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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8385#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1038 fasta sequence
[CAACCTGACACATTACAATATATTTATTGCTTATCAATTAAAGCTGCACCCAATGGCTCGTATACCATTAGTTAGTGCGGTTGTGGAGGGCAGGCAGTATTACTCCTTGATTTGAGCTAGCTTCTCATCAACGTCGCGTACTATGTTCAGTATCGTTTGAGCCAACGGTTCACTACTGGCGGCTATAATATCTGGCTTCATAATGTCGTACTGTCCTCCTGTGATGCTAATAACCGTGCCGCCAGCTTCCTGGATCAGCAGCGCGCCTGCTGCAATGTCCCACGGTTTAAGATACTGTATGCTATAGGCATCGATCTGTCCGCTAGCGATGTATGCTAGTGAGAGAGCGGCGGAACCAAACGCACGCAATCCTACGCACTCCGCGATGAACCTCTGGCCCCGCTCAAACAGGGCCGCCCGTATCGGCTTATAGCTTCCGATGGAAAATTCATGTCCCACGAGGGCATCCTTCAGTTCCTTCGTGTTGCGCGTGTGGATCCGGGAACCGTTCAGGAATGACCCTTGCCCTTTAATGGCAGTGAATAGCTCATTGGCGGTTGGGTTCGCTATGATTGCGATCTGTAGTCCATGATTGACCGCCAGTGCGACAGAAATACACGTGAAGGGTACGCCTCGCACGAAGTTGACCGTGCCATCAATTGGATCAATTATCCACGTTGGCTCCGGTCCGAGAATCAGCTTGGCTCCACTAGCGAACGCCGATTCTTCTGCGCAAAATTTGTGATGTGGAAACTGTTGCCGAAGTCCCGCGATCAAAATGTCCTCCACTCGCTGGTCGTACACGGTCACCAGATCCCAATGTTTACCTTTCACCTCCACCTGCTTAGAAGCGGAGCGAAATCCCTCGAGCACTATT-TCGTTACACTGTTTCACCAATTCCAGCGCTGTTTCGAAGGCTGCCTTTATTTCGTTTTCGTCGCACATGATGGTACGCTGATAACGTGTTGTAGA--TTTTTTTT-TGAATTATGATAAACTGCGGACCCCCGGTATGTGCGACCGCTGCCGTTGCCTGCTTTA]
[+] EMBL CNS08SL8 [CAACCTGACACATTACAATATATTTATTGCTTATCAATTAAAGCTGCACCCAATGGCTCGTATACCATTAGTTAGTGCGGTTGTGGAGGGCAGGCAGTATTACTCCTTGATTTGAGCTAGCTTCTCATCAACGTCGCGTACTATGTTCAGTATCGTTTGAGCCAACGGTTCACTACTGGCGGCTATAATATCTGGCTTCATAATGTCGTACTGTCCTCCTGTGATGCTAATAACCGTGCCGCCAGCTTCCTGGATCAGCAGCGCGCCTGCTGCAATGTCCCACGGTTTAAGATACTGTATGCTATAGGCATCGATCTGTCCGCTAGCGATGTATGCTAGTGAGAGAGCGGCGGAACCAAACGCACGCAATCCTACGCACTCCGCGATGAACCTCTGGCCCCGCTCAAACAGGGCCGCCCGTATCGGCTTATAGCTTCCGATGGAAAATTCATGTCCCACGAGGGCATCCTTCAGTTCCTTCGTGTTGCGCGTGTGGATCCGGGAACCGTTCAGGAATGACCCTTGCCCTTTAATGGCAGTGAATAGCTCATTGGCGGTTGGGTTCGCTATGATTGCGATCTGTAGTCCATGATTGACCGCCAGTGCGACATAAATACACGTGAAGGGTACGCCTCGCACGAAGTTGACCGTGCCATCAATTGGATCAATTATCCACGTTGGCTCCGGTCCGAGAATCAGCTTGGCTCCACTAGCGAACGCCGATTCTTCTGCGCAAAATTTGTGATGTGGAAACTGTTGCCGAAGTCCCGCGATCAAAATGTCCTCCACTCGCTGGTCGTACACGGTCACCAGATCCCAATGTTTACCTTTCACCTCCACCTGCTTAGAAGCGGAGGGAAATCCCTCGAGCACTATT TCGTTACACTGTTTCACCAATTCCAGCGCTGTTTCGAAGGCTGCCTTTATTTCGTTTTCGTCGCACATGATGGTACGCTGATAACGTGTTGTAGA TTTTTTTT TGAATTATGATAAACTGCG ]
[+] EMBL CNS08V1C [ CACATTACAATATATTTATTGCTTATCAATTAAAGCTGCACCCAATGGCTCGTATACCATTAGTTAGTGCGGTTGTGGAGGGCAGGCAGTATTACTCCTTGATTTGAGCTAGCTTCTCATCAACGTCGCGTACTATGTTCAGTATCGTTTGAGCCAACGGTTCACTACTGGCGGCTATAATATCTGGCTTCATAATGTCGTACTGTCCTCCTGTGATGCTAATAACCGTGCCGCCAGCTTCCTGGATCAGCAGCGCGCCTGCTGCAATGTCCCACGGTTTAAGATACTGTATGCTATAGGCATCGATCTGTCCGCTAGCGATGTATGCTAGTGAGAGAGCGGCGGAACCAAACGCACGCAATCCTACGCACTCCGCGATGAACCTCTGGCCCCGCTCAAACAGGGCCGCCCGTATCGGCTTATAGCTTCCGATGGAAAATTCATGTCCCACGAGGGCATCCTTCAGTTCCTTCGTGTTGCGCGTGTGGATCCGGGAACCGTTCAGGAATGACCCTTGCCCTTTAATGGCAGTTAATAGCTCATTGGCGGTTGGGTTCGCTATGATTGCGATCTGTAGTCCATGATTGACCGCCAGTGCGACAGAAATACACGTGAAGGGTACGCCTCGCACGAAGTTGACCGTGCCATCAATTGGATCAATTATCCACGTTGGCTCCGGTCCGAGAATCAGCTTGGCTCCACTAGCGAACGCCGATTCTTCTGCGCAAAATTTGTGATGTGGAAACTGTTGCCGAAGTCCCGCGATCAAAATGTCCTCCACTCGCTGGTCGTACACGGTCACCAGATCCCAATGTTTACCTTTCACCTCCACCTGCTTAGAAGCGGAGGGAAATCCCTCGAGCACTATT TCGTTACACTGTTTCACCAATTCCAGCGCTGTTTCGAAGGCTGCCTTTATTTCGTTTTCGTCGCACATGATGGTACGCTGATAACGTGTTGTAGA T ]
[-] EMBL CNS08V1B [ TGCACCCAATGGCTCGTATACCATTAGTTAGTGCGGTTGTGGAGGGCAGGCAGTATTACTCCTTGATTTGAGCTAGCTTCTCATCAACGTCGCGTACTATGTTCAGTATCGTTTGAGCCAACGGTTCACTACTGGCGGCTATAATATCTGGCTTCATAATGTCGTACTGTCCTCCTGTGATGCTAATAACCGTGCCGCCAGCTTCCTGGATCAGCAGCGCGCCTGCTGCAATGTCCCACGGTTTAAGATACTGTATGCTATAGGCATCGATCTGTCCGCTAGCGATGTATGCTAGTGAGAGAGCGGCGGAACCAAACGCACGCAATCCTACGCACTCCGCGATGAACCTCTGGCCCCGCTCAAACAGGGCCGCCCGTATCGGCTTATAGCTTCCGATGGAAAATTCATGTCCCACGAGGGCATCCTTCAGTTCCTTCGTGTTGCGCGTGTGGATCCGGGAACCGTTCAGGAATGACCCTTGCCCTTTAATGGCAGTGAATAGCTCATTGGCGGTTGGGTTCGCTATGATTGCGATCTGTAGTCCATGATTGACCGCCAGTGCGACAGAAATACACGTGAAGGGTACGCCTCGCACGAAGTTGACCGTGCCATCAATTGGATCAATTATCCACGTTGGCTCCGGTCCGAGAATCAGCTTGGCTCCACTAGCGAACGCCGATTCTTCTGCGCAAAATTTGTGATGTGGAAACTGTTGCCGAAGTCCCGCGATCAAAATGTCCTCCACTCGCTGGTCGTACACGGTCACCAGATCCCAATGTTTACCTTTCACCTCCACCTGCTTAGAAGCGGAGCGAAATCCCTCGAGCACTATTgtc ]
[-] EMBL CNS08SL7 [ ATGGCTCGTATACCATTAGTTAGTGCGGTTGTGGAGGGCAGGCAGTATTACTCCTTGATTTGAGCTAGCTTCTCATCAACGTCGCGTACTATGTTCAGTATCGTTTGAGCCAACGGTTCACTACTGGCGGCTATAATATCTGGCTTCATAATGTCGTACTGTCCTCCTGTGATGCTAATAACCGTGCCGCCAGCTTCCTGGATCAGCAGCGCGCCTGCTGCAATGTCCCACGGTTTAAGATACTGTATGCTATAGGCATCGATCTGTCCGCTAGCGATGTATGCTAGTGAGAGAGCGGCGGAACCAAACGCACGCAATCCTACGCACTCCGCGATGAACCTCTGGCCCCGCTCAAACAGGGCCGCCCGTATCGGCTTATAGCTTCCGATGGAAAATTCATGTCCCACGAGGGCATCCTTCAGTTCCTTCGTGTTGCGCGTGTGGATCCGGGAACCGTTCAGGAATGACCCTTGCCCTTTAATGGCAGTGAATAGCTCATTGGCGGTTGGGTTCGCTATGATTGCGATCTGTAGTCCATGATTGACCGCCAGTGCGACAGAAATACACGTGAAGGGTACGCCTCGCACGAAGTTGACCGTGCCATCAATTGGATCAATTATCCACGTTGGCTCCGGTCCGAGAATCAGCTTGGCTCCACTAGCGAACGCCGATTCTTCTGCGCAAAATTTGTGATGTGGAAACTGTTGCCGAAGTCCCGCGATCAAAATGTCCTCCACTCGCTGGTCGTACACGGTCACCAGATCCCAATGTTTACCTTTCACCTCCACCTGCTTAGAAGCGGAGCGAAATCCCTCGAGCACTATTGTCGTTACACTGTTTCACCAATTCCAGCGCTGTTTCGAAGGCTGCCTTTATTTCGTTTTCGTCGCACATGATGGTACGCTGATAACGTGTTGTAGA TTTTTTTT TGAATTATGATAAACTGCGGACCCCCGGTATGTGCGACCGCTGCCGTTGCCTGCTTTA]
[+] EMBL CNS08LS0 [ GGCAGTATTACTCCTTGATTTGAGCCAGCTTCTCATCAACGTCGCGTACTATGTTCAGTATCGTTTGAGCCAACGGTTCACTACTGGCGGCTATAATATCTGGCTTCATAATGTCGTACTGTCCTCCTGTTATGCTAATAACCGTGCCGCCAGCTTCCTGGATCAGCAGCCCGCCTTCCGCAATGTCCCACGGTTTAAGAAACTGTATGCTATAGGCATCGATCTGTCCGCTAGCGATGTA ]
[-] EMBL CNS08LRZ [ ATGTTCAGTATCGTTTGAGCCAACGGTTCACAACTGGCGGCTATAATATCTGGCTTCATAATGTCGAACTGTCCTCCTGTGATGCTAATAACCGTGCCGCCAGCTTCCTGGATCAGCAGCGCGCCTGCTGCAATGTCCCACGGTTTAAGATACTGTATGCTATAGGCATCGATCTGTCCGCTAGCGATGTATGCTAGTGAGAGAGCGGCGGAACCAAACGCACGCAATCCTACGCACTCCGCGATGAACCTCTGGCCCCGCTCAAACAGGGCCGCCCGTATCGGCTTATAGCTTCCGATGGAAAATTCATGTCCCACGAGGGCATCCTTCAGTTCCTTCGTGTTGCGCGTGTGGATCCGGGAACCGTTCAGGAATGACCCTTGCCCTTTAATGGCAGTGAATAGCTCATTGGCGGTTGGGTTCGCTATGATTGCGATCTGTAGTCCATGATTGACCGCCAGTGCGACAGAAATACACGTGAAGGGTACGCCTCGCACGAAGTTGACCGTGCCATCAATTGGATCAATTATCCACGTTGGCTCCGGTCCGAGAATCAGCTTGGCTCCACTAGCGAACGCCGATTCTTCTGCGCAAAATTTGTGATGTGGAAACTGTTGCCGAAGTCCCGCGATCAAAATGTCCTCCACTCGCTGGTCGTACACGGTCACCAGATCCCAATGTTTACCTTTCACCTCCACCTGCTTAGAAGCGGAGCGAAATCCCTCGAGCACTATT TCGTTACACTGTTTCACCAATTCCAGCGCTGTTTCGAAGGCTGCCTTTATTTCGTTTTCGTCGCACATGATGGTACGCTGATAACGTGTTGTAGA TTTTTTTT TGAATTATGATAAACTGCGGACCCCCGGTATGTGCGACCGCTGCCGTTGCa ]
[-] EMBL BM637589 [ GGCATCGATCTGTCCGCTAGCGATGTATGCTAGTGAGAGAGCGGCGGAACCAAACGCACGCAATCCTACGCACTCCGCGATGAACCTCTGGCCCCGCTCAAACAGGGCCGCCCGTATCGGCTTATAGCTTCCGATGGAAAATTCATGTCCCACGAGGGCATCCTTCAGTTCCTTCGTGTTGCGCGTGTGGATCCGGGAACCGTTCAGGAATGACCCTTGCCCTTTAATGGCAGTGAATAGCTCATTGGCGGTTGGGTTCGCTATGATTGCGATCTGTAGTTCATGATTGACCGCCAGTGCGACAGAAATACACGTGAAGGGTACGCCTCGCACGAAGTTGACCGTGCCATCAATTGGATCAATTATCCACGTTGGCTCCGGTCCGAGAATCAGCTTGGCTCCACTAGCGAACGCCGATTCTTCTGCGCAAAATTTGTGATGTGGAAACTGTTGCCGAAGTCCCGCGATCAAAATGTCCTCCACTCGCTGGTCGTACACGGTCACCAGATCCCAATGTTTACCTTTCACCTCCACCTGCTTAGAAGCGGAGCGAAATCCCTCGAGTACTATT TCGTTACACTGTTTCACCAATTCCAGCGCTGTTTCGAAGGCTGCCTTTATTTCGTTTTCGTCGCACATGATGGTACGCTGATAACGTGTTGcgg ]
[-] EMBL BX606455 [ AGCGGCGAAACCAAACGCACGCAATCCTACGCACTCCGCGATGAACCTCTGGCCCCGCTCAAACAGGGCCGCCCGTATCGGCTTATAGCTTCCGATGGAAAATTCATGTCCCACGAGGGCATCCTTCAGTTCCTTCGTGTTGCGCGTGTGGATCCGGGAACCGTTCAGGAATGACCCTTGCCCTTTAATGGCAGTGAATAGCTCATTGGCGGTTGGGTTCGCTATGATTGCGATCTGTAGTTCATGATTGACCGCCAGTGCGACAGAAATACACGTGAAGGGTACGCCTCGCACGAAGTTGACCGTGCCATCAATTGGATCAATTATCCACGTTGGCTCCGGTCCGAGAATCAGCTTGGCTCCACTAGCGAACGCCGATTCTTCTGCGCAAAATTTGTGATGTGGAAACTGTTGCCGAAGTCCCGCGATCAAAATGTCCTCCACTCGCTGGTCGTACACGGTCACCAGATCCCAATGTTTACCTTTCACCTCCACCTGCTTAGAAGCGGAGCGAAATCCCTCGAGCACTATT TCGTTACACTGTTTCACCAATTCCAGCGCTGTTTCGAAGGCTGCCTTTATTTCGTTTTCGTCGGACATGATGGTACGCTGATAACGTGTTGTAGATTTTTTTTTT TGAATTATGATAAACTGCGTACCCCCGGTATGTGCGACCGCT ]
[-] EMBL BX619436 [ ATCCGGGAACCGTTCAGGNATGACCCTTGCCCTTTAATGGCAGTGAATAGCTCATTGGCGGTTGGGTTCGCTATGATTGCGATCTGTAGTCCATGATTGACCGCCAGTGCGACAGAAATACACGTGAAGGGTACGCCTCGCACGAAGTTGACCGTGCCATCAATTGGATCAATTATCCACGTTGGCTCCGGTCCGAGAATCAGCTTGGCTCCACTAGCGAACGCCGATTCTTCTGCGCAAAATTTGTGATGTGGAAACTGTTGCCGAAGTCCCGCGATCAAAATGTCCTCCACTCGCTGGTCGTACACGGTCACCAGATCCCAATGTTTACCTTTCACCTCCACCTGCTTAGAAGCGGAGCGAAATCCCTCGAGCACTATT TCGTTACACTGTTTCACCAATTCCAGCGCTGTTTCGAAGGCTGCCTTTATTTCGTTTTCGTCGCACATGATGGTACGCTGATAACGTGTTGTAGA TTTTTTTTCTGAATTATGATAAACTGCGTACCCCCGGTATGTGCGACTGCTG ]
consensusID : consensus_8385#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 454 fasta sequence
[TGNATAGGCTCATTGGCGTTTGGTTTCGCTATGATTGCGATCTGTAGTTCATGATTGACCGCCAGTGCGACAGAAATACACGTGAAGGTACGCCTCGCACGAAGTTGACCGTGCCATCAAATTGGATCAAATTATCCACGTTGGCTCCGGTCCGAGAATCAGCTTGGCTCCACTAGCGAACGGCCAGATTCTTCTGCGCAAAATTTGTGATGTGGAAACTGTGCCGAAGTCCCGCGATCAAAATGTCCCCACTCCTGTCGTACACGGTCACCAGATCCCAATGTTTACCTTTCACCTCCACCTGCTTAGAAGCGGAGCGAAATCCCTCGAGTACTATTTCGTTACACTGTTTCACCAATTCCAGCGCTGTTTCGAAGCTGCCTTTATTTCGTTTTCGTCGCACATGATGTACGCTGATAACGTGTTGTAGATTTTTTTAACCGCGGGGATTCTG]
[-] EMBL AL929960 [TGNATAGGCTCATTGGCGTTTGGTTTCGCTATGATTGCGATCTGTAGTTCATGATTGACCGCCAGTGCGACAGAAATACACGTGAAGGTACGCCTCGCACGAAGTTGACCGTGCCATCAAATTGGATCAAATTATCCACGTTGGCTCCGGTCCGAGAATCAGCTTGGCTCCACTAGCGAACGGCCAGATTCTTCTGCGCAAAATTTGTGATGTGGAAACTGTGCCGAAGTCCCGCGATCAAAATGTCCCCACTCCTGTCGTACACGGTCACCAGATCCCAATGTTTACCTTTCACCTCCACCTGCTTAGAAGCGGAGCGAAATCCCTCGAGTACTATTTCGTTACACTGTTTCACCAATTCCAGCGCTGTTTCGAAGCTGCCTTTATTTCGTTTTCGTCGCACATGATGTACGCTGATAACGTGTTGTAGATTTTTTTAACCGCGGGGATTCTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8385#0 CAACCTGACACATTACAATATATTTATTGCTTATCAATTAAAGCTGCACCCAATGGCTCG 60
consensus_8385#1 ------------------------------------------------------------
consensus_8385#0 TATACCATTAGTTAGTGCGGTTGTGGAGGGCAGGCAGTATTACTCCTTGATTTGAGCTAG 120
consensus_8385#1 ------------------------------------------------------------
consensus_8385#0 CTTCTCATCAACGTCGCGTACTATGTTCAGTATCGTTTGAGCCAACGGTTCACTACTGGC 180
consensus_8385#1 ------------------------------------------------------------
consensus_8385#0 GGCTATAATATCTGGCTTCATAATGTCGTACTGTCCTCCTGTGATGCTAATAACCGTGCC 240
consensus_8385#1 ------------------------------------------------------------
consensus_8385#0 GCCAGCTTCCTGGATCAGCAGCGCGCCTGCTGCAATGTCCCACGGTTTAAGATACTGTAT 300
consensus_8385#1 ------------------------------------------------------------
consensus_8385#0 GCTATAGGCATCGATCTGTCCGCTAGCGATGTATGCTAGTGAGAGAGCGGCGGAACCAAA 360
consensus_8385#1 ------------------------------------------------------------
consensus_8385#0 CGCACGCAATCCTACGCACTCCGCGATGAACCTCTGGCCCCGCTCAAACAGGGCCGCCCG 420
consensus_8385#1 ------------------------------------------------------------
consensus_8385#0 TATCGGCTTATAGCTTCCGATGGAAAATTCATGTCCCACGAGGGCATCCTTCAGTTCCTT 480
consensus_8385#1 ------------------------------------------------------------
consensus_8385#0 CGTGTTGCGCGTGTGGATCCGGGAACCGTTCAGGAATGACCCTTGCCCTTTAATGGCAGT 540
consensus_8385#1 -----------------------------------------------------------T 1
*
consensus_8385#0 GAATAG-CTCATTGGCGGTTGGGTTCGCTATGATTGCGATCTGTAGTCCATGATTGACCG 599
consensus_8385#1 GNATAGGCTCATTGGCGTTTGGTTTCGCTATGATTGCGATCTGTAGTTCATGATTGACCG 61
* **** ********** **** ************************ ************
consensus_8385#0 CCAGTGCGACAGAAATACACGTGAAGGGTACGCCTCGCACGAAGTTGACCGTGCCATCAA 659
consensus_8385#1 CCAGTGCGACAGAAATACACGTGAAGG-TACGCCTCGCACGAAGTTGACCGTGCCATCAA 120
*************************** ********************************
consensus_8385#0 -TTGGATCAA-TTATCCACGTTGGCTCCGGTCCGAGAATCAGCTTGGCTCCACTAGCGAA 717
consensus_8385#1 ATTGGATCAAATTATCCACGTTGGCTCCGGTCCGAGAATCAGCTTGGCTCCACTAGCGAA 180
********* *************************************************
consensus_8385#0 CGCC--GATTCTTCTGCGCAAAATTTGTGATGTGGAAACTGTTGCCGAAGTCCCGCGATC 775
consensus_8385#1 CGGCCAGATTCTTCTGCGCAAAATTTGTGATGTGGAAACTGT-GCCGAAGTCCCGCGATC 239
** * ************************************ *****************
consensus_8385#0 AAAATGTCCTCCACTCGCTGGTCGTACACGGTCACCAGATCCCAATGTTTACCTTTCACC 835
consensus_8385#1 AAAATGTCC-CCACT--CCTGTCGTACACGGTCACCAGATCCCAATGTTTACCTTTCACC 296
********* ***** * ****************************************
consensus_8385#0 TCCACCTGCTTAGAAGCGGAGCGAAATCCCTCGAGCACTATTTCGTTACACTGTTTCACC 895
consensus_8385#1 TCCACCTGCTTAGAAGCGGAGCGAAATCCCTCGAGTACTATTTCGTTACACTGTTTCACC 356
*********************************** ************************
consensus_8385#0 AATTCCAGCGCTGTTTCGAAGGCTGCCTTTATTTCGTTTTCGTCGCACATGATGGTACGC 955
consensus_8385#1 AATTCCAGCGCTGTTTCGAAG-CTGCCTTTATTTCGTTTTCGTCGCACATGATG-TACGC 414
********************* ******************************** *****
consensus_8385#0 TGATAACGTGTTGTAGATTTTTTTTTGAATTATGATAAACTGCGGACCCCCGGTATGTGC 1015
consensus_8385#1 TGATAACGTGTTGTAGATTTTTTT---AACCGCGG-GGATTCTG---------------- 454
************************ ** * * * *
consensus_8385#0 GACCGCTGCCGTTGCCTGCTTTA 1038
consensus_8385#1 -----------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||