cluster # 832

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Anopheles gambiae
cluster # 832 cluster # 832 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_832#0 length = 590 sequences # 1

consensus_832#1 length = 525 sequences # 1

consensusID : consensus_832#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 590
fasta sequence

                              [CCGCGGACGCGTGGGTTGCTGTTCATCGACATCAATATTAGCCGGAAGCTGCTGTGGCGCGTACTTAATGGGAAAACGTTGACGCGCCGCGAGCACAAGCTGCTCATCCGGACGACCTCCGATCTGTTCCGGCTCGTGCCGTTCTCGGTGTTTATCATCGTGCCGTTTATGGAGCTGCTGCTGCCGCTCGCGATCAAGCTGTTCCCGGGCATGCTGCCCTCCACCTTCCAGACCGCGACCGAGCGGGAGGACAAGATCAAGCAGAACCTCAAGGTGAAGATCGAGATGGCCAAGTTCCTGCAGAAGACGCTCGACGACATGGCGGTCCAGAACAAGGAGCACCGGTCGCAGGCGGCCAAGGACTTTAGCGAGTTCTTTACCCGCATCCGGACGACGGAGAACTTTACCATCTCGAACGAGGAGATACTGAAGTTTTCCAAACTGTTCGAGGACGAAATTACGCTCGACTCACTCAACCGCCAGCAGCTGCAGGCGCTGTGCCGCGTGCTGGAGGTGTCACCGATCGGCACCTCTAACCTGCTGCGGTTCCAGCTGCGCCTGAAGCTGCGCAACCTGGCGGCGGACGATCG]

[+] EMBL BM648524             [CCGCGGACGCGTGGGTTGCTGTTCATCGACATCAATATTAGCCGGAAGCTGCTGTGGCGCGTACTTAATGGGAAAACGTTGACGCGCCGCGAGCACAAGCTGCTCATCCGGACGACCTCCGATCTGTTCCGGCTCGTGCCGTTCTCGGTGTTTATCATCGTGCCGTTTATGGAGCTGCTGCTGCCGCTCGCGATCAAGCTGTTCCCGGGCATGCTGCCCTCCACCTTCCAGACCGCGACCGAGCGGGAGGACAAGATCAAGCAGAACCTCAAGGTGAAGATCGAGATGGCCAAGTTCCTGCAGAAGACGCTCGACGACATGGCGGTCCAGAACAAGGAGCACCGGTCGCAGGCGGCCAAGGACTTTAGCGAGTTCTTTACCCGCATCCGGACGACGGAGAACTTTACCATCTCGAACGAGGAGATACTGAAGTTTTCCAAACTGTTCGAGGACGAAATTACGCTCGACTCACTCAACCGCCAGCAGCTGCAGGCGCTGTGCCGCGTGCTGGAGGTGTCACCGATCGGCACCTCTAACCTGCTGCGGTTCCAGCTGCGCCTGAAGCTGCGCAACCTGGCGGCGGACGATCG]




>consensus_832#0
CCGCGGACGCGTGGGTTGCTGTTCATCGACATCAATATTAGCCGGAAGCTGCTGTGGCGC
GTACTTAATGGGAAAACGTTGACGCGCCGCGAGCACAAGCTGCTCATCCGGACGACCTCC
GATCTGTTCCGGCTCGTGCCGTTCTCGGTGTTTATCATCGTGCCGTTTATGGAGCTGCTG
CTGCCGCTCGCGATCAAGCTGTTCCCGGGCATGCTGCCCTCCACCTTCCAGACCGCGACC
GAGCGGGAGGACAAGATCAAGCAGAACCTCAAGGTGAAGATCGAGATGGCCAAGTTCCTG
CAGAAGACGCTCGACGACATGGCGGTCCAGAACAAGGAGCACCGGTCGCAGGCGGCCAAG
GACTTTAGCGAGTTCTTTACCCGCATCCGGACGACGGAGAACTTTACCATCTCGAACGAG
GAGATACTGAAGTTTTCCAAACTGTTCGAGGACGAAATTACGCTCGACTCACTCAACCGC
CAGCAGCTGCAGGCGCTGTGCCGCGTGCTGGAGGTGTCACCGATCGGCACCTCTAACCTG
CTGCGGTTCCAGCTGCGCCTGAAGCTGCGCAACCTGGCGGCGGACGATCG

consensusID : consensus_832#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 525
fasta sequence

                              [CAGCGCATATGGGCCGAGCTGGTGCACTACTACCACGGCTTTCGGTTGCTGTTCATCGACATCAATATTAGCCGGAAGCTGCTGTGGCGCGTACTTAATGGGAAAACGTTGACGCGCCGCGAGCACAAGCTGCTCATCCGGACGACCTCCGATCTGTTCCGGCTCGTGCCGTTCTCGGTGTTTATCATCGTGCCGTTTATGGAGCTGCTGCTGCCGCTCGCGATCAAGCTGTTCCCGGGCATGCTGCCCTCCACCTTCCAGACCGCGACCGAGCGGGAGGACAAGATCAAGCAGAACCTCAAGGTGAAGATCGAGATGGCCAAGTTCCTGCAGAAGACGCTCGACGACATGGCGGTCCAGAACAAGGAGCACCGGTCGCAGGCGGCCAAGGACTTTAGCGAGTTCTTTACCCGCATCCGGACGACGGAGAACTTTACCATCTCGAACGAGGAGATACTGAAGTTTTCCAAACTGTTCGAGGACGAAATTACGCTCGACTCACTCAACCGCCAGCAGCTGCAGGCG]

[+] EMBL AGA281311            [CAGCGCATATGGGCCGAGCTGGTGCACTACTACCACGGCTTTCGGTTGCTGTTCATCGACATCAATATTAGCCGGAAGCTGCTGTGGCGCGTACTTAATGGGAAAACGTTGACGCGCCGCGAGCACAAGCTGCTCATCCGGACGACCTCCGATCTGTTCCGGCTCGTGCCGTTCTCGGTGTTTATCATCGTGCCGTTTATGGAGCTGCTGCTGCCGCTCGCGATCAAGCTGTTCCCGGGCATGCTGCCCTCCACCTTCCAGACCGCGACCGAGCGGGAGGACAAGATCAAGCAGAACCTCAAGGTGAAGATCGAGATGGCCAAGTTCCTGCAGAAGACGCTCGACGACATGGCGGTCCAGAACAAGGAGCACCGGTCGCAGGCGGCCAAGGACTTTAGCGAGTTCTTTACCCGCATCCGGACGACGGAGAACTTTACCATCTCGAACGAGGAGATACTGAAGTTTTCCAAACTGTTCGAGGACGAAATTACGCTCGACTCACTCAACCGCCAGCAGCTGCAGGCG]




>consensus_832#1
CAGCGCATATGGGCCGAGCTGGTGCACTACTACCACGGCTTTCGGTTGCTGTTCATCGAC
ATCAATATTAGCCGGAAGCTGCTGTGGCGCGTACTTAATGGGAAAACGTTGACGCGCCGC
GAGCACAAGCTGCTCATCCGGACGACCTCCGATCTGTTCCGGCTCGTGCCGTTCTCGGTG
TTTATCATCGTGCCGTTTATGGAGCTGCTGCTGCCGCTCGCGATCAAGCTGTTCCCGGGC
ATGCTGCCCTCCACCTTCCAGACCGCGACCGAGCGGGAGGACAAGATCAAGCAGAACCTC
AAGGTGAAGATCGAGATGGCCAAGTTCCTGCAGAAGACGCTCGACGACATGGCGGTCCAG
AACAAGGAGCACCGGTCGCAGGCGGCCAAGGACTTTAGCGAGTTCTTTACCCGCATCCGG
ACGACGGAGAACTTTACCATCTCGAACGAGGAGATACTGAAGTTTTCCAAACTGTTCGAG
GACGAAATTACGCTCGACTCACTCAACCGCCAGCAGCTGCAGGCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_832#0      --------------------------CCGCGGACGCG----TGGGTTGCTGTTCATCGAC 30
consensus_832#1      CAGCGCATATGGGCCGAGCTGGTGCACTACTACCACGGCTTTCGGTTGCTGTTCATCGAC 60
                                               *  *   * **    * *****************

consensus_832#0      ATCAATATTAGCCGGAAGCTGCTGTGGCGCGTACTTAATGGGAAAACGTTGACGCGCCGC 90
consensus_832#1      ATCAATATTAGCCGGAAGCTGCTGTGGCGCGTACTTAATGGGAAAACGTTGACGCGCCGC 120
                     ************************************************************

consensus_832#0      GAGCACAAGCTGCTCATCCGGACGACCTCCGATCTGTTCCGGCTCGTGCCGTTCTCGGTG 150
consensus_832#1      GAGCACAAGCTGCTCATCCGGACGACCTCCGATCTGTTCCGGCTCGTGCCGTTCTCGGTG 180
                     ************************************************************

consensus_832#0      TTTATCATCGTGCCGTTTATGGAGCTGCTGCTGCCGCTCGCGATCAAGCTGTTCCCGGGC 210
consensus_832#1      TTTATCATCGTGCCGTTTATGGAGCTGCTGCTGCCGCTCGCGATCAAGCTGTTCCCGGGC 240
                     ************************************************************

consensus_832#0      ATGCTGCCCTCCACCTTCCAGACCGCGACCGAGCGGGAGGACAAGATCAAGCAGAACCTC 270
consensus_832#1      ATGCTGCCCTCCACCTTCCAGACCGCGACCGAGCGGGAGGACAAGATCAAGCAGAACCTC 300
                     ************************************************************

consensus_832#0      AAGGTGAAGATCGAGATGGCCAAGTTCCTGCAGAAGACGCTCGACGACATGGCGGTCCAG 330
consensus_832#1      AAGGTGAAGATCGAGATGGCCAAGTTCCTGCAGAAGACGCTCGACGACATGGCGGTCCAG 360
                     ************************************************************

consensus_832#0      AACAAGGAGCACCGGTCGCAGGCGGCCAAGGACTTTAGCGAGTTCTTTACCCGCATCCGG 390
consensus_832#1      AACAAGGAGCACCGGTCGCAGGCGGCCAAGGACTTTAGCGAGTTCTTTACCCGCATCCGG 420
                     ************************************************************

consensus_832#0      ACGACGGAGAACTTTACCATCTCGAACGAGGAGATACTGAAGTTTTCCAAACTGTTCGAG 450
consensus_832#1      ACGACGGAGAACTTTACCATCTCGAACGAGGAGATACTGAAGTTTTCCAAACTGTTCGAG 480
                     ************************************************************

consensus_832#0      GACGAAATTACGCTCGACTCACTCAACCGCCAGCAGCTGCAGGCGCTGTGCCGCGTGCTG 510
consensus_832#1      GACGAAATTACGCTCGACTCACTCAACCGCCAGCAGCTGCAGGCG--------------- 525
                     *********************************************               

consensus_832#0      GAGGTGTCACCGATCGGCACCTCTAACCTGCTGCGGTTCCAGCTGCGCCTGAAGCTGCGC 570
consensus_832#1      ------------------------------------------------------------
                                                                                 

consensus_832#0      AACCTGGCGGCGGACGATCG 590
consensus_832#1      --------------------