cluster # 8440

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 8440 cluster # 8440 Sequences # 10 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8440#0 length = 1850 sequences # 7
consensus_8440#1 length = 768 sequences # 1

consensus_8440#2 length = 711 sequences # 1
consensus_8440#3 length = 430 sequences # 1

consensusID : consensus_8440#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 1850
fasta sequence

                              [TTGAATCGGCACGAGGAGTAAGCAAACATATGGGCGGATTTAAGAAAGCACTTATGTAATCTTTTTCATCCTTTTAAAAATATTTTGTGTGCATCTATGAACGTCTAATCCTCTCAACTATATGCTGGATATTTTTTTAATCATCTAAGGCAGGTCAATCTAACCCCATCACAGGTAAACCTAGAATACATTGAAATGTA-TTTTTGAGGTTTTGCTACAAAATACAATAGAACTTTATATAAATTTGCTGGAAATTGTGTAAGGAATTAATTTGAAGGAAAAAAATATAATCGAATTCATGTAGCAAAATTATGGTACTCCCGTATCTATTAAATTGAGACAAGTGTTAGGGAAAGTATTTGAATGGAAACCTATGCATACACAAACAAAACGAATACAATTATCATTATGAAAGCAAACAAGAAAACGAAAAATATTAGTGCTTCCAAAAAAAACGAAAACCAAGTTCAATTCGTTTCATCCTCTCTTTTTCTTTTTCTCTCCCTCTCTCTCTCTCTTTTTATCTCATGTAATCCTTCTTTTCTTCCTCCTCTTCTTCTCTCCCGTTTTCATCTAAAAAGAAGCAATGCTTTCAATGCCAGCAATTTTAATTTACTTATAATTTAAATACTACCAATATTTACATCCCATTTTCTTCTATATTACAATAATATATAAATATATGATTATCGCTAATTGATAAGTTTTACGAACAATGTGCGGACACAATCAGTCACACTCTCTTTCTATCTTTCGTCACATATTTGTACAATTTTGCACAATTTGTTCAATATGTTCCGGGTATCATTTATCAGATGCATTTGTCATAAACTCTCTGCCGTTACCCCGCTCTATGGGATATCTAACGCGTCAGAAGTCGTAAAATGGT-GGCATGACGATGTCATGGAA-TTTTGACGAAAAGTTCTTTAACGAG-TTTTTTAACGAATTTAATTGTTGGGCTTAACCGAAGAAAAGCTTTGACAAATTTCAAGGTTCTATTCAAAACATGTCATAATGAACAGGAAGAACTAGAATAGAAGAAAGTTGTGGACGACGTGTTCTATACGAAGTTGATTCACTCTTTATTAACATATTTCATGTTAAATCATATTTCAAAAGAATAACAAATCATATTTCAAAAGAAAAAAACAATTCTTTTATTTGAAAAATAACTCAGTACAATTCATTTTCTCCGTCGCCTTCCAATTCAGGGGTTTCTATAGGAAATGATTAAAAAAAAGGATAAAGATTGTGAAAAGGACGACGGATCGCAATTCTAAGGGTACAACACTTAAACGTATCCTCACCAATGCGGTGAGTTATCCCTTCCATTGTTTTTTTTTCTTTTTTATTATAATTCACCTCTCCTCACTCGTTTGACTCATGAACAAAAACTTAGTAACAATATTGGCTGGTAATTTATTTCTTAATGAGGAGCAAAAATATCTATAACAGTTCGTTCCATCGATTTATTTAAAGAAAGATTATTCACATGAAAATGGATTGAAGAAAAGAAATAAGGGCAAGATTTGCTGCAATAGAAAAACTCGAGCGGGATGAGCGAATATGGAAAGATATCCGGTTAACAGAATAGAAAAGGACAAATCCATACATTTAATAAAACGGAAGTCGAGTAGAGCTATTTCATAAAAGGAAATGATGAAGCAACCCAGAGAAAAATGTATTTGTTGCAAACTTATGGAACGCAAGGATAGAAGAAGTAAACAGACCTAAACGCACCTTCCCATACACACATCCATAGAGGAGAAATGGTACGAAGTTATTATAGCAAGTAACTTTTTAGCGGTATAATCAATGTTTTATCATTCATCTGATCATGATCCCAAGAT]

[+] EMBL AL931627             [TTGAATCGGCACGAGGAGTAAGCAAACATATGGGCGGATTTAAGAAAGCACTTATGTAATCTTTTTCATCCTTTTAAAAATATTTTGTGTGCATCTATGAACGTCTAATCCTCTCAACTATATGCTGGATATTTTTTTAATCATCTAAGGCAGGTCAATCTAACCCCATCACAGGTAAACCTAGAATACATTGAAATGTA TTTTTGAGGTTTTGCTACAAAATACAATAGAACTTTATATAAATTTGCTGGAAATTGTGTAAGGAATTAATTTGAAGGAAAAAAATATAATCGAATTCATGTAGCAAAATTATGGTACTCCCGTATCTATTAAATTGAGACAAGTGTTAGGGAAAGTATTTGAATGGAAACCTATGCATACACAAACAAAACGAATACAATTATCATTATGAAAGCAAACAAGAAAACGAAAAATATTAGTGCTTCCAAAAAAAACGAAAACCAAGTTCAATTCGTTTCATCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL BX628811             [                                                                                                                                                               CTAACCCCATCACAGGTAAACCTAGAATACATTGAAATGTATTTTTTGAGGTTTTGCTACAAAATACAATAGAACTTTATATAAATTTGCTGGAAATTGTGTAAGGAATTAATTTGAAGGAAAAAAATATAATCGAATTCATGTAGCAAAATTATGGTACTCCCGTATCTATTAAATTGAGACAAGTGTTAGGGAAAGTATTTGAATGGAAACCTATGCATACACAAACAAAACGAATACAATTATCATTATGAAAGCAAACAAGAAAACGAAAAATATTAGTGCTTCCAAAAAAAACGAAAACCAAGTTCAATTCGTTTCATCCTCTCTTTTTCTTTTTCTCTCCCTCTCTCTCTCTCTTTTTATCTCATGTAATCCTTCTTTTCTTCCTCCTCTTCTTCTCTCCCGTTTTCATCTAAAAAGAAGCAATGCTTTCAATGCCAGCAATTTTAATTTACTTATAATTTAAATACTACCAATATTTACATCCCATTTTCTTCTATATTACAATAATATATAAATATATGATTATCGCTAATTGATAAGTTTTACGAACAATGTGCGGACACAATCAGTCACACTCTCTTTCTATCTTTCGTCACATATTTGTACAATTTTGCACAATTTGTTCAATATGTTCCGGGTATCATTTATCAGATGCATTTGTCATAAACTCTCTGCCGNTACCCCGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL BM604589             [                                                                                                                                                                                                                                                                                                                                         ccgAAATTGAGACAAGTGTTAGGGAAAGTATTTGAATGGAAACCTATGCATACACAAACAAAACGAATACAATTATCATTATGAAAGCAAACAAGAAAACGAAAAATATTAGTGCTTCC AAAAAAACGAAAACCAAGTTCAATTCGTTTCATCCTCTCCTTTTCTTTTTCTCTCCCTCTCTCTCTCTCTTTTTATCTCATGTAATCCTTCTTTTCTTCCTCCTCTTCTTCTCTCCCGTTTTCATCTAAAAAGAAGCAATGCTTTCAATGCCAGCAATTTTAATTTACTTATAATTTAAATACTACCAATATTTACATCCCATTTTCTTCTATATTACAATAATATATAAATATATGATTATCGCTAATTGATAAGTTTTACGAACAATGTGCGGACACAATCAGTCACACTCTCTTTCTATCTTTCGTCACATATTTGTACAATTTTGCACAATTTGTTCAATATGTTCCGGGTATCATTTATCAGATGCATTTGTCATAAACTCTCTGCCGTTACCCCGCTCTATGGGATATCTAACGCGTCAGAAGTCGTAAAATGGTGGGCATGACGATGTCATGGAATTTTTGACGAAAAGTTCTTTAACGAG TTTTTTAACGAATTTAAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL BX617879             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     CAATATGTTCCGGGTATCATTTATCAGATGCATTTGTCAT ATCTCTCTGCCGTTACCCCGCTCTATGGGATATCTAACGCGTCAGAAGTCGTAAAATGGT GGCATGACGATGTCATGGAA TTTTGACGAAAAGTTCTTTAACGAGTTTTTTTAACGAATTTAATTGTTGGGCTTAACCGAAGAAAAGCTTTGACAAATTTCAAGGTTCTATTCAAAACATGTCATAATGAACAGGAAGAACTAGAATAGAAGAAAGTTGTGGACGACGTGTTCTATACGAAGTTGATTCACTCTTTATTAACATATTTCATGTTAAATCATATTTCAAAAGAATAACAAATCATATT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL BM582205             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ccGATGCATTTGTCATAAACTCTCTGCCGTTACCCCGCTCTATGGGATATCTAACGCGTCAGAAGTCGTAAAATGGT GGCATGACGATGTCATGGAA TTTTGACGAAAAGTTCTTTAACGAG TTTTTTAACGAATTTAATTGTTGGGCTTAACCGAAGAAAAGCTTTGACAAATTTCAAGGTTCTATTCAAAACATGTCATAATGAACAGGAAGAACTAGAATAGAAGAAAGTTGTGGACGACGTGTTCTATACGAAGTTGATTCACTCTTTATTAACATATTTCATGTTAAATCATATTTCAAAAGAATAACAAATCATATTTCAAAAGAAAAAAACAATTCTTTTATTTGAAAAATAACTCAGTACAATTCATTTTCTCCGTCGCCTTCCAATTCAGGGGTTTCTATAGGAAATGATTAAAAAAAAGGATAAAGATTGTGAAAAGGACGACGGATCGCAATTCTAAGGGTACAACACTTAAACGTATCCTCACCAATGCGGTGAGTTATCCCTTCCATTGGTTTTTTTTCTTTTTTATTATAATTCACCTCTCCTCACTCGTTTGACTCATGAACAAAAACTTAGTAACAATATTGGCTGG                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL BM602360             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ccgGCGGTGAGTTATCCCTTCCATTGTTTTTTTTTCTTTTTTATTATAATTCACCTCTCCTCACTCGTTTGACTCATGAACAAAAACTTAGTAACAATATTGGCTGGTAATTTATTTCTTAATGAGGAGCAAAAATATCTATAACAGTTCGTTCCATCGATTTATTTAAAGAAAGATTATTCACATGAAAATGGATTGAAGAAAAGAAATAAGGGCAAGATTTGCTGCAATAGAAAAACTCGAGCGGGATGAGCGAATATGGAAAGATATCCGGTTAACAGAATAGAAAAGGACAAATCCATACATTTAATAAAACGGAAGTCGAGTAGAGCTATTTCATAAAAGGAAATGATGAAGCAACCCAGAGAAAAATGTATTTGTTGCAAACTTATGGAACGCAAGGATAGAAGAAGTAAACAGACCTAAACGCACCTTCCCATACACACATCCATAGAGGAGAAATGGTACGAAGTTATTATAGCAAGTAACTTTTTAGCGGTATAATCAATGTTTTATCATTCATCTGATCATGATCCCAAGAT]
[+] EMBL BM601897             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ccgGAGTTATCCCTTCCATTGTTTTTTTTTCTTTTTTATTATAATTCACCTCTCCTCACTCGTTTGACTCATGAACAAAAACTTAGTAACAATATTGGCTGGTAATTTATTTCTTAATGAGGAGCAAAAATATCTATAACAGTTCGTTCCATCGATTTATTTAAAGAAAGATTATTCACATGAAAATGGATTGAAGAAAAGAAATAAGGGCAAGATTTGCTGCAATAGAAAAACTCGAGCGGGATGAGCGAATATGGAAAGATATCCGGTTAACAGAATAGAAAAGGACAAATCCATACATTTAATAAAACGGAAGTCGAGTAGAGCTATTTCATAAAAGGAAATGATGAAGCAACCCAGAGAAAAATGTATTTGTTGCAAACTTATGGAACGCAAGGATAGAAGAAGTAAACAGACCTAAACGCACCTTCCCATACACACATCCATAGAGGAGAAATGGTACGAAGTTATTATAGCAAGTAACTTTTTAGCGGTATAATCAATGTTTTATCATTCA                    ]




>consensus_8440#0
TTGAATCGGCACGAGGAGTAAGCAAACATATGGGCGGATTTAAGAAAGCACTTATGTAAT
CTTTTTCATCCTTTTAAAAATATTTTGTGTGCATCTATGAACGTCTAATCCTCTCAACTA
TATGCTGGATATTTTTTTAATCATCTAAGGCAGGTCAATCTAACCCCATCACAGGTAAAC
CTAGAATACATTGAAATGTATTTTTGAGGTTTTGCTACAAAATACAATAGAACTTTATAT
AAATTTGCTGGAAATTGTGTAAGGAATTAATTTGAAGGAAAAAAATATAATCGAATTCAT
GTAGCAAAATTATGGTACTCCCGTATCTATTAAATTGAGACAAGTGTTAGGGAAAGTATT
TGAATGGAAACCTATGCATACACAAACAAAACGAATACAATTATCATTATGAAAGCAAAC
AAGAAAACGAAAAATATTAGTGCTTCCAAAAAAAACGAAAACCAAGTTCAATTCGTTTCA
TCCTCTCTTTTTCTTTTTCTCTCCCTCTCTCTCTCTCTTTTTATCTCATGTAATCCTTCT
TTTCTTCCTCCTCTTCTTCTCTCCCGTTTTCATCTAAAAAGAAGCAATGCTTTCAATGCC
AGCAATTTTAATTTACTTATAATTTAAATACTACCAATATTTACATCCCATTTTCTTCTA
TATTACAATAATATATAAATATATGATTATCGCTAATTGATAAGTTTTACGAACAATGTG
CGGACACAATCAGTCACACTCTCTTTCTATCTTTCGTCACATATTTGTACAATTTTGCAC
AATTTGTTCAATATGTTCCGGGTATCATTTATCAGATGCATTTGTCATAAACTCTCTGCC
GTTACCCCGCTCTATGGGATATCTAACGCGTCAGAAGTCGTAAAATGGTGGCATGACGAT
GTCATGGAATTTTGACGAAAAGTTCTTTAACGAGTTTTTTAACGAATTTAATTGTTGGGC
TTAACCGAAGAAAAGCTTTGACAAATTTCAAGGTTCTATTCAAAACATGTCATAATGAAC
AGGAAGAACTAGAATAGAAGAAAGTTGTGGACGACGTGTTCTATACGAAGTTGATTCACT
CTTTATTAACATATTTCATGTTAAATCATATTTCAAAAGAATAACAAATCATATTTCAAA
AGAAAAAAACAATTCTTTTATTTGAAAAATAACTCAGTACAATTCATTTTCTCCGTCGCC
TTCCAATTCAGGGGTTTCTATAGGAAATGATTAAAAAAAAGGATAAAGATTGTGAAAAGG
ACGACGGATCGCAATTCTAAGGGTACAACACTTAAACGTATCCTCACCAATGCGGTGAGT
TATCCCTTCCATTGTTTTTTTTTCTTTTTTATTATAATTCACCTCTCCTCACTCGTTTGA
CTCATGAACAAAAACTTAGTAACAATATTGGCTGGTAATTTATTTCTTAATGAGGAGCAA
AAATATCTATAACAGTTCGTTCCATCGATTTATTTAAAGAAAGATTATTCACATGAAAAT
GGATTGAAGAAAAGAAATAAGGGCAAGATTTGCTGCAATAGAAAAACTCGAGCGGGATGA
GCGAATATGGAAAGATATCCGGTTAACAGAATAGAAAAGGACAAATCCATACATTTAATA
AAACGGAAGTCGAGTAGAGCTATTTCATAAAAGGAAATGATGAAGCAACCCAGAGAAAAA
TGTATTTGTTGCAAACTTATGGAACGCAAGGATAGAAGAAGTAAACAGACCTAAACGCAC
CTTCCCATACACACATCCATAGAGGAGAAATGGTACGAAGTTATTATAGCAAGTAACTTT
TTAGCGGTATAATCAATGTTTTATCATTCATCTGATCATGATCCCAAGAT

consensusID : consensus_8440#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 768
fasta sequence

                              [GGCCAAGAATCCGGCACGATGGACTTTTTATCTCATGTAATCCTCTCTTTTCTTCCTCCTCTTCTTCTCTCCCGTTTTCATCTAAAAAGAAGCAATGCTTTCAATGCCAGCAATTTTAATTTACTTATAATTTAAATACTACCAATATTTACATCCCATTTTCTTCTATATTACAATAATATATAAATATATGATTATCGCTAATTGATAAGTTTTACGAACAATGTGCGGACACAATCAGTCACACTCTCTTTCTATCTTTCGTCACATATTTGTACAATTTTGCACAATTTGTTCAATATGTTCCGGGTATCATTTATCAGATGCATTTGTCATAAACTCTCTGCCGTTACCCCGCTCTATGGGATATCTAACGCGTCAGAAGTCGTAAAATGGTGGCATGACGAGTGTCATGGAATTTTGACGAAAAGTTCTTTAACGAGTTTTGTCTNAAGCGAATTTAATTGTTGGGCTTAACCGAAGAAAAGGCTTTGACAAAGTTTCAAGGTTCTATTCAAGAACAGTGTCATACATGAACAGGAAGAACTAGAAATAGAAGAAAGTTGTGGACGACGTGTTCTATACGAAGTTGATTCACCTCTTTATTAACATATTTCATGTTAAANTCNCNTATTTTCAACAAGAAATAACCAATCATATGTGCAAAAAGGAACAAAAACANAATACTTTAGTATTTNGGCACAAAATTAGACTGCAAGNTACAAATCCAATTTTACTCCCGACAGAGCGTTCCAAATNTCAGGGGAC]

[+] EMBL BX467943             [GGCCAAGAATCCGGCACGATGGACTTTTTATCTCATGTAATCCTCTCTTTTCTTCCTCCTCTTCTTCTCTCCCGTTTTCATCTAAAAAGAAGCAATGCTTTCAATGCCAGCAATTTTAATTTACTTATAATTTAAATACTACCAATATTTACATCCCATTTTCTTCTATATTACAATAATATATAAATATATGATTATCGCTAATTGATAAGTTTTACGAACAATGTGCGGACACAATCAGTCACACTCTCTTTCTATCTTTCGTCACATATTTGTACAATTTTGCACAATTTGTTCAATATGTTCCGGGTATCATTTATCAGATGCATTTGTCATAAACTCTCTGCCGTTACCCCGCTCTATGGGATATCTAACGCGTCAGAAGTCGTAAAATGGTGGCATGACGAGTGTCATGGAATTTTGACGAAAAGTTCTTTAACGAGTTTTGTCTNAAGCGAATTTAATTGTTGGGCTTAACCGAAGAAAAGGCTTTGACAAAGTTTCAAGGTTCTATTCAAGAACAGTGTCATACATGAACAGGAAGAACTAGAAATAGAAGAAAGTTGTGGACGACGTGTTCTATACGAAGTTGATTCACCTCTTTATTAACATATTTCATGTTAAANTCNCNTATTTTCAACAAGAAATAACCAATCATATGTGCAAAAAGGAACAAAAACANAATACTTTAGTATTTNGGCACAAAATTAGACTGCAAGNTACAAATCCAATTTTACTCCCGACAGAGCGTTCCAAATNTCAGGGGAC]




>consensus_8440#1
GGCCAAGAATCCGGCACGATGGACTTTTTATCTCATGTAATCCTCTCTTTTCTTCCTCCT
CTTCTTCTCTCCCGTTTTCATCTAAAAAGAAGCAATGCTTTCAATGCCAGCAATTTTAAT
TTACTTATAATTTAAATACTACCAATATTTACATCCCATTTTCTTCTATATTACAATAAT
ATATAAATATATGATTATCGCTAATTGATAAGTTTTACGAACAATGTGCGGACACAATCA
GTCACACTCTCTTTCTATCTTTCGTCACATATTTGTACAATTTTGCACAATTTGTTCAAT
ATGTTCCGGGTATCATTTATCAGATGCATTTGTCATAAACTCTCTGCCGTTACCCCGCTC
TATGGGATATCTAACGCGTCAGAAGTCGTAAAATGGTGGCATGACGAGTGTCATGGAATT
TTGACGAAAAGTTCTTTAACGAGTTTTGTCTNAAGCGAATTTAATTGTTGGGCTTAACCG
AAGAAAAGGCTTTGACAAAGTTTCAAGGTTCTATTCAAGAACAGTGTCATACATGAACAG
GAAGAACTAGAAATAGAAGAAAGTTGTGGACGACGTGTTCTATACGAAGTTGATTCACCT
CTTTATTAACATATTTCATGTTAAANTCNCNTATTTTCAACAAGAAATAACCAATCATAT
GTGCAAAAAGGAACAAAAACANAATACTTTAGTATTTNGGCACAAAATTAGACTGCAAGN
TACAAATCCAATTTTACTCCCGACAGAGCGTTCCAAATNTCAGGGGAC

consensusID : consensus_8440#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 711
fasta sequence

                              [CCGCGGACGCGTGGGCGGACGCGTGGGTTGATAGCTAGTAAAGCAAACATATGGGCGGATTTAAGAAAGCACTTATTGTAATCTTTTTCATCCTTTTAAAAATATTTTGTGTGCATCTATGAACGTCTAATCCTCTCAACTATATGCTGGATATTTTTTTAATCATCTAAGGCAGGTCAATCTAACCCCATCACAGGTAAACCTAGAATACATTGAAATGTATTTTTTGAGGTTTTGCTACAAAATACAATAGAACTTTATATAAATTTGCTGGAAATTGTGTAAGGAATTAATTTGAAGGAAAAAAATATAATCGAATTCATGTAGCAAAATTATGGTACTCCCGTATCTATTAAATTGAGACAAGTGTTAGGGAAAGTATTTGAATGGAAACCTATGCATACACAAACAAAACGAATACAATTATCATTATGAAAGCAAACAAGAAAACGAAAAATATTAGTGCTTCCAAAAAAACGAAAACCAAGTTCAATTCGTTTCATCCTCTCCTTTTCTTTTTCTCTCCCTCTCTCTCTCTCTTTTTATCTCATGTAATCCTTCTTTTCTTCCTCCTCTTCTTCTCTCCCGTTTTCATCTAAAAAGAAGCAATGCTTTCAATGCCAGCAATTTTAATTTACTTATAATTTAAATACTACCAATATTTACATCCCATTTTCTTCTATATTACAATAATATATAAATATATGATTA]

[+] EMBL BM614975             [CCGCGGACGCGTGGGCGGACGCGTGGGTTGATAGCTAGTAAAGCAAACATATGGGCGGATTTAAGAAAGCACTTATTGTAATCTTTTTCATCCTTTTAAAAATATTTTGTGTGCATCTATGAACGTCTAATCCTCTCAACTATATGCTGGATATTTTTTTAATCATCTAAGGCAGGTCAATCTAACCCCATCACAGGTAAACCTAGAATACATTGAAATGTATTTTTTGAGGTTTTGCTACAAAATACAATAGAACTTTATATAAATTTGCTGGAAATTGTGTAAGGAATTAATTTGAAGGAAAAAAATATAATCGAATTCATGTAGCAAAATTATGGTACTCCCGTATCTATTAAATTGAGACAAGTGTTAGGGAAAGTATTTGAATGGAAACCTATGCATACACAAACAAAACGAATACAATTATCATTATGAAAGCAAACAAGAAAACGAAAAATATTAGTGCTTCCAAAAAAACGAAAACCAAGTTCAATTCGTTTCATCCTCTCCTTTTCTTTTTCTCTCCCTCTCTCTCTCTCTTTTTATCTCATGTAATCCTTCTTTTCTTCCTCCTCTTCTTCTCTCCCGTTTTCATCTAAAAAGAAGCAATGCTTTCAATGCCAGCAATTTTAATTTACTTATAATTTAAATACTACCAATATTTACATCCCATTTTCTTCTATATTACAATAATATATAAATATATGATTA]




>consensus_8440#2
CCGCGGACGCGTGGGCGGACGCGTGGGTTGATAGCTAGTAAAGCAAACATATGGGCGGAT
TTAAGAAAGCACTTATTGTAATCTTTTTCATCCTTTTAAAAATATTTTGTGTGCATCTAT
GAACGTCTAATCCTCTCAACTATATGCTGGATATTTTTTTAATCATCTAAGGCAGGTCAA
TCTAACCCCATCACAGGTAAACCTAGAATACATTGAAATGTATTTTTTGAGGTTTTGCTA
CAAAATACAATAGAACTTTATATAAATTTGCTGGAAATTGTGTAAGGAATTAATTTGAAG
GAAAAAAATATAATCGAATTCATGTAGCAAAATTATGGTACTCCCGTATCTATTAAATTG
AGACAAGTGTTAGGGAAAGTATTTGAATGGAAACCTATGCATACACAAACAAAACGAATA
CAATTATCATTATGAAAGCAAACAAGAAAACGAAAAATATTAGTGCTTCCAAAAAAACGA
AAACCAAGTTCAATTCGTTTCATCCTCTCCTTTTCTTTTTCTCTCCCTCTCTCTCTCTCT
TTTTATCTCATGTAATCCTTCTTTTCTTCCTCCTCTTCTTCTCTCCCGTTTTCATCTAAA
AAGAAGCAATGCTTTCAATGCCAGCAATTTTAATTTACTTATAATTTAAATACTACCAAT
ATTTACATCCCATTTTCTTCTATATTACAATAATATATAAATATATGATTA

consensusID : consensus_8440#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 430
fasta sequence

                              [CAGAATCGCCACGAGGNTTAATTGTTGGGCTTACCGAAGCAAAAGCTTTGACAAATTTCAAGGTTCTATTCAAAACATGTCATAATGAACAGGAAGAACTAGAATAGAAGAAAGTTGTGGACGACGTGTTCTATACGAAGTTGATTCACTCTTTATTAACATATTTCATGTTAAATCATATTTCAAAAGAATAACAAATCATATTTCAAAAGAAAAAAACAATTCTTTTATTTGAAAAATAACTCAGTACAATTCATTTTCTCCGTCGCCTTCCAATTCAGGGGCATTTCTATTCTATTCATATTGCCTTCTATTCAGGGCATTCTATAGGAAATGATTAAAGACAACAATGATAAAAGATTGTGAAAAGGACGACGGATCGCAATTTCTAAGGGGTACAACACGTTAAAGCGTTATCCTCACCAATGCG]

[+] EMBL BX469100             [CAGAATCGCCACGAGGNTTAATTGTTGGGCTTACCGAAGCAAAAGCTTTGACAAATTTCAAGGTTCTATTCAAAACATGTCATAATGAACAGGAAGAACTAGAATAGAAGAAAGTTGTGGACGACGTGTTCTATACGAAGTTGATTCACTCTTTATTAACATATTTCATGTTAAATCATATTTCAAAAGAATAACAAATCATATTTCAAAAGAAAAAAACAATTCTTTTATTTGAAAAATAACTCAGTACAATTCATTTTCTCCGTCGCCTTCCAATTCAGGGGCATTTCTATTCTATTCATATTGCCTTCTATTCAGGGCATTCTATAGGAAATGATTAAAGACAACAATGATAAAAGATTGTGAAAAGGACGACGGATCGCAATTTCTAAGGGGTACAACACGTTAAAGCGTTATCCTCACCAATGCG]




>consensus_8440#3
CAGAATCGCCACGAGGNTTAATTGTTGGGCTTACCGAAGCAAAAGCTTTGACAAATTTCA
AGGTTCTATTCAAAACATGTCATAATGAACAGGAAGAACTAGAATAGAAGAAAGTTGTGG
ACGACGTGTTCTATACGAAGTTGATTCACTCTTTATTAACATATTTCATGTTAAATCATA
TTTCAAAAGAATAACAAATCATATTTCAAAAGAAAAAAACAATTCTTTTATTTGAAAAAT
AACTCAGTACAATTCATTTTCTCCGTCGCCTTCCAATTCAGGGGCATTTCTATTCTATTC
ATATTGCCTTCTATTCAGGGCATTCTATAGGAAATGATTAAAGACAACAATGATAAAAGA
TTGTGAAAAGGACGACGGATCGCAATTTCTAAGGGGTACAACACGTTAAAGCGTTATCCT
CACCAATGCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8440#1      ------------------------------------------------------------
consensus_8440#3      ------------------------------------------------------------
consensus_8440#0      TTGAATCGGCACGAGGAGTAAGCAAACATATGGGCGGATTTAAGAAAGCACTTATGTAAT 60
consensus_8440#2      ------------------------------------------------------------
                                                                                  

consensus_8440#1      ------------------------------------------------------------
consensus_8440#3      ------------------------------------------------------------
consensus_8440#0      CTTTTTCATCCTTTTAAAAATATTTTGTGTGCATCTATGAACGTCTAATCCTCTCAACTA 120
consensus_8440#2      ------------------------------------------------------------
                                                                                  

consensus_8440#1      ------------------------------------------------------------
consensus_8440#3      ------------------------------------------------------------
consensus_8440#0      TATGCTGGATATTTTTTTAATCATCTAAGGCAGGTCAATCTAACCCCATCACAGGTAAAC 180
consensus_8440#2      ------------------------------------------------------------
                                                                                  

consensus_8440#1      ------------------------------------------------------------
consensus_8440#3      ------------------------------------------------------------
consensus_8440#0      CTAGAATACATTGAAATGTATTTTTGAGGTTTTGCTACAAAATACAATAGAACTTTATAT 240
consensus_8440#2      ------------------------------------------------------------
                                                                                  

consensus_8440#1      ------------------------------------------------------------
consensus_8440#3      ------------------------------------------------------------
consensus_8440#0      AAATTTGCTGGAAATTGTGTAAGGAATTAATTTGAAGGAAAAAAATATAATCGAATTCAT 300
consensus_8440#2      ------------------------------------------------------------
                                                                                  

consensus_8440#1      ------------------------------------------------------------
consensus_8440#3      ------------------------------------------------------------
consensus_8440#0      GTAGCAAAATTATGGTACTCCCGTATCTATTAAATTGAGACAAGTGTTAGGGAAAGTATT 360
consensus_8440#2      ------------------------------------------------------------
                                                                                  

consensus_8440#1      ------------------------------------------------------------
consensus_8440#3      ------------------------------------------------------------
consensus_8440#0      TGAATGGAAACCTATGCATACACAAACAAAACGAATACAATTATCATTATGAAAGCAAAC 420
consensus_8440#2      ------------------------------------------------------------
                                                                                  

consensus_8440#1      ------------------------------------------------------------
consensus_8440#3      ------------------------------------------------------------
consensus_8440#0      AAGAAAACGAAAAATATTAGTGCTTCCAAAAAAAACGAAAACCAAGTTCAATTCGTTTCA 480
consensus_8440#2      ------------------------------------------------------------
                                                                                  

consensus_8440#1      -------------GGCCAAGAATCCGGCACGATGGACTTTTTATCTCATGTAATCCTCTC 47
consensus_8440#3      ------------------------------------------------------------
consensus_8440#0      TCCTCTCTTTTTCTTTTTCTCTCCCTCTCTCTCTCTCTTTTTATCTCATGTAATCCT-TC 539
consensus_8440#2      ------------------------------------------------------------
                                                                                  

consensus_8440#1      TTTTCTTCCTCCTCTTCTTCTCTCCCGTTTTCATCTAAAAAGAAGCAATGCTTTCAATGC 107
consensus_8440#3      ------------------------------------------------------------
consensus_8440#0      TTTTCTTCCTCCTCTTCTTCTCTCCCGTTTTCATCTAAAAAGAAGCAATGCTTTCAATGC 599
consensus_8440#2      ------------------------------------------------------------
                                                                                  

consensus_8440#1      CAGCAATTTTAATTTACTTATAATTTAAATACTACCAATATTTACATCCCATTTTCTTCT 167
consensus_8440#3      ------------------------------------------------------------
consensus_8440#0      CAGCAATTTTAATTTACTTATAATTTAAATACTACCAATATTTACATCCCATTTTCTTCT 659
consensus_8440#2      ------------------------------------------------------------
                                                                                  

consensus_8440#1      ATATTACAATAATATATAAATATATGATTATCGCTAATTGATAAGTTTTACGAACAATGT 227
consensus_8440#3      ------------------------------------------------------------
consensus_8440#0      ATATTACAATAATATATAAATATATGATTATCGCTAATTGATAAGTTTTACGAACAATGT 719
consensus_8440#2      ---------CCGCGGACGCGTGGGCGGACG-CGTGGGTTGATAGCTAGTAAAGCAAACAT 50
                                                                                  

consensus_8440#1      GCGGACACAATCAGTCACACTCTCTTTCTATCTTTCGTCACATATTTGTACAATTTTGCA 287
consensus_8440#3      ------------------------------------------------------------
consensus_8440#0      GCGGACACAATCAGTCACACTCTCTTTCTATCTTTCGTCACATATTTGTACAATTTTGCA 779
consensus_8440#2      ATGGGCGGATTTAAGAAAGCACTTATTGTAATCTTTTTCATCCTTTTAAAAATATTTTGT 110
                                                                                  

consensus_8440#1      CAATTTGTTCAATATGTTCCGGGTATCATTTATCAGATGCATTTGTCATAAACTCTCTGC 347
consensus_8440#3      ------------------------------------------------------------
consensus_8440#0      CAATTTGTTCAATATGTTCCGGGTATCATTTATCAGATGCATTTGTCATAAACTCTCTGC 839
consensus_8440#2      GTGCATCTATGAACGTCTAATCCTCTCAACTATATGCTGGATATTTTTTTAATCATCTAA 170
                                                                                  

consensus_8440#1      CGTTACCCCGCTCTATGGGATATCTAACGCGTCAGAAGTCGTAAAATGGTGGCATGACGA 407
consensus_8440#3      ------------------------------------------------------------
consensus_8440#0      CGTTACCCCGCTCTATGGGATATCTAACGCGTCAGAAGTCGTAAAATGGTGGCATGACGA 899
consensus_8440#2      GGCAGGTCAATCTAACCCCATCACAGGTAAACCTAGAAT-ACATTGAAATGTATTTTTTG 229
                                                                                  

consensus_8440#1      GTGTCATGGAATTTTGACGAAAAGTTCTTTAACGAGTTTTGTCTNAAGCGAATTTAATTG 467
consensus_8440#3      ---------------------------------CAGAATCGCCACGAG---GNTTAATTG 24
consensus_8440#0      -TGTCATGGAATTTTGACGAAAAGTTCTTTAACGAGTTTTTTAACGAA----TTTAATTG 954
consensus_8440#2      AGGTTTTGCTACAAAATACAATAGAACTTTATATAAATTTGCTGGAAATT-GTGTAAGGA 288
                                                        *   *       *       ***   

consensus_8440#1      TTGGGCTTAACCGAAGAAAAGGCTTTGACAAAGTTTCAAGGTTCTATTCAAGAACAGTGT 527
consensus_8440#3      TTGGGCTTA-CCGAAGCAAAAGCTTTGACAAA-TTTCAAGGTTCTATTCAA-AACA-TGT 80
consensus_8440#0      TTGGGCTTAACCGAAG-AAAAGCTTTGACAAA-TTTCAAGGTTCTATTCAA-AACA-TGT 1010
consensus_8440#2      ATTAATTTG---AAGGAAAAAAATATAATCGA-ATTCATGTAGCAAAATTATGGTACTCC 344
                       *    **     * * ***   * * *   *  **** *   * *    *    * *  

consensus_8440#1      CATACATGAACAGGAAGAACTAGAAATAGAAGAAAGTTGTGGACGACGTGTTCTATACGA 587
consensus_8440#3      CATA-ATGAACAGGAAGAACTAGAA-TAGAAGAAAGTTGTGGACGACGTGTTCTATACGA 138
consensus_8440#0      CATA-ATGAACAGGAAGAACTAGAA-TAGAAGAAAGTTGTGGACGACGTGTTCTATACGA 1068
consensus_8440#2      CGTATCTATTAAATTGAGACAAGTGTTAGGGAAAGTATTTGAATG--GAAACCTATGCAT 402
                      * **  *    *      ** **   ***   **   * ** * *  *    **** *  

consensus_8440#1      AGTTGATTCACCTCTTTATTAACATATTTCATGTTAAANTCNCNTATTTTCAACAAGAAA 647
consensus_8440#3      AGTTGATTCAC-TCTTTATTAACATATTTCATGTTAAAT---CATATTTCAAA---AGAA 191
consensus_8440#0      AGTTGATTCAC-TCTTTATTAACATATTTCATGTTAAAT---CATATTTCAAA---AGAA 1121
consensus_8440#2      ACACAAACAAA------ACGAATACAATTATCATTATGAAAGCAAACAAGAAAACGAAAA 456
                      *    *   *       *  ** * * **    ***      *  *     **     **

consensus_8440#1      TAACCAATCATATGTGCAAAAAGGAACAAAAACANAATACTTT--------AGTATTTNG 699
consensus_8440#3      TAACAAATCATATTTCAAAAGAAAAAAACAATTCTTTTATTTGAAA-----AATAACTCA 246
consensus_8440#0      TAACAAATCATATTTCAAAAGAAAAAAACAATTCTTTTATTTGAAA-----AATAACTCA 1176
consensus_8440#2      ATATTAGTGCTTCCAAAAAAACGAAAACCAAGTTCAATTCGTTTCATCCTCTCCTTTTCT 516
                        *  * *  *      ***    **   **      *   *               *  

consensus_8440#1      GCACAA---AATTAGACTGCAAGNTACAAATCCAA------TTTTACTCCCGACAGAGCG 750
consensus_8440#3      GTACAATTCATTTTCTCCGTCGCCTTCCAATTCAGGGGCATTTCTATTCTATTCATATTG 306
consensus_8440#0      GTACAATTCATTTTCTCCGTCGCCTTCCAATTCAGGGG-------TTTCTATAGGAAATG 1229
consensus_8440#2      TTTTCTCTCCCTCTCTCTCTCTCTTTTTATCTCATGTAATCCTTCTTTTCTTCCTCCTCT 576
                                 *    *       *   *   **             *            

consensus_8440#1      TTCCAAATNTCAGGG-GAC----------------------------------------- 768
consensus_8440#3      CCTTCTATT-CAGGG-CATTCTATAGGAAATGAT-----TAAAGACAACAATGATAAAAG 359
consensus_8440#0      ATTAAAAAAAAGGAT-AAAGATTGTGAAAAGGAC-----GACGGATCGCAATTCTAAGGG 1283
consensus_8440#2      TCTTCTCTCCCGTTTTCATCTAAAAAGAAGCAATGCTTTCAATGCCAGCAATTTTAATTT 636
                                       *                                          

consensus_8440#1      ------------------------------------------------------------
consensus_8440#3      ATTGTGAAAAGGACGACGGATCGCAATTTCTAAGGGGTACAACA--CGTTAAAGCGTTAT 417
consensus_8440#0      TACAACACTTAAACGTATCCTCACCAATGCGGTGAGTTATCCCTTCCATTGTTTTTTTTT 1343
consensus_8440#2      ACTTATAATTTAAATACTACCAATATTTACATCCCATTTTCTTCTATATTACAATAATAT 696
                                                                                  

consensus_8440#1      ------------------------------------------------------------
consensus_8440#3      CCTCACCAATGCG----------------------------------------------- 430
consensus_8440#0      CTTTTTTATTATAATTCACCTCTCCTCACTCGTTTGACTCATGAACAAAAACTTAGTAAC 1403
consensus_8440#2      ATAAATATATGATTA--------------------------------------------- 711
                                                                                  

consensus_8440#1      ------------------------------------------------------------
consensus_8440#3      ------------------------------------------------------------
consensus_8440#0      AATATTGGCTGGTAATTTATTTCTTAATGAGGAGCAAAAATATCTATAACAGTTCGTTCC 1463
consensus_8440#2      ------------------------------------------------------------
                                                                                  

consensus_8440#1      ------------------------------------------------------------
consensus_8440#3      ------------------------------------------------------------
consensus_8440#0      ATCGATTTATTTAAAGAAAGATTATTCACATGAAAATGGATTGAAGAAAAGAAATAAGGG 1523
consensus_8440#2      ------------------------------------------------------------
                                                                                  

consensus_8440#1      ------------------------------------------------------------
consensus_8440#3      ------------------------------------------------------------
consensus_8440#0      CAAGATTTGCTGCAATAGAAAAACTCGAGCGGGATGAGCGAATATGGAAAGATATCCGGT 1583
consensus_8440#2      ------------------------------------------------------------
                                                                                  

consensus_8440#1      ------------------------------------------------------------
consensus_8440#3      ------------------------------------------------------------
consensus_8440#0      TAACAGAATAGAAAAGGACAAATCCATACATTTAATAAAACGGAAGTCGAGTAGAGCTAT 1643
consensus_8440#2      ------------------------------------------------------------
                                                                                  

consensus_8440#1      ------------------------------------------------------------
consensus_8440#3      ------------------------------------------------------------
consensus_8440#0      TTCATAAAAGGAAATGATGAAGCAACCCAGAGAAAAATGTATTTGTTGCAAACTTATGGA 1703
consensus_8440#2      ------------------------------------------------------------
                                                                                  

consensus_8440#1      ------------------------------------------------------------
consensus_8440#3      ------------------------------------------------------------
consensus_8440#0      ACGCAAGGATAGAAGAAGTAAACAGACCTAAACGCACCTTCCCATACACACATCCATAGA 1763
consensus_8440#2      ------------------------------------------------------------
                                                                                  

consensus_8440#1      ------------------------------------------------------------
consensus_8440#3      ------------------------------------------------------------
consensus_8440#0      GGAGAAATGGTACGAAGTTATTATAGCAAGTAACTTTTTAGCGGTATAATCAATGTTTTA 1823
consensus_8440#2      ------------------------------------------------------------
                                                                                  

consensus_8440#1      ---------------------------
consensus_8440#3      ---------------------------
consensus_8440#0      TCATTCATCTGATCATGATCCCAAGAT 1850
consensus_8440#2      ---------------------------