCGGCTAAGC 786
                                     *              *                             

consensus_8317#2      GCGGCGGCCGGCCCGGTGGCCGGGTCCGTCGCGCCGCCGCCCG-CCGGTGCCGCTTTCTT 534
consensus_8317#3      GCGGCAGCCGGCCCGGTGGCCGGGTCCGTCGCCCCGCCGCCCGGCCGGTGCCGCTTTCTT 430
consensus_8317#1      GCGGCAGCCGGCCCGGTGGCCGGGTCCGTCGCCCCGCCGCCCG-CCGGTGCCGCTTTCTT 938
consensus_8317#5      ------------------------------------------------------------
consensus_8317#4      ------------------------------------------------------------
consensus_8317#0      ATCGTGCGGGAAGAGTCGATCACGCACGATCGCCGTCGGCTGGCAGCGGCACCGGTCGCA 846
                                                                                  

consensus_8317#2      CTGTGCCCGGCGCCGCAGCTCGTCCGATATTGCGTTGCTCAGGCTGTGATGGGCCGCAGC 594
consensus_8317#3      CTGTGCCCGGCGCCGCAGCTCGTCCGATATTGCGTTGCTCAGGCTGTGATGGGCCGCAGC 490
consensus_8317#1      CTGTGCCCGGCGCCGCAGCTCGCGGACGCGTGGGCGG----------------------- 975
consensus_8317#5      ------------------------------------------------------------
consensus_8317#4      ------------------------------------------------------------
consensus_8317#0      ACAGTACCGGAAATGCCACCAGCCAGCGATAACAAATCGGGCGTCCCTCCTCCACCGCCG 906
                                                                                  

consensus_8317#2      GGCGGACGCTTGTTCTTGCGCTAGCGTCGTGCTGGACGATGCCGCTGCTGCATTCGTCAC 654
consensus_8317#3      GGCGGACGCTTGTTCTTGCGCTAGCGTCGTGCTGGACGATGCCGCTGCTGCATTCGTCAC 550
consensus_8317#1      ------------------------------------------------------------
consensus_8317#5      ------------------------------------------------------------
consensus_8317#4      ------------------------------------------------------------
consensus_8317#0      CCTCAACCCCAGCAACAACCCCATCATCAGGATGAACAACAGGTTCAGCAGCAGCAGCAG 966
                                                                                  

consensus_8317#2      CGACTGGCCACTGGATGTCGTGACAGTGTCCGCGAACAGGGGCGGAGGCGGTGGAATGAT 714
consensus_8317#3      CGACTGGCCACTGGATGTCGTGACGGTGTCGGCGAACAGGGGCGGAGGCGGTGGAATGAT 610
consensus_8317#1      ------------------------------------------------------------
consensus_8317#5      ------------------------------------------------------------
consensus_8317#4      ------------------------------------------------------------
consensus_8317#0      CAGCAACAACAACTGACCCCGAGGGGCACACTGGCTGGAGGGGCGACACGCAGGAAGAAC 1026
                                                                                  

consensus_8317#2      CGTACCCGCTGCTGCAGCCTCATGCCCCGTCTCGTCGTCCACCATCGAGCCGGCCGATGC 774
consensus_8317#3      CGTACCCGCTGCTGCAGCTCCATGGCCCGTCTCGTCGTCCACCATCGAGCCGACCGATGC 670
consensus_8317#1      ------------------------------------------------------------
consensus_8317#5      ------------------------------------------------------------
consensus_8317#4      ------------------------------------------------------------
consensus_8317#0      ACCACCATCATCGAGTTCTCCGAGCGGGGCGCAATCGTGAACCCTGAAGCGAAACAGAGT 1086
                                                                                  

consensus_8317#2      GCTCCGGTGCACCTCGACAATGATCGTTTTCGTTTCACCCTCGTGCGGATCTTGG 829
consensus_8317#3      GCTCCGGTGCACCTCGACAATCGG------------------------------- 694
consensus_8317#1      -------------------------------------------------------
consensus_8317#5      -------------------------------------------------------
consensus_8317#4      -------------------------------------------------------
consensus_8317#0      GAAACGAAAACGATCATTGTCGAGGTGCACCGGAGCGCATCGGCCGGC------- 1134