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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8415#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 920 fasta sequence
[ACACCATCCNGAGGCAAGAATCCCCCGAGTGTTCTGGTTCAACTACACCTGGAAGATGTAATCTTTAGCACTGGGAAAGAAAACTTAACTGAAAATGCTTGCCTGTAAGACCTGTCAATGAAGATACTAGCTGCAGATGCTAACCTGCTGGCTCTGCATAAATACCCCAATAAACAGACCATTTTGGGGCTGGGTGAACATGATGTTCAACCGGGTCGATCGCGCTAGACTGAAGAAGGTTGGTCCCGACCGACTATATGTGCCGAATGGTTTGCTAAAGAATGGACGCGAAATGCAAAGTTCTGTCGAAGGACTGCCCTGTGTGCATTGTGCATTTTTAACGCACTTCCTGGACTGAGTCCTTGCCTGGTGCTAATGGAAGAACTCGATGGGACCGTGATTCGGGCATTAATGCCACATTTGGGTATCGATCATCTGGGAGCGGATTGAGTCGGCTCAGGANAGTNTGTCCTCCATAACTGTGTCTACATCGACAATCAAGCTCTGTGCGAAGCTGCGATACGTATGCCAATACGCTGGNGGAGTTGCCAAATTTCCAAGTGTGGCAATGTCACCGATGCCGGATTGCTACAGCTCAAACAGCTCCCTCAGCTACAACAGGTGACAAACGTTCGATTTGCCTGATGTGAAAAATATACAGGCAAGTGGAAAAAACGCTCAAACCAAGCACTTCCCAACTGCCAATTCGATATGNAGCCATAGCCACAAAACGTCGAGCATCTGTCACGTATACTTGGTACCATCCTAGCGCAATCGCCGCCATACAGGTCAAACTTTAATNAACNCNATNACGCACAAGAGCATGTAGTCGAACCCCAAGTGCACAACACACAACAACAANCANNACAACANCACACAGGGCNATGTTGACGAACCCGCAAAGCNNCATACCCCATATA]
[+] EMBL AL930745 [ACACCATCCNGAGGCAAGAATCCCCCGAGTGTTCTGGTTCAACTACACCTGGAAGATGTAATCTTTAGCACTGGGAAAGAAAACTTAACTGAAAATGCTTGCCTGTAAGACCTGTCAATGAAGATACTAGCTGCAGATGCTAACCTGCTGGCTCTGCATAAATACCCCAATAAACAGACCATTTTGGGGCTGGGTGAACATGATGTTCAACCGGGTCGATCGCGCTAGACTGAAGAAGGTTGGTCCCGACCGACTATATGTGCCGAATGGTTTGCTAAAGAATGGACGCGAAATGCAAAGTTCTGTCGAAGGACTGCCCTGTGTGCATTGTGCATTTTTAACGCACTTCCTGGACTGAGTCCTTGCCTGGTGCTAATGGAAGAACTCGATGGGACCGTGATTCGGGCATTAATGCCACATTTGGGTATCGATCATCTGGGAGCGGATTGAGTCGGCTCAGGANAGTNTGTCCTCCATAACTGTGTCTACATCGACAATCAAGCTCTGTGCGAAGCTGCGATACGTATGCCAATACGCTGGNGGAGTTGCCAAATTTCCAAGTGTGGCAATGTCACCGATGCCGGATTGCTACAGCTCAAACAGCTCCCTCAGCTACAACAGGTGACAAACGTTCGATTTGCCTGATGTGAAAAATATACAGGCAAGTGGAAAAAACGCTCAAACCAAGCACTTCCCAACTGCCAATTCGATATGNAGCCATAGCCACAAAACGTCGAGCATCTGTCACGTATACTTGGTACCATCCTAGCGCAATCGCCGCCATACAGGTCAAACTTTAATNAACNCNATNACGCACAAGAGCATGTAGTCGAACCCCAAGTGCACAACACACAACAACAANCANNACAACANCACACAGGGCNATGTTGACGAACCCGCAAAGCNNCATACCCCATATA]
consensusID : consensus_8415#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 800 fasta sequence
[GGCAGATCGGCACGTGNACACAATTGGCTGCCGGTTCAACTACACCGGAAGATGTAATCTTTGGCACGGGAAAGAAAACTTAACGAAAATGCTTACCGTAAGACCGTTAACGAAGTTACTAGCGCAGATGCAACCGCTGGCTCTGCAAAAAACCCCAATAAACAGACCATTTTGGGGCTGGGTGAACATGATGTTCAACCGGGTCGATCGCGCTAGACTGAAGAAGGTTGGCCCCGACCGACTTTGTGCCGAATGGTTGCTAAAGAATGGAGCGAAAGCAAAGTTTGTGAAGGACGCCCGTGTGCATGTGCATTTTAACGCACTTCCGGACGAGTCCTTGCCGGTGCTAATGGAAGAACTCGATGGGACGGATTCGGGCATAATGCACATTGGGTTCGATCATCTGGAAGGATTGAATCGGCTCAGGAAAGTTGTCCTCCATAACTGTGTCTACATCGACAATCAAGCTCTGTGGAA-GCTGCGATACGTTGCCAA-TAC-GCTGGAGGAG-TTGCAAATTT-CCA-AGTGTGGCA--ATGTCACCGA-TG-CCGGATTG-CTACAGCT-CAAA-C-AGCTCCCTCAGCT-ACAA-CAGGTGAAA---ACGTTCGAATTG-CCTGA-TGTGAA-AAATATACAGGAAGTGGAAAAAACGCTC-AAACAAGCACTTCCCAACTGCAAATTCGATATGAAGCCATAGAAAAAACGTCGAGATTGTACGTAGAATTGGTACCATCTAGCGCAATCGCCGCATACAGCGTCTAACTTAATAAAAATAGCACAGAGATGTGGTGACCCAGTGCAAAAAAAAAAAAAAA]
[+] EMBL BX468087 [GGCAGATCGGCACGTGNACACAATTGGCTG CGGTTCAACTACACCGGAAGATGTAATCTTTGGCACGGGAAAGAAAACTTAACGAAAATGCTTACCGTAAGACCGTTAACGAAGTTACTAGCGCAGATGCAACCGCTGGCTCTGCAAACAACCCCAATGAACAGACCATTTTGGGGCTGGGTGAACATGATGTTCAACCGGGTCGATCGCGCTAGACTGAAGAAGGTTGGTCCCGACCGACTTTGTGCCGAATGGTTGCTAAAGAATGGAGCGAAAGCAAAGTTTGTGAAGGACGCCCGTGTGCATGTGCATTTTAACGCACTTCCGGACGAGTCCTTGCCGGTGCTAATGGAAGAACTCGATGGGACGGATTCGGGCATAATGCACATTGGGTTCGATCATCTGGAGGGATTGAGTCGGCTCAGGAAAGTTGTCCTCCATAACTGTGTCTACATCGACAATCAAGCTCTGTGGAAGGCTGCGATACGTTGCCAANTACGGCTGGAGGAGNTTGCAAATTTCCCACAGTGTGGCAAGATGTCACCGANTGCCCGGATTGACTACAGCTCCAAANCAAATTCCCTCAGCTAACAACCAGGTGAAAAANACGTTCGATTTGACCTCACTGTGAACAAAAATAtccacg ]
[+] EMBL BM650256 [ ccgCACAATTGGCTGCCGGTTCAACTACACCGGAAGATGTAATCTTTGGCACGGGAAAGAAAACTTAACGAAAATGCTTACCGTAAGACCGTTAACGAAGTTACTAGCGCAGATGCAACCGCTGGCTCTGCAAAAAACCCCAATAAACAGACCATTTTGGGGCTGGGTGAACATGATGTTCAACCGGGTCGATCGCGCTAGACTGAAGAAGGTTGGCCCCGACCGACTTTGTGCCGAATGGTTGCTAAAGAATGGAGCGAAAGCAAAGTTTGTGAAGGACGCCCGTGTGCATGTGCATTTTAACGCACTTCCGGACGAGTCCTTGCCGGTGCTAATGGAAGAACTCGATGGGACGGATTCGGGCATAATGCACATTGGGTTCGATCATCTGGAAGGATTGAATCGGCTCAGGAAAGTTGTCCTCCATAACTGTGTCTACATCGACAATCAAGCTCTGTGGAA GCTGCGATACGTTGCCAA TAC GCTGGAGGAG TTGCAAATTT CCA AGTGTGGCA ATGTCACCGA TG CCGGATTG CTACAGCT CAAA C AGCTCCCTCAGCT ACAA CAGGTGAAA ACGTTCGAATTG CCTGA TGTGAA AAATATACAGGAAGTGGAAAAAACGCTC AAACAAGCACTTCCCAACTGCAAATTCGATATGAAGCCATAGAAAAAACGTCGAGATTGTACGTAGA ]
[+] EMBL BM577471 [ ccgGCCGGTTCAACTACACCGGAAGATGTAATCTTTAGCACGGGAAAGAAAACTTAACGAAAATGCTTGCCGTAAGACCGTCAATGAAGATACTAGCGCAGATGCAACCGCTGGCTCTGCATAAAACCCCAATAAACAGACCATTTTGGGGCTGGGTGAACATGATGTTCAACCGGGTCGATCGCGCTAGACTGAAGAAGGTTGGTCCCGACCGACTTTGTGCCGAATGGTTGCTAAAGAATGGAGCGAAAGCAAAGTTTGTGAAGGACGCCCGTGTGCATGTGCATTTTAACGCACTTCCGGACGAGTCCTTGCCGGTGCTAATGGAAGAACTCGATGGGACGGATTCGGGCATAATGCACATTGGGTTCGATCATCTGGAGGGATTGAGTCGGCTCAGGAAAGTTGTCCTCCATAACTGTGTCTACATCGACAATCAAGCTCTGTGGAA GCTGCGATACGTTGCCAA TAC GCTGGAGGAG TTGCAAATTT CCA AGTGTGGCA ATGTCACCGA TG CCGGATTG CTACAGCT CAAA C AGCTCCCTCAGCT ACAA CAGGTGAAA ACGTTCGATTTG CCTGA TGTGAA AAATATACAGGAAGTGGAAAAAACGCTC AAACAAGCACTTCCCAACTGCCAATTCGATATGAAGCCATAGAAAAAACGTCGAGATTGTACGTATAATTGGTACCATCTAGCG ]
[+] EMBL BX629067 [ TCAACTACACCGGAAGATGTAATCTTTGGCACGGGAAAGAAAACTTAACGAAAATGCTTACCGTAAGACCGTTAACGAAGTTACTAGCGCAGATGCAACCGCTGGCTCTGCAAACAACCCCAATGAACAGACCATTTTGGGGCTGGGTGAACATGATGTTCAACCGGGTCGATCGCGCTAGACTGAAGAAGGTTGGTCCCGACCGACTTTGTGCCGAATGGTTGCTAAAGAATGGAGCGAAAGCAAAGTTTGTGAAGGACGCCCGTGTGCATGTGCATTTTAACGCACTTCCGGACGAGTCCTTGCCGGTGCTAATGGAAGAACTCGATGGGACGGATTCGGGCATAATGCACATTGGGTTCGATCATCTGGAGGGATTGAGTCGGCTCAGGAAAGTTGTCCTCCATAACTGTGTCTACATCGACAATCAAGCTCTGTGGAA GCTGCGATACGTTGCCAA TAC GCTGGAGGAG TTGCAAATTT CCA AGTGTGGCA ATGTCACCGA TG CCGGATTG CTACAGCT CAAA C AACTCCCTCAGCT ACAA CAGGTGAAA ACGTTCGATTTG CCTGA TGTGAA AAATATACAAGAAGTGGAAAAAACGCTC AAACAAGCACTTCCCAACTGCAAATTCGATATGAAGCCATAGAAAAAACGTCGAGATTGTACGTAGAATTGGTACCATCTAGCGCAATCGCCGCATACAGGGTCTAACTTAAT ]
[+] EMBL BX608756 [ CTTTGGCACGGGAAAGAAAACTTAACGAAAATGCTTACCGTAAGACCGTTAACGAAGTTACTAGCGCAGATGCAACCGCTGGCTCTGCAAAAAACCCCAATAAACAGACCATTTTGGGGCTGGGTGAACATGATGTTCAACCGGGTCGATCGCGCTAGACTGAAGAAGGTTGGCCCCGACCGACTTTGTGCCGAATGGTTGCTAAAGAAT GAGCGAAAGCAAAGTTTGTGAAGGACGCCCGTGTGCATGTGCATTTTAACGCACTTCCGGACGAGTCCTTGCCGGTGCTAATGGAAGAACTCGATGGGACGGATTCGGGCATAATGCACATTGGGTTCGATCATCTGGAAGGATTGAATCGGCTCAGGAAAGTTGTCCTCCATAACTGTGTCTACATCGACAATCAAGCTCTGTGGAA GCTGCGATACGTTGCCAA TAC GCTGGAGGAG TTGCAAATTT CCA AGTGTGGCA ATGTCACCGA TG CCGGATTG CTACAGCT CAAA C AGCTCCCTCAGCT ACAA CAGGTGAAA ACGTTCGAATTG CCTGA TGTGAA AAATATACAGGAAGTGGAAAAAACGCTC AAACAAGCACTTCCCAACTGCAAATTCGATATGAAGCCATAGAAAAAACGTCGAGATTGTACGTAGAATTGGTACCATCTAGCGCAATCGCCGCATACAGCGT TAACTTAATAAAAATAGCACAGAGATGTGGT ]
[+] EMBL BX624758 [ ACCGCTGGCTCTGCAAAAAACCCCAATAAACAGACCATTTTGGGGCTGGGTGAACATGATGTTCAACCGGGTCGATCGCGCTAGACTGAAGAAGGTTGGCCCCGACCGACTTTGTGCCGAATGGTTGCTAAAGAATGGAGCGAAAGCAAAGTTTGTGAAGGACGCCCGTGTGCATGTGCATTTTAACGCACTTCCGGACGAGTCCTTGCCGGTGCTAATGGAAGAACTCGATGGGACGGATTCGGGCATAATGCACATTGGGTTCGATCATCTGGAAGGATTGAATCGGCTCAGGAAAGTTGTCCTCCATAACTGTGTCTACATCGACAATCAAGCTCTGTGGAA GCTGCGATACGTTGCCAA TAC GCTGGAGGAG TTGCAAATTT CCA AGTGTGGCA ATGTCACCGA TG CCGGATTG CTACAGCT CAAA C AGCTCCCTCAGCT ACAA CAGGTGAAA ACGTTCGAATTG CCTGA TGTGAA AAATATACAGGAAGTGGAAAAAACGCTC AAACAAGCACTTCCCAACTGCAAATTCGATATGAAGCCATAGAAAAAACGTCGAGATTGTACGTAGAATTGGTACCATCTAGCGCAATCGCCGCATACAGCGTCTAACTTAATAAAAATAGCACAGAGATGTGGT ]
[+] EMBL AGA283136 [ CAGACCATTTTGGGGCTGGGTGAACATGATGTTCAACCGGGTCGATCGCGCTAGACTGAAGAAGGTTGGCCCCGACCGACTTTGTGCCGAATGGTTGCTAAAGAATGGAGCGAAAGCAAAGTTTGTGAAGGACGCCCGTGTGCATGTGCATTTTAACGCACTTCCGGACGAGTCCTTGC ]
[-] EMBL AGA281547 [ AGAACTCGATGGGACGGATTCGGGCATAATGCACATTGGGTTCGATCATCTGGAAGGATTGAATCGGCTCAGGAAAGTTGTCCTCCATAACTGTGTCTACATCGACAATCAAGCTCTGTGGAA GCTGCGATACGTTGCCAA TAC GCTGGAGGAG TTGCAAATTT CCA AGTGTGGCA ATGTCACCGA TG CCGGATTA ATACAGCT CAAA C AGCTCCCTCAGCT ACAA CAGGTGAAA ACGTTCGAATTG CCTGA TGTGAA AAATATACNGGAAGTGG NNNNNNNNTCAAAACAAGCACTTCCCAACTGCAAATTCGATATGAAGCCATAGAAAAAACGTCGAGATTGTACGTAGAATTGGTACCATCTAGCGCAATCGCCGCATACAGCGTCTAACTTAATAAAAATAGCACAGAGATGTGGTGACCCAGTGCAAAAAAAAAAAAAAA]
[-] EMBL AGA281545 [ GTTCGATCATCTGGAAGGATTG ATCGGCTCAGGAAAGTTGTCCTCCATAACTGTGTCTACATCGACAATCAAGCTCTGTGGAA GCTGCGATACGTTGCCAA TAC GCTGGAGGAG TTGCAAATTT CCA AGTGTGGC CTGTCCCCGG TG CCGGATTG CTACAGCT CAAA C AGCTCCCTCAGCT ACAA CAGGTGAAA ACGTTCGAATTG CCTGA TGTGAA AAATATACAGGAAGTGGAAAAAACGCTC AAACAAGCACTTCCCAACTGCAAATTCGATATGAAGCCATAGAAAAAACGTCGAGATTGTACGTAGAATTGGTACCATCTAGCGCAATCGCCGCATACAGCGTCTAACTTAATAAAAATAGCACAGAGATGTGGTGACCCAGTGCAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8415#0 ACACCATCCNGAGGCAAGAATCCCCCGAGTGTTCTGGTTCAACTACACCTGGAAGATGTA 60
consensus_8415#1 --GGCAGATCGGCACGTGNACACAATTGGC-TGCCGGTTCAACTACACC-GGAAGATGTA 56
** * * * * * * * * ************** **********
consensus_8415#0 ATCTTTAGCACTGGGAAAGAAAACTTAACTGAAAATGCTTGCCTGTAAGACCTGTCAATG 120
consensus_8415#1 ATCTTTGGCAC-GGGAAAGAAAACTTAAC-GAAAATGCTTACC-GTAAGACC-GTTAACG 112
****** **** ***************** ********** ** ******** ** ** *
consensus_8415#0 AAGATACTAGCTGCAGATGCTAACCTGCTGGCTCTGCATAAATACCCCAATAAACAGACC 180
consensus_8415#1 AAGTTACTAGC-GCAGATGC--AACCGCTGGCTCTGCA-AAAAACCCCAATAAACAGACC 168
*** ******* ******** * * ************ *** *****************
consensus_8415#0 ATTTTGGGGCTGGGTGAACATGATGTTCAACCGGGTCGATCGCGCTAGACTGAAGAAGGT 240
consensus_8415#1 ATTTTGGGGCTGGGTGAACATGATGTTCAACCGGGTCGATCGCGCTAGACTGAAGAAGGT 228
************************************************************
consensus_8415#0 TGGTCCCGACCGACTATATGTGCCGAATGGTTTGCTAAAGAATGGACGCGAAATGCAAAG 300
consensus_8415#1 TGGCCCCGACCGACTT--TGTGCCGAATGGTT-GCTAAAGAATGGA-GCGAAA-GCAAAG 283
*** *********** ************** ************* ****** ******
consensus_8415#0 TTCTGTCGAAGGACTGCCCTGTGTGCATTGTGCATTTTTAACGCACTTCCTGGACTGAGT 360
consensus_8415#1 TT-TGT-GAAGGAC--GCCCGTGTGCAT-GTGCATTTT-AACGCACTTCC-GGAC-GAGT 335
** *** ******* ** ******** ********* *********** **** ****
consensus_8415#0 CCTTGCCTGGTGCTAATGGAAGAACTCGATGGGACCGTGATTCGGGCATTAATGCCACAT 420
consensus_8415#1 CCTTGCC-GGTGCTAATGGAAGAACTCGATGGGACG--GATTCGGGCAT-AATGC-ACAT 390
******* *************************** *********** ***** ****
consensus_8415#0 TTGGGTATCGATCATCTGGGAGCGGATTGAGTCGGCTCAGGANAGTNTGTCCTCCATAAC 480
consensus_8415#1 T-GGGT-TCGATCATCTGGAA--GGATTGAATCGGCTCAGGAAAGTT-GTCCTCCATAAC 445
* **** ************ * ******* *********** *** ************
consensus_8415#0 TGTGTCTACATCGACAATCAAGCTCTGTGCGAAGCTGCGATACGTATGCCAATACGCTGG 540
consensus_8415#1 TGTGTCTACATCGACAATCAAGCTCTGTG-GAAGCTGCGATACGT-TGCCAATACGCTGG 503
***************************** *************** **************
consensus_8415#0 NGGAGTTGCCAAATTTCCAAGTGTGGCAATGTCACCGATGCCGGATTGCTACAGCTCAAA 600
consensus_8415#1 AGGAGTTGC-AAATTTCCAAGTGTGGCAATGTCACCGATGCCGGATTGCTACAGCTCAAA 562
******** **************************************************
consensus_8415#0 CAGCTCCCTCAGCTACAACAGGTGACAAACGTTCGATTTGCCTGATGTGAAAAATATACA 660
consensus_8415#1 CAGCTCCCTCAGCTACAACAGGTGA-AAACGTTCGAATTGCCTGATGTGAAAAATATACA 621
************************* ********** ***********************
consensus_8415#0 GGCAAGTGGAAAAAACGCTCAAACCAAGCACTTCCCAACTGCCAATTCGATATGNAGCCA 720
consensus_8415#1 GG-AAGTGGAAAAAACGCTCAAAC-AAGCACTTCCCAACTGCAAATTCGATATGAAGCCA 679
** ********************* ***************** *********** *****
consensus_8415#0 TAGCCACAAAACGTCGAGCATCTGTCACGTATACTTGGTACCATCCTAGCGCAATCGCCG 780
consensus_8415#1 TAG--AAAAAACGTCGAGATTGT---ACGTAGAATTGGTACCATC-TAGCGCAATCGCCG 733
*** * *********** * * ***** * *********** **************
consensus_8415#0 CCATACAG-GTCAAACTTTAATNAACNCNATNACGCACAAGAGCATGTAGTCGAACCCCA 839
consensus_8415#1 C-ATACAGCGTCTAACTT-AATAAA---AATAGCACAGAG----ATGTGGT--GACCC-- 780
* ****** *** ***** *** ** ** * ** * **** ** ****
consensus_8415#0 AGTGCACAACACACAACAACAANCANNACAACANCACACAGGGCNATGTTGACGAACCCG 899
consensus_8415#1 AGTGCAAAAAAAAAAAAAAA---------------------------------------- 800
****** ** * * ** **
consensus_8415#0 CAAAGCNNCATACCCCATATA 920
consensus_8415#1 ---------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||