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Anopheles gambiae
cluster # 8338 cluster # 8338       Sequences # 10       consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8338#0 length = 1294 sequences # 6  
consensus_8338#1 length = 695 sequences # 2  
 consensus_8338#2 length = 622 sequences # 1  
consensus_8338#3 length = 618 sequences # 1  
consensusID : consensus_8338#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1294
fasta sequence 
                              [CTTGTGTGGGGTTGAGCTTTCCAACGGCCAATCCAATGGAGGAAAGAGAGAGAGAGAGAGATAGAGGAAGGTCGTGCTCTAGTTCATTCATGTTGTGTTCGTTTTGTTTTAATAATTTAAAAATATAAAACTGTTTATTTTATTCCTACCAACACAACCATCTGTGTCGCAAGGAACAGGCGTTAAACTGCGTAAATGGCGCCGTAATGAGAAAGGCTTGAAGGTGGTAGTGTGCTGTAGAGAGGGACCGTAAGGAGAAGTTCAGAAAAGGCCCAGTAGATTGAGTTGAGGGGTTTTGAGCTTTCTTATCCTATTTTCTCCCTTGTAGATATGTGATTTTCTTTACCCCCTCTACCCCATTTTCAATCGTTACATCTTGCCACCTTTTTGTTAGTTTTGTGGTTTTGTTGTGTAAAG--GTGTTAACCACACCCTCTCTCTCTTTTTGTTTTCCCGATGGTGCTTTTAGTTGCTGAGTAGTTTTGGTTTTAAGAAGAACAACAAGGTTTGTGTTAATTTTATTTC-TTCCAA-TTTC-TCGGAACACCGAACATGGATCGAT-GGATTTCTTTACATTTAAACGT-GGATGATGATGTTACGGGGCAGGAAACGACGCAAAGAGGCATGGAAATAGCTTGTACTTAAGTAGGGACTAGCCGAAGCCCCAGGACAGGACGGGAAAGGCGGTTGGCGGTAGTATCGTG-TGTCGTTGATTTGAAGAAAAAAAGCAAACGAAATTGATGTCTTTTAAGACGAAGCGATGCCGGAGAAACATAATCAATTAATCGTGTCGTGTATACAGTTTTCTTATATAGTTTTTAAACTCCCCGCCCCCGCATTATAGTCAAATGTGCGCTGGCGGCGTGTCTCTACTACTACTATTACTACTACTATTACTATTACACGATATCATTATGGTTTCTTACTTTCATTCGTTTTGGGTTGTTTTTT--TTATCTTTAACTAAGTGCAGCGTGAACTCTAAACTGTATGTGTTAGTACACCTTGAACGAAGCAGAAAAAAGAAGAAAAAGAAGAAGAAGATTTCATTACGATGTCGAACAAAGCATGATAACAGAAACAAAGGAAGAAGCCCCGCGCGTTTACCGAATGTGAATTTTGTAGTTTGTAATTGGGAAACGACAGGCTGGTGGGAAGG-AAAGAATTTGCCGCGAGAGAGAGAGAGAGAAAAGAGAAGCCAACCCCACATATTATACACGTACATTTATATATAACTTATACCAGAAAAAATCAAGCTAAAGCTAAAAAACCACCATTATACTTACCATACACCCCACCAC]

[+] EMBL BX627323             [CTTGTGTGGGGTTGAGCTTTCCAACGGCCAATCCAATGGAGGAAAGAGAGAGAGAGAGAGATAGAGGAAGGTCGTGCTCTAGTTCATTCATGTTGTGTTCGTTTTGTTTTAATAATTTAAAAATATAAAACTGTTTATTTTATTCCTACCAACACAACCATCTGTGTCGCAAGGAACAGGCGTTAAACTGCGTAAATGGCGCCGTAATGAGAAAGGCTTGAAGGTGGTAGTGTGCTGTAGAGAGGGACCGTAAGGAGAAGTTCAGAAAAGGCCCAGTAGATTGAGTTGAGGGGTTTTGAGCTTTCTTATCCTATTTTCTCCCTTGTAGATATGTGATTTTCTTTACCCCCTCTACCCCATTTTCAATCGTTACATCTTGCCACCTTTTTGTTAGTTTTGTGGTTTTGTTGTGTAAAG  GTGTTAACCACACCCTCTCTCTCTTTTTGTTTTCCCGATGGTGCTTTTAGTTGCTGAGTAGTTTTAGTTTTAAGAAGAACAACAAGGTTTGTGTTAATTTTATTTCTTTCCAATTTTCTTCGGAACACCGAACATGGATCGATGGGATTTCTTTACATTTAAACGTGGGATGATGAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL BM618414             [                                                                                                                                                                                                                                    ccgGTGCTGTAGAGAGGGACCGTAAGGAGAAGTTCAGAAAAGGCCCAGTAGATTGAGTTGAGGGGTTTTGAGCTTTCTTATCCTATTTTCTCCCTTGTAGATATGTGATTTTCTTTACCCCCTCTACCCCATTTTCAATCGTTACATCTTGCCACCTTTTTGTTAGTTTTGTGGTTTTGTTGTGTAAAG  GTGTTAACCACACCCTCTCTCTCTTTTTGTTTTCCCGATGGTGCTTTTAGTTGCTGAGTAGTTTTGGTTTTAAGAAGAACAACAAGGTTTGTGTTAATTTTATTTC TTCCAA TTTC TCGGAACACCGAACATGGATCGAT GGATTTCTTTACATTTAAACGT GGATGATGATGTTACGGGGCAGGAAACGACGCAAAGAGGCATGGAAATAGCTTGTACTTAAGTAGGGACTAGCCGAAGCCCCAGGACAGGACGGGAAAGGCGGTTGGCGGTAGTATCGTG TGTCGTTGATTTGAAGAAAAAAAGCAAACGAAATTGATGTCTTTTAAGACGAAGCGATGCCGGAGAAACATAATCAATTAATCGTGTCGTGTATACAGTTTTCTTATATAGTTTTTAAACTCCCCGCCCCCGCATTATAGTCAAATGTGCGCTGGCGGCGTGTCTCTACTACTACTATTACTACTACTATTACTATTACACGATATCATTATG                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL BX617682             [                                                                                                                                                                                                                                                                                                                                                            caaCTACCCCATTTTCAATCGTTACTTCTTGCCACCTTTTTGTTAGTTTTGTGGTTTTGTTGTGTAAAGGTGTGTTAAC  CACCCACTCTCTC  TTTGTTTTCCCGATGGTGCTTTTAGTTGCTGACTAGTTTTGGTTTTAAGAAGAACAACAAGGTTTGTGTTAATTTTATTT  ATCCAA TTTC TCGGAACACCGAACATGGATCGAT GGATTTCTTTACATTTAAACGT GGATGATGATGTTACGGGGCAGGAAACGACGCAAAGAGGCATGGAAATAGCTTGTACTTAAGTAGGGACTAGCCGAAGCCCCAGGACAGGACGGGAAAGGCGGTTGGCGGTAGTATCGTGTTGTCGTTGATTTGAAGAAAAAAAGCAAACGAAATTGATGTCTTTTAAGACGAAGAAATGCTGGAGAAACATAATCAATTAGTCGTGTCGTGTATACAGTTTTCTTATATAGTTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL BX613771             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              AACACCGAACATGGATCGAT GGATTTCTTT TTTTTAAACGT GGATGATGATGTTACGGGGCAGGAAACGACGCAAAGAGGCATGGAAATAGCTTGTACTTAAGTAGGGACTAGCCGAAGCCCCAGGACAGGACGGGAAAGGCGGTTGGCGGTAGTATCGTGTTGTCGTTGATTTGAAGAAAAAAAGCAAACGAAATTGATGTCTTTTAAGACGAAGAAATGCTGGAGAAACATAATCAATTAGTCGTGTCGTGTATACAGTTTTCTTATATAGTTTTTAAA ACCCC ACCCCGCATTATAGTCAAATGTGCGCTGGCGGCGTGTCT   CTACTACTATTACTACTACCATTACTATTACACGATATCATTATTGTTTCTTACTTTCATTCGTTTT GGTTGTTTTTTTATTATCTTTAACTAAGTGCAGCGTGAACTCTAAACTGTATGTGTTAGTACACCT                                                                                                                                                                                                                                                                                                        ]
[+] EMBL BM587257             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ccGATGATGTTACGGGGCAGGAAACGACGCAAAGAGGCATGGAAATAGCTTGTACTTAAGTAGGGACTAGCCGAAGCCCCAGGACAGGACGGGAAAGGCGGTTGGCGGTAGTATCGTG TGTCGTTGATTTGAAGAAAAAAAGCAAACGAAATTGATGTCTTTTAAGACGAAGCGATGCCGGAGAAACATAATCAATTAATCGTGTCGTGTATACAGTTTTCTTATATAGTTTTTAAACTCCCCGCCCCCGCATTATAGTCAAATGTGCGCTGGCGGCGTGTCTCTACTACTACTATTACTACTACTATTACTATTACACGATATCATTATGGTTTCTTACTTTCATTCGTTTTGGGTTGTTTTTT  TTATCTTTAACTAAGTGCAGCGTGAACTCTAAACTGTATGTGTTAGTACACCTTGAACGAAGCAGAAAAAAGAAGAAAAAGAAGAAGAAGATTTCATTACGATGTCGAACAAAGCATGATAACAGAAACAAAGGAAGAAGCCCCGCGCGTTTACCGAATGTGAATTTTGTAGTTTGTAATTGGGAAACGACAGGCTGGTGGGAAGG AAAGAATTTGCCGCGAGAGAGAGAGAGAGAAAAGAGAAGCCAACCCCACATATTATACACGTACATTTATATATAACTTATACCAGAAAAAATCAAGCTAAAGCTAAAAAACCACCATTATACTTACCATACACCCCACCAC]
[+] EMBL BM649893             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ccGAAACGACGCAAAGAGGCATGGAAATAGCTTGTACTTAAGTAGGGACTAGCCGAAGCCCCAGGACAGGACGGGAAAGGCGGTTGGCGGTAGTATCGTG TGTCGTTGATTTGAAGAAAAAAAGCAAACGAAATTGATGTCTTTTAAGACGAAGCGATGCCGGAGAAACATAATCAATTAATCGTGTCGTGTATACAGTTTTCTTATATAGTTTTTAAACTCCCCGCCCCCGCATTATAGTCAAATGTGCGCTGGCGGCGTGTCTCTACTACTACTATTACTACTACTATTACTATTACACGATATCATTATGGTTTCTTACTTTCATTCGTTTTGGGTTGTTTTTT  TTATCTTTAACTAAGTGCAGCGTGAACTCTAAACTGTATGTGTTAGTACACCTTGAACGAAGCAGAAAAAAGAAGAAAAAGAAGAAGAAGATTTCATTACGATGTCGAACAAAGCATGATAACAGAAACAAAGGAAGAAGCCCCGCGCGTTTACCGAATGTGAATTTTGTAGTTTGTAATTGGGAAACGACAGGCTGGTGGGAAGGAAAAGAATTTGCCGCGAGAGAGAGAGAGAGAAAAGAGAAGCAAACCCAACATATTATACACGTACATTTATATATAACTTATAC                                                           ]




>consensus_8338#0
CTTGTGTGGGGTTGAGCTTTCCAACGGCCAATCCAATGGAGGAAAGAGAGAGAGAGAGAG
ATAGAGGAAGGTCGTGCTCTAGTTCATTCATGTTGTGTTCGTTTTGTTTTAATAATTTAA
AAATATAAAACTGTTTATTTTATTCCTACCAACACAACCATCTGTGTCGCAAGGAACAGG
CGTTAAACTGCGTAAATGGCGCCGTAATGAGAAAGGCTTGAAGGTGGTAGTGTGCTGTAG
AGAGGGACCGTAAGGAGAAGTTCAGAAAAGGCCCAGTAGATTGAGTTGAGGGGTTTTGAG
CTTTCTTATCCTATTTTCTCCCTTGTAGATATGTGATTTTCTTTACCCCCTCTACCCCAT
TTTCAATCGTTACATCTTGCCACCTTTTTGTTAGTTTTGTGGTTTTGTTGTGTAAAGGTG
TTAACCACACCCTCTCTCTCTTTTTGTTTTCCCGATGGTGCTTTTAGTTGCTGAGTAGTT
TTGGTTTTAAGAAGAACAACAAGGTTTGTGTTAATTTTATTTCTTCCAATTTCTCGGAAC
ACCGAACATGGATCGATGGATTTCTTTACATTTAAACGTGGATGATGATGTTACGGGGCA
GGAAACGACGCAAAGAGGCATGGAAATAGCTTGTACTTAAGTAGGGACTAGCCGAAGCCC
CAGGACAGGACGGGAAAGGCGGTTGGCGGTAGTATCGTGTGTCGTTGATTTGAAGAAAAA
AAGCAAACGAAATTGATGTCTTTTAAGACGAAGCGATGCCGGAGAAACATAATCAATTAA
TCGTGTCGTGTATACAGTTTTCTTATATAGTTTTTAAACTCCCCGCCCCCGCATTATAGT
CAAATGTGCGCTGGCGGCGTGTCTCTACTACTACTATTACTACTACTATTACTATTACAC
GATATCATTATGGTTTCTTACTTTCATTCGTTTTGGGTTGTTTTTTTTATCTTTAACTAA
GTGCAGCGTGAACTCTAAACTGTATGTGTTAGTACACCTTGAACGAAGCAGAAAAAAGAA
GAAAAAGAAGAAGAAGATTTCATTACGATGTCGAACAAAGCATGATAACAGAAACAAAGG
AAGAAGCCCCGCGCGTTTACCGAATGTGAATTTTGTAGTTTGTAATTGGGAAACGACAGG
CTGGTGGGAAGGAAAGAATTTGCCGCGAGAGAGAGAGAGAGAAAAGAGAAGCCAACCCCA
CATATTATACACGTACATTTATATATAACTTATACCAGAAAAAATCAAGCTAAAGCTAAA
AAACCACCATTATACTTACCATACACCCCACCAC

consensusID : consensus_8338#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 695
fasta sequence 
                              [ACTGTGATGTGTCATCACGANGAAGAATCCCCGCGCGNTTACNGAATGTGAATTTTGTAGTTTGTAATTGGGAAACGACTGGCTGGTGGGAAGGAAAGAATTTGCGAGAGAGAGAGAGAGAGAAAAGAGAAGCAAACCCAACATATTATACACGTACATTTATATATAACTTATACAAGAAAAAATCAAGCTAAAGCTAAAAAACCACCATTATACCTACCATACACACCCCACCACATGCGGTCATTTCGGTCACACATTTAGCGAGAACGAACACGAATATTGCGGGCACACACGCGGTGATGATAGCAAGGACACTGCTTTTGAGGGTGTGTGTATGTGTTGTCGGTATATTTTTGTAAAGGTGAAGAGATAAGGCGAAACAAAACCCCCGACACACAACACTGGCGCTGTGTTTGTATAGCGTCACAGCCGGAACCGGTTCGCACAGAGAGAGTGAGGATGGTTGAGCTGCTGAACGCCGCGCGCCTTTGTTCGAAGCACACACTGCAGTGGTCGTATTAGTAGTAGTAGGCCATGGAAGCAGGTGTAGTGTGCACTTGTCAGTCAATTGATGAGTTCAGTTTCGGCTGCTGCTGCTGCCGATTGACGCCCTTTTACGTTTAGTGCAATAGAGTTTATCCTTTTCTGCGAGTCCGCCTTTTTTCTTACCGCGAACCGTCGTGCCGTCATCA]

[+] EMBL BX623354             [ACTGTGATGTGTCATCACGANGAAGAATCCCCGCGCGNTTACNGAATGTGAATTTTGTAGTTTGTAATTGGGAAACGACTGGCTGGTGGGAAGGAAAGAATTTGCGAGAGAGAGAGAGAGAGAAAAGAGAAGCAAACCCAACATATTATACACGTACATTTATATATAACTTATACAAGAAAAAATCAAGCTAAAGCTAAAAAACCACCATTATACCTACCATACACACCCCACCACATGCGGTCATTTCGGTCACACATTTAGCGAGAACGAACACGAATATTGCGGGCACACACGCGGTGATGATAGCAAGGACACTGCTTTTGAGGGTGTGTGTATGTGTTGTCGGTATATTTTTGTAAAGGTGAAGAGATAAGGCGAAACAAAACCCCCGACACACAACACTGGCGCTGTGTTTGTATAGCGTCACAGCCGGAACCGGTTCGCACAGAGAGAGTGAGGATGGTTGAGCTGCTGAACGCCGCGCGCCTTTGTTCGAAGCACACACTGCAGTGGTCGTATTAGTAGTAGTAGGCCATGGAAGCAGGTGTAGTGTGCACTTGTCAGTCAATTGATGAGTTCAGTTTCGGCTGCTGCTGCTGCCGATTGACGCCCTTTTACGTTTAGTGCAATAGAGTTTATCCTTTTCTGCGAGTCCGCCTTTTTTCTTACCGCGAACCGTCGTGCCGTCATCA]
[+] EMBL BX611002             [                                                                                                                                                                                                                                                                                      AATATTGCGGGCACACACGCGGTGATGATAGCAAGGACACTGCTTTTGAGGGTGTGTGTATGTGTTGTCGGTATATTTTTGTAAAGGTGAAGAGATAAGGCGAAACAAAACCCCCGACACACAACACTGGCGCTGTGTTTGTATAGCGTCACAGCCGGAACCGGTTCGCACAGAGAGAGTGAGGATGGTTGAGCTGCTGAACGCCGCGCGCCTTTGTTCGAAGCACACACTGCAGTGGTCGTATTAGTAGTAGTAGGCCATGGAAGCAGGTGTAGTGTGCACTTGTCAGTCAATTGATGAGTTCAGTTTCGGCTGCTGCTGCTGCCGATTGACGCCCTTTTACGTTTAGTGCAATAGAGTTTATCCTTTTCTGCGAGTCCGCCTT                                ]




>consensus_8338#1
ACTGTGATGTGTCATCACGANGAAGAATCCCCGCGCGNTTACNGAATGTGAATTTTGTAG
TTTGTAATTGGGAAACGACTGGCTGGTGGGAAGGAAAGAATTTGCGAGAGAGAGAGAGAG
AGAAAAGAGAAGCAAACCCAACATATTATACACGTACATTTATATATAACTTATACAAGA
AAAAATCAAGCTAAAGCTAAAAAACCACCATTATACCTACCATACACACCCCACCACATG
CGGTCATTTCGGTCACACATTTAGCGAGAACGAACACGAATATTGCGGGCACACACGCGG
TGATGATAGCAAGGACACTGCTTTTGAGGGTGTGTGTATGTGTTGTCGGTATATTTTTGT
AAAGGTGAAGAGATAAGGCGAAACAAAACCCCCGACACACAACACTGGCGCTGTGTTTGT
ATAGCGTCACAGCCGGAACCGGTTCGCACAGAGAGAGTGAGGATGGTTGAGCTGCTGAAC
GCCGCGCGCCTTTGTTCGAAGCACACACTGCAGTGGTCGTATTAGTAGTAGTAGGCCATG
GAAGCAGGTGTAGTGTGCACTTGTCAGTCAATTGATGAGTTCAGTTTCGGCTGCTGCTGC
TGCCGATTGACGCCCTTTTACGTTTAGTGCAATAGAGTTTATCCTTTTCTGCGAGTCCGC
CTTTTTTCTTACCGCGAACCGTCGTGCCGTCATCA

consensusID : consensus_8338#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 622
fasta sequence 
                              [CCGCGGACGCGTGGGTTTATTTTATTCCTACCAACACAACCATCTGTGTCGCAAGGAACAAGCGTTAAACTGCGTAAATGGCGCCGTAATGAGAAATGCTTGAAGGTGGTAGTGTGCCGTAGAGAGGAGGGACCGTAAGGAGACGTTCAGAAAAGGCCCAGTAGATTGAGTTGAGGGTTTTTGAGCTTTCTTATCCTATTTTCTCCCTTGTAGATATGTGATTTTCTTTACCCCCTCTACCCCATTTTCAATCGTTACATCTTGCCACCTTTTTGTTAGTTTTGGGGTTTTGTTGTGTAAAGGTGTTAACCACACCCTCTCTCTCTTTGTTTTCCCGATGGTGCTTTTAGTTGCTGAGTAGTTTTGGTTTTAAGAAGAACAACAAGGTTTGTGTTAATTTTATTTATCCAATTTCTCGGAACACCGAACATGGATCGATGGATTTCTTTACATTTAAACGTGCATGATGAGGTTACGGGGCAGAAAACGACGCAAAGAGGCAAGGAAATAGCTTGTACTTAAGTAGGGACTAGCCGAAGCCCCAGGACAGGACGGGAAAGGCGGTTGGCGGTAGTATCGTGTTGTCGTTGATTTGAAAAAAAGCAAACGAAATTGATGTCTT]

[+] EMBL BM654979             [CCGCGGACGCGTGGGTTTATTTTATTCCTACCAACACAACCATCTGTGTCGCAAGGAACAAGCGTTAAACTGCGTAAATGGCGCCGTAATGAGAAATGCTTGAAGGTGGTAGTGTGCCGTAGAGAGGAGGGACCGTAAGGAGACGTTCAGAAAAGGCCCAGTAGATTGAGTTGAGGGTTTTTGAGCTTTCTTATCCTATTTTCTCCCTTGTAGATATGTGATTTTCTTTACCCCCTCTACCCCATTTTCAATCGTTACATCTTGCCACCTTTTTGTTAGTTTTGGGGTTTTGTTGTGTAAAGGTGTTAACCACACCCTCTCTCTCTTTGTTTTCCCGATGGTGCTTTTAGTTGCTGAGTAGTTTTGGTTTTAAGAAGAACAACAAGGTTTGTGTTAATTTTATTTATCCAATTTCTCGGAACACCGAACATGGATCGATGGATTTCTTTACATTTAAACGTGCATGATGAGGTTACGGGGCAGAAAACGACGCAAAGAGGCAAGGAAATAGCTTGTACTTAAGTAGGGACTAGCCGAAGCCCCAGGACAGGACGGGAAAGGCGGTTGGCGGTAGTATCGTGTTGTCGTTGATTTGAAAAAAAGCAAACGAAATTGATGTCTT]




>consensus_8338#2
CCGCGGACGCGTGGGTTTATTTTATTCCTACCAACACAACCATCTGTGTCGCAAGGAACA
AGCGTTAAACTGCGTAAATGGCGCCGTAATGAGAAATGCTTGAAGGTGGTAGTGTGCCGT
AGAGAGGAGGGACCGTAAGGAGACGTTCAGAAAAGGCCCAGTAGATTGAGTTGAGGGTTT
TTGAGCTTTCTTATCCTATTTTCTCCCTTGTAGATATGTGATTTTCTTTACCCCCTCTAC
CCCATTTTCAATCGTTACATCTTGCCACCTTTTTGTTAGTTTTGGGGTTTTGTTGTGTAA
AGGTGTTAACCACACCCTCTCTCTCTTTGTTTTCCCGATGGTGCTTTTAGTTGCTGAGTA
GTTTTGGTTTTAAGAAGAACAACAAGGTTTGTGTTAATTTTATTTATCCAATTTCTCGGA
ACACCGAACATGGATCGATGGATTTCTTTACATTTAAACGTGCATGATGAGGTTACGGGG
CAGAAAACGACGCAAAGAGGCAAGGAAATAGCTTGTACTTAAGTAGGGACTAGCCGAAGC
CCCAGGACAGGACGGGAAAGGCGGTTGGCGGTAGTATCGTGTTGTCGTTGATTTGAAAAA
AAGCAAACGAAATTGATGTCTT

consensusID : consensus_8338#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 618
fasta sequence 
                              [CCGCGGACGCGTGGGCGAGAACGAACACGAATATTGCGGGCACACACGCGGTGATGATAGCAAGGACACTGCTTTTGAGGGTGTGTGTATGTGTTGTCGGTATATTTTTGTAAAGGTGAAGAGATAAGGCGAAACAAAACCCCCGACACACAACACTGGCGCTGTGTTTGTATAGCGTCACAGCCGGAACCGGTTCGCACAGAGAGAGACAGAGAGAGCGGATGGTTGAGCTGCTGAACACTGCGCGCCTTTGTTCGAAGCACACACTGCAGTGGTAGTAGTAGGCCATGGAAGCAGGTGTAGTGTGCACTTGTCAGTCAATTGATGAGTTCAGTTTCGGCTGCTGCTGCTGCCGATTGACGCCCTTTTACGTTTAGTGCAATAGAGTTTATCCTTTTCTGCGAGTCCGCCTTTTTTCTTACCGCGAACCGTCGTGCCGTCATCATTATTTCTATCAAAATTTCGCGCGTGTATGTGTGTTTGTATGTGCGTATGATAAGCCGCGTGCGTGTGTGTGTGTGTGTTTTGTACTGAGATTTGACTTTGACGTGGTGTGCACAACAGCATATCATCCCACTCTTCAGTCCCCGTTCTCCACTTGATGATGGCGTTCCAACA]

[+] EMBL BM582607             [CCGCGGACGCGTGGGCGAGAACGAACACGAATATTGCGGGCACACACGCGGTGATGATAGCAAGGACACTGCTTTTGAGGGTGTGTGTATGTGTTGTCGGTATATTTTTGTAAAGGTGAAGAGATAAGGCGAAACAAAACCCCCGACACACAACACTGGCGCTGTGTTTGTATAGCGTCACAGCCGGAACCGGTTCGCACAGAGAGAGACAGAGAGAGCGGATGGTTGAGCTGCTGAACACTGCGCGCCTTTGTTCGAAGCACACACTGCAGTGGTAGTAGTAGGCCATGGAAGCAGGTGTAGTGTGCACTTGTCAGTCAATTGATGAGTTCAGTTTCGGCTGCTGCTGCTGCCGATTGACGCCCTTTTACGTTTAGTGCAATAGAGTTTATCCTTTTCTGCGAGTCCGCCTTTTTTCTTACCGCGAACCGTCGTGCCGTCATCATTATTTCTATCAAAATTTCGCGCGTGTATGTGTGTTTGTATGTGCGTATGATAAGCCGCGTGCGTGTGTGTGTGTGTGTTTTGTACTGAGATTTGACTTTGACGTGGTGTGCACAACAGCATATCATCCCACTCTTCAGTCCCCGTTCTCCACTTGATGATGGCGTTCCAACA]




>consensus_8338#3
CCGCGGACGCGTGGGCGAGAACGAACACGAATATTGCGGGCACACACGCGGTGATGATAG
CAAGGACACTGCTTTTGAGGGTGTGTGTATGTGTTGTCGGTATATTTTTGTAAAGGTGAA
GAGATAAGGCGAAACAAAACCCCCGACACACAACACTGGCGCTGTGTTTGTATAGCGTCA
CAGCCGGAACCGGTTCGCACAGAGAGAGACAGAGAGAGCGGATGGTTGAGCTGCTGAACA
CTGCGCGCCTTTGTTCGAAGCACACACTGCAGTGGTAGTAGTAGGCCATGGAAGCAGGTG
TAGTGTGCACTTGTCAGTCAATTGATGAGTTCAGTTTCGGCTGCTGCTGCTGCCGATTGA
CGCCCTTTTACGTTTAGTGCAATAGAGTTTATCCTTTTCTGCGAGTCCGCCTTTTTTCTT
ACCGCGAACCGTCGTGCCGTCATCATTATTTCTATCAAAATTTCGCGCGTGTATGTGTGT
TTGTATGTGCGTATGATAAGCCGCGTGCGTGTGTGTGTGTGTGTTTTGTACTGAGATTTG
ACTTTGACGTGGTGTGCACAACAGCATATCATCCCACTCTTCAGTCCCCGTTCTCCACTT
GATGATGGCGTTCCAACA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8338#1      ACTGTGATGTGTCATCACGANGAAGAATCCCCGCGCGNTTACNGAATGTGAATTTTGTAG 60
consensus_8338#3      ------------------------------------------------------------
consensus_8338#0      ------------------------------------------------------------
consensus_8338#2      ------------------------------------------------------------
                                                                                  

consensus_8338#1      TTTGTAATTGGGAAACGACTGGCTGGTGGGAAGGAAAGAATTTGCGAGAGAGAGAGAGAG 120
consensus_8338#3      ------------------------------------------------------------
consensus_8338#0      -----------------------------------------------------CTTGTGT 7
consensus_8338#2      ------------------------------------------------------------
                                                                                  

consensus_8338#1      AGAAAAGAGAAGCAAACCCAACATATTATACACGTACATTTATATATAACTTATACAAGA 180
consensus_8338#3      ------------------------------------------------------------
consensus_8338#0      GGGGTTGAGCTTTCCAACGGCCAATCCAATGGAGGAAAGAGAGAGAGAGAGAGATAGAGG 67
consensus_8338#2      ------------------------------------------------------------
                                                                                  

consensus_8338#1      AAAAATCAAGCTAAAGCTAAAAAACCACCATTATACCTACCATACACACCCCACCACATG 240
consensus_8338#3      ------------------------------------------------------------
consensus_8338#0      AAGGTCGTGCTCTAGTTCATTCATGTTGTGTTCGTTTTGTTTTAATAATTTAAAAATATA 127
consensus_8338#2      -------------------------------------------------CCGCGGACGCG 11
                                                                                  

consensus_8338#1      CGGTCATTTCGGTCACACATTTAGCGAGAACGAACACGAATATTGCGGGCACACACGCGG 300
consensus_8338#3      --------CCGCGGACGCGTG-GGCGAGAACGAACACGAATATTGCGGGCACACACGCGG 51
consensus_8338#0      AAACTGTTTATTTTATTCCTA---CCAACACAACCATCTGTGTCGCAAGGA-ACAGGCGT 183
consensus_8338#2      TGG--GTTTATTTTATTCCTA---CCAACACAACCATCTGTGTCGCAAGGA-ACAAGCGT 65
                                    *  * *    * *  ** * **    * * **  * * *** *** 

consensus_8338#1      TGATGATAGCAAG-GACACTGCTTTTGAGGGTGTGTGTATGTGTTGTCGGTATATTTTTG 359
consensus_8338#3      TGATGATAGCAAG-GACACTGCTTTTGAGGGTGTGTGTATGTGTTGTCGGTATATTTTTG 110
consensus_8338#0      TAAACTGCGTAAATGGCGCCGTAATGAGAAAGGCTTGAAGGTGGTA---GTGTGCTGTAG 240
consensus_8338#2      TAAACTGCGTAAATGGCGCCGTAATGAGAAATGCTTGAAGGTGGTA---GTGTGCCGTAG 122
                      * *     * **  * * * *   *       *  ** * *** *    ** *    * *

consensus_8338#1      TAAAGGTGAAGAGATAAGGCGAAAC----AAAACCCCCGACACACAACACTGGCGCTGTG 415
consensus_8338#3      TAAAGGTGAAGAGATAAGGCGAAAC----AAAACCCCCGACACACAACACTGGCGCTGTG 166
consensus_8338#0      -AGAGG---GACCGTAAGGAGAAGTTCAGAAAAGGCCCAGTAGATTGAGTTGAGG----G 292
consensus_8338#2      -AGAGGAGGGACCGTAAGGAGACGTTCAGAAAAGGCCCAGTAGATTGAGTTGAGG----G 177
                       * ***        ***** **       ****  ***   * *      **  *    *

consensus_8338#1      TTTGTATAGCGTCACAGCCGGAACCGGTTCGCACAGAGAGAGTGAG--------GATGGT 467
consensus_8338#3      TTTGTATAGCGTCACAGCCGGAACCGGTTCGCACAGAGAGAGACAGAGAGAGCGGATGGT 226
consensus_8338#0      GTTTTGAGCTTTCTTATCC--TATTTTCTCCCTTGTAGATATGTGA--------TTTTCT 342
consensus_8338#2      TTTTTGAGCTTTCTTATCC--TATTTTCTCCCTTGTAGATATGTGA--------TTTTCT 227
                       ** *      **  * **   *     ** *    *** *               *  *

consensus_8338#1      TGAGCTGCTGAACGCCGCGCGCCTTTGTTCGAAGCACACACTGCAGTGGTCGTATTAGTA 527
consensus_8338#3      TGAGCTGCTGAACACTGCGCGCCTTTGTTCGAAGCACACACTGCAGTGGT---------A 277
consensus_8338#0      TTACCCCCTCTACCCCATTTTCAATCGTTACATCTTGCCACCTTTTTGTTAGTTT---TG 399
consensus_8338#2      TTACCCCCTCTACCCCATTTTCAATCGTTACATCTTGCCACCTTTTTGTTAGTTT---TG 284
                      * * *  **  ** *      *  * ***  *      ***     ** *          

consensus_8338#1      GTAGTAGGCCATGGAAGCAGGTGTAGTGTGCACTTGTCAGTCAATTGATGAGTTCAGTTT 587
consensus_8338#3      GTAGTAGGCCATGGAAGCAGGTGTAGTGTGCACTTGTCAGTCAATTGATGAGTTCAGTTT 337
consensus_8338#0      TGGTTTTGTTGTGTAA--AGGTGTTAACCACACCC-TCTCTCTCTTTTTGTTTTCCCGAT 456
consensus_8338#2      GGGTTTTGTTGTGTAA--AGGTGTTAACCACACCC-TCTCTCTCTT--TGTTTTCCCGAT 339
                          *  *   ** **  ******      ***   **  **  **  **  ***    *

consensus_8338#1      CGGCTGCTGCTGCTGCCGATTGACGCCCTTTTACGTTTAGTGCAATAGAGTTTATCCTTT 647
consensus_8338#3      CGGCTGCTGCTGCTGCCGATTGACGCCCTTTTACGTTTAGTGCAATAGAGTTTATCCTTT 397
consensus_8338#0      -GGTGCTTTTAGTTGCTGAGTAGTTTTGGTTT-TAAGAAGAACAACAAGGTTTGTGTTAA 514
consensus_8338#2      -GGTGCTTTTAGTTGCTGAGTAGTTTTGGTTT-TAAGAAGAACAACAAGGTTTGTGTTAA 397
                       **    *   * *** ** *        ***      **  *** *  **** *  *  

consensus_8338#1      TCTGCGAGTCCGCCTTTTTTCTTACCGCGAACCGTCGTGCCGTCATCA------------ 695
consensus_8338#3      TCTGCGAGTCCGCCTTTTTTCTTACCGCGAACCGTCGTGCCGTCATCATTATTTCTATCA 457
consensus_8338#0      TTTTATTTCTTCCAATTTCTCGGAACACCGAACATGGATCGATGGATTTCTTTACATTTA 574
consensus_8338#2      TTTTATTTAT-CCAATTTCTCGGAACACCGAACATGGATCGATGGATTTCTTTACATTTA 456
                      * *         *  *** **  * * *  * * * *  *  *                 

consensus_8338#1      ------------------------------------------------------------
consensus_8338#3      AAATTTCGCG-CGTGTATGTGTGTTTGTATGTGCGTATGATAAGCCGCGTGCGTGTGTGT 516
consensus_8338#0      AACGTGGATGATGATGTTACGGGGCAGGAAACGACGCAAAGAGGCATGGAAATAGCTTGT 634
consensus_8338#2      AACGTGCATGATGAGGTTACGGGGCAGAAAACGACGCAAAGAGGCAAGGAAATAGCTTGT 516
                                                                                  

consensus_8338#1      ------------------------------------------------------------
consensus_8338#3      GTGTGTGTTTTGTACTGAGATTTGACTTTGACGTGGTGTGCACAACAGCATATCATCCCA 576
consensus_8338#0      ACTTAAGTAGGGACTAGCCGAAGCCCCAGGACAGGACGGGAAAGGCGGTTGGCGGTAGTA 694
consensus_8338#2      ACTTAAGTAGGGACTAGCCGAAGCCCCAGGACAGGACGGGAAAGGCGGTTGGCGGTAGTA 576
                                                                                  

consensus_8338#1      ------------------------------------------------------------
consensus_8338#3      CTCTTCAGTCCCCGTTCTCCACTTGATGATGGCGTTCCAACA------------------ 618
consensus_8338#0      TCGTGT-GTCGTTGATTTGAAGAAAAAAAGCAAACGAAATTGATGTCTTTTAAGACGAAG 753
consensus_8338#2      TCGTGTTGTCGTTGATTTGAA---AAAAAGCAAACGAAATTGATGTCTT----------- 622
                                                                                  

consensus_8338#1      ------------------------------------------------------------
consensus_8338#3      ------------------------------------------------------------
consensus_8338#0      CGATGCCGGAGAAACATAATCAATTAATCGTGTCGTGTATACAGTTTTCTTATATAGTTT 813
consensus_8338#2      ------------------------------------------------------------
                                                                                  

consensus_8338#1      ------------------------------------------------------------
consensus_8338#3      ------------------------------------------------------------
consensus_8338#0      TTAAACTCCCCGCCCCCGCATTATAGTCAAATGTGCGCTGGCGGCGTGTCTCTACTACTA 873
consensus_8338#2      ------------------------------------------------------------
                                                                                  

consensus_8338#1      ------------------------------------------------------------
consensus_8338#3      ------------------------------------------------------------
consensus_8338#0      CTATTACTACTACTATTACTATTACACGATATCATTATGGTTTCTTACTTTCATTCGTTT 933
consensus_8338#2      ------------------------------------------------------------
                                                                                  

consensus_8338#1      ------------------------------------------------------------
consensus_8338#3      ------------------------------------------------------------
consensus_8338#0      TGGGTTGTTTTTTTTATCTTTAACTAAGTGCAGCGTGAACTCTAAACTGTATGTGTTAGT 993
consensus_8338#2      ------------------------------------------------------------
                                                                                  

consensus_8338#1      ------------------------------------------------------------
consensus_8338#3      ------------------------------------------------------------
consensus_8338#0      ACACCTTGAACGAAGCAGAAAAAAGAAGAAAAAGAAGAAGAAGATTTCATTACGATGTCG 1053
consensus_8338#2      ------------------------------------------------------------
                                                                                  

consensus_8338#1      ------------------------------------------------------------
consensus_8338#3      ------------------------------------------------------------
consensus_8338#0      AACAAAGCATGATAACAGAAACAAAGGAAGAAGCCCCGCGCGTTTACCGAATGTGAATTT 1113
consensus_8338#2      ------------------------------------------------------------
                                                                                  

consensus_8338#1      ------------------------------------------------------------
consensus_8338#3      ------------------------------------------------------------
consensus_8338#0      TGTAGTTTGTAATTGGGAAACGACAGGCTGGTGGGAAGGAAAGAATTTGCCGCGAGAGAG 1173
consensus_8338#2      ------------------------------------------------------------
                                                                                  

consensus_8338#1      ------------------------------------------------------------
consensus_8338#3      ------------------------------------------------------------
consensus_8338#0      AGAGAGAGAAAAGAGAAGCCAACCCCACATATTATACACGTACATTTATATATAACTTAT 1233
consensus_8338#2      ------------------------------------------------------------
                                                                                  

consensus_8338#1      ------------------------------------------------------------
consensus_8338#3      ------------------------------------------------------------
consensus_8338#0      ACCAGAAAAAATCAAGCTAAAGCTAAAAAACCACCATTATACTTACCATACACCCCACCA 1293
consensus_8338#2      ------------------------------------------------------------
                                                                                  

consensus_8338#1      -
consensus_8338#3      -
consensus_8338#0      C 1294
consensus_8338#2      -


Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)