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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8468#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1333 fasta sequence
[ATGCNCAGCAGAATCCCGAGGTTAACAGAGG-CAATTGAACGTCTCGCCTTTTCGTATC-NT-TTTTTCGGGGACCGCAACGAAACTAAACTAATTAAAACATAGGAAATTGTTGTTAGCGCGTTGTTCT-TGTATCAAACACACACAGAGTCGCATCACAGTCGCAGCATGAGGATGGTGCGATCCTT-CGT-CCGGTCACACTTTAAGCTGCTGGCGGCGGTACTGCTGGCCGGTCTGGCCGTGA-GTATGGTCG-AGGCC-GAGAAGGAAATACCACTGA-CCAAGTTCAGCCAAGATGTTGGCAATTACGGTGCAACGATGACGTTCCTGTACTGTTATTCC-TGCGG-GTATCGCAAAGCGTTCGACGACTACCACAACCTCATCCTGG-AGA-A-GTATCCGG-AAA-TTACGATACGGGGCA-GCAACTACG-ATCCGTCCGGCGTGAACA-TGCTGCTGTCGAA-GGTGCTGCTGGTGACGAAGCTGCTGCTGATCGCCGCCCTGATGTCGAACTACG-ACATCGGGCGCTACAT-CGGCAACCCGTTTGCCGGCTGGTGG-CAATGGTGCTTCAACAACAAGCTGTACGCCTCGATGATGATCTTCTTCCTCGGCAACACGCTGGAAGCGCAGCTAATATCATCCGGTGCGTTCGAGATAACGCTGAACGATGTGCCGGTGTGGTCGAAGCTGGAGACGGGCCGG-TTTCCTGCGCCACA-GGAGATGTTCC-AAATCATCGACAATCA-CCTACA-GTTTGCCAACAAGATCGAGCCAAATCCGGATTTCGTGAAATAAGCGGCTCGTTGCCAGCAAGGCCAGTCATCCTACACTACTCTCGGCAGTGGTTCACTTATTATTATTGTTTGTTAGTGTTTTCTTGTCAGTTGCCTTACACCGCGGTGTTCCACAATTGTTTCCAAGTATCGAACAAGGATTATTATTTGCTATAAAGCTGGATGAAGGGTAAATGTATAATTGGAAAAGGATTCAGTTTTAATTTTCTTCGTTTTCCCCGTCGTACATCATTGAACATTTGCAGCACAGGG-ATATGTTTGAAATTTTTGTTTTATTTATTTCCCTGTTTTGCGTAAGAATTTAAATACTCCACACGTTTCCCCTTACGAAATGCAGCAAAACGTCTAAACAAAATATATTCAACATGTTTTAATCCGCATGTGTTTTGGGCAGGCCGCTCGTGTCTAACGCTCCCCCTTTGAAGGCGCTAGTTTGTAAGGCAATCTGTACGGCGGAGGCAACGT-GGGCCGGCAAGTGCAT-AGGAGCAGGTGTGTTTTCGTATCCGTGGAAGAATTGAGGGGACTAAACTAAAACCAAATAAACCCACAAAAAA]
[+] EMBL AL692329 [ATGCNCAGCAGAATCCCGAGGTTAACAGAGG CAATTGAACGTCTCGCCTTTTCGTATCTNTATTTTTCGGGGACCGCAACGAAACTAAACTAATTAAAACATAGGAAATTGTTGTTAGCGCGTTGTTCTATGTATCAAACACACACAGAGTCGCATCACAGTCGCAGCATGAGGATGGTGCGATCCTTACGTACCGGTCACACTTTAAGCTGCTGGCGGCGGTACTGCTGGCCGGTCTGGCCGTGANGTATGGTCGCAGGCCTGAGAAGGAAATACCACTGAGCCAAGTTCAGCCAAGATGTNGGCAATTACGGTGCAACGATGACGTTCCTGTACTGTTATTCCTTACGGCGTATCGCAAAGCGTTCGACGACTACCA AACCTCATCCTGGCAGACACGTATCCGGCAAACTTACGATACGGGGCACGCAACTACGCATCCGTCCGGCGTGAACACTGCTGCTGTCGAACGGTGCTGCTGGTGACGAAGCTGCTGCTGATCGACG CCTGATGTCGAACTACGCACATCGGGCGCTACATACGGCAACCCGTTTGCCGGCTGGTGGCCAATGG ]
[+] EMBL BX619579 [ CAGAGGCCAATTGAAGTTCTCGCTTTTTCGTATC GT TTTTTCGGGGACCGCAACGAAACTAAACTAATTAAAACATAGGAAATTGTTGTTAGCGCGTTGTTCT TATATCAAACACACACAGAGCCGCATCACAGTCGCAGCATGAGGATGGTGCGATCCTT CGT CCGGTCACACTTTAAGCTGCTGGCGGCGGTACTGCTGGCCGGTCTGGCCGTGA GTATGGTCG AGGCC GAGAAGGAAATACCACTGA CCAAGTTCAGCCAAGATGTTGGCAATTACGGTGCAACGATGACGTTCCTGTACTGTTATTCC TGCGG GTATCGCAAAGCGTTCGACGACTACCACAACCTCATCCTGG AGA A GTATCCGG AAA TTACGATACGGGGCA GCAACTACG ATCCGTCCGGCGTGAACA TGCTGCTGTCGAA GGTGCTGCTGGTGACGAAGCTGCTGCTGATCGCCGCCCTGATGTCGANCTACG ACATCGGGCGCTACAT CGGCAACCCGTTTGCCGGCTGGTGG CAATGGTGCTTCAACNACAAGCTGTACGCCTCGATGATGATCTNCTNCCTCGGCAACACGCTGGAAGCGCAGCTATTATCATCCGGTGCGTTCGAGATAACGCTGAACGATGTGCNNGTGTGGTCGAAG ]
[+] EMBL BX627586 [ AGGAAATTGTTGTTAGCGCGTTGTTCT TGTATCAAACACACACAGAGTCGCATCACAGTCGCAGCATGAGGATGGTGCGATCCTT CGT CCGGTCACACTTTAAGCTGCTGGCGGCGGTACTGCTGGCCGGTCTGGCCGTGA GTATGGTCG AGGCC GAGAAGGAAATACCACTGA CCAAGTTCAGCCAAGATGTTGGCAATTACGGTGCAACGATGACGTTCCTGTACTGTTATTCC TGCGG GTATCGCAAAGCGTTCGACGACTACCACAACCTCATCCTGG AGA A GTATCCGG AAA TTACGATACGGGGCA GCAACTACG ATCCGTCCGGCGTGAACA TGCTGCTGTCGAA GGTGCTGCTGGTGACGAAGCTGCTGCTGATCGCCGCCCTGATGTCGAACTACG ACATCGGGCGCTACAT CGGCAACCCGTTTGCCGGCTGGTGG CAATGGTGCTTCAACAACAAGCTGTACGCCTCGATGATGATCTTCTTCCTCGGCAACACGCTGGAAGCGCAGCTAATATCATCCGGTGCGTTCGAGATAACGCTGAACGATGTGCCGGTGTGGTCGAAGCTGGAGACGGGCCGGTTTTCCTGCGCCACAGGGAGATGTTCCAAAATCATCGACAATCACCCTACAGGTTTGCCAACAAGATCGAGCCAAATCCGGATTTCGTGAAA ]
[+] EMBL BX613136 [ CTGGTGACGAAGCTGCTGCTGATCGCCGCCCTGATGTCGAACTACG ACATCGGGCGCTACAT CGGCAACCCGTTTGCCGGCTGGTGG CAATGGTGCTTCAACAACAAGCTGTACGCCTCGATGATGATCTTCTTCCTCGGCAACACGCTGGAAGCGCAGCTAATATCATCCGGTGCGTTCGAGATAACGCTGAACGATGTGCCGGTGTGGTCGAAGCTGGAGACGGGCCGG TTTCCTGCGCCACA GGAGATGTTCC AAATCATCGACAATCA CCTACA GTTTGCCAACAAGATCGAGCCAAATCCGGATTTCGTGAAATAAGCGGCTCGTTGCCAGCAAGGCCAGTCATCCTACACTACTCTCGGCAGTGGTTCACTTATTATTATTGTTTGTTAGTGTTTTCTTGTCAGTTGCCTTACACCGCGGTGTTCCACAATTGTTTCCAAGTATCGAACAAGGATTATTATTTGCTATAAAGCTGGATGAAGGGTAAATGTATAATTGGAAAAGGATTCAGTTTTAATTTTCTTCGTTTTCCCCGTCGTACATCATTGAACATTTGCAGCACAGGG ATATGTTTGAAATTTTTGTTTTATTTATTTCCCTGTTTTGCGTAAGAATTTAAATACTCCACACGTTTCCCCTTACGAAATGCAGCAAAACGTCTAAACAAAATATATTCAACATGTTTTAATCCGCATGTGTTTTGGGCAGGCCGCTCGTGTCTAACGCTCCCCCTTTGAAGGCGCTAGTTTGTAAGGCAATCTGTACGGCGGAGGCAA ]
[+] EMBL BM627376 [ ccgAGCTAATATCATCCGGTGCGTTCGAGATAACGCTGAACGATGTGCCGGTGTGGTCGAAGTTGGAGACGGGCCGG TTTCCTGCGCCACA GGAGATGTTCC AAATCATCGACAATCA TCTACA GTTTGCCAACAAGATCGAGCCAAATCCGGATTTCGTGAAATAAGCGACTCGTTGCCAGCAAGGGCAGTCATCCTACACTACTCTCGGCAGTGGTTCACTTATTATTATTGTTTGTTAGTGTTTTCTTGTCAGTTGCCTTACACCACGGTGTTCCACAATTGTTTCTAAGTATCGAACAACGATTATTATTTGCTATTAAGCAGGATGAAGGGTAAATGTACAATTGGAAAAGGATTCAGTTTTAATTTTCTTTGTTTTCCCCATCGTACATCATTGAACATTTGCAGCACAGGGTGTATGTTTGAAATTTTTGTTTTATTTATTTCCCTGTTTTGCGTAAGAATTTAAATACTCCACACGTTTCCCCTTACGAAATGCAGCAAAACGTCTCAACAAAATATATTCAACATGTTTTAATCCGCATGTGTTTTGGGCAGGCCGCTCGTGTCTAACGCTCCCCCTTTGAAGGCGCTAGTTTGTAAGGCAATCTGTACGGCGGAGGCAACGTGGGGCCGGCAAGTGCATAAGGAGCAGGTGTGTTTTCGTATCCGTGGAAG ]
[-] EMBL AGA280273 [ AATGTATAATTGGAAAAGGATTCAGTTTTAATTTTCTTCGTTTTCCCAGTCGAACATCATTGAACATTTGCAGCACAGGG ATATGTTTGAAATTTTTGTTTTATTTATTTCCCTGTTTTGCGTAAGAATTTAAATACTCCACACGTTTCCCCTTACGAAATGCAGCAAAACGTCTAAACAAAATATATTCAACATGTTTTAATCCGCATGTGTTTTGGGCAGGCCGCTCGTGTCTAACGCTCCCCCTTTGAAGGCGTTAGTTTGTAAGGCAATCTGTACGGCGGAGGCAACGT GGGCCGGCAAGTGCAT AGGAGCAGGTGTGTTTTCGTATCCGTGGAAGAATTGAGGGGACTAAACTAAAACCAAATAAACCCACAAAAAA]
[-] EMBL AGA284878 [ TTTT TTTTTTTCGTTTTCCCCGTCGTACATCATTGAACATTTGCAGCACAGGG ATATGTTTGAAATTTTTGTTTTATTTATTTCCCTGTTTTGCGTAAGAATTTAAATACTCCACACGTTTCCCCTTACGAAATGCAGCAAAACGTCTAAACAAAATATATTCAACATGTTTTAATCCGCATGTGTTTTGGGCAGGCCGCTCGTGTCTAACGCTCCCCCTTTGAAGGCGCTAGTTTGTAAGGCAATCTGTACGGCGGAGGCAAC ]
[+] EMBL AGA283589 [ tTTTTTTTCGTTTTCCCCGTCGTACATCATTGAACATTTGCAGCACAGGG ATATGTTTGAAATTTTTGTTTTATTTATTTCCCTGTTTTGCGTAAGAATTTAAATACTCCACACGTTTCCCCTTACGAAATGCAGCAAAACGTCTAAACAAAATATATTCAACATGTTTTAATCCGCATGTGTTTTGGGCAGGCCGCTCGTGTCTAACGCTCCCCCTTTGAAGGCGCTAGTTTGTAAGGCAATCTGTACGGCGGAGGCAACGT GGGCCGGCctc ]
[+] EMBL BM606565 [ ccgAATATATTCAACATGTTTTAATCCGCATGTGTTTTGGGCAGGCCGCTCGTGTCTAACGCTCCCCCTTTGAAGGCGCTAGTTTGTAAGGCAATCTGTACGGCGGAGGCAACGT GGGCCGGCAAGTGCAT AGGAGCAGGTGTGTTTTCGTATCCGTGGAAGAATTGAATAAAATAAACTAAAACCAAATAAACCCAC ]
consensusID : consensus_8468#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 575 fasta sequence
[CCGCCCACGCGTCCGATCGAGCCAAATCCGGATTTCGTGAAATAAGCGACTCGTTGCCAGCAAGGGCAGTCATCCTACACTACTCTCGGCAGTGGTTCACTTATTATTATTGTTTGTTAGTGTTTTCTTGTCAGTTGCCTTACACCACGGTGTTCCACAATTGTTTCTAAGTATCGAACAACGATTATTATTTGCTATTAAGCAGGATGAAGGGTAAATGTACAATTGGAAAAGGATTCAGTTTTAATTTTCTTTGTTTTCCCCATCGTACATCATTGAACATTTGCAGCACAGGGTGTATGTTTGAAATTTTTGTTTTATTTATTTCCCTGTTTTGCGTAAGAATTTAAATACTCCACACGTTTCCCCTTACGAAATGCAGCAAAACGTCTCAACAAAATATATTCAACATGTTTTAATCCGCATGTGTTTTGGGCAGGCCGCTCGTGTCTAACGCTCCCCCTTTGAAGGCGCTAGTTTGTAAGGCAATCTGTACGGCGGAGGCAACGTGGGCCGGCAAGTGCATAGGAGCAGGTGTGTTTTCGTATCCGTGGAAGAATTGAATAAAATAAACT]
[+] EMBL BM598912 [CCGCCCACGCGTCCGATCGAGCCAAATCCGGATTTCGTGAAATAAGCGACTCGTTGCCAGCAAGGGCAGTCATCCTACACTACTCTCGGCAGTGGTTCACTTATTATTATTGTTTGTTAGTGTTTTCTTGTCAGTTGCCTTACACCACGGTGTTCCACAATTGTTTCTAAGTATCGAACAACGATTATTATTTGCTATTAAGCAGGATGAAGGGTAAATGTACAATTGGAAAAGGATTCAGTTTTAATTTTCTTTGTTTTCCCCATCGTACATCATTGAACATTTGCAGCACAGGGTGTATGTTTGAAATTTTTGTTTTATTTATTTCCCTGTTTTGCGTAAGAATTTAAATACTCCACACGTTTCCCCTTACGAAATGCAGCAAAACGTCTCAACAAAATATATTCAACATGTTTTAATCCGCATGTGTTTTGGGCAGGCCGCTCGTGTCTAACGCTCCCCCTTTGAAGGCGCTAGTTTGTAAGGCAATCTGTACGGCGGAGGCAACGTGGGCCGGCAAGTGCATAGGAGCAGGTGTGTTTTCGTATCCGTGGAAGAATTGAATAAAATAAACT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8468#0 ATGCNCAGCAGAATCCCGAGGTTAACAGAGGCAATTGAACGTCTCGCCTTTTCGTATCNT 60
consensus_8468#1 ------------------------------------------------------------
consensus_8468#0 TTTTTCGGGGACCGCAACGAAACTAAACTAATTAAAACATAGGAAATTGTTGTTAGCGCG 120
consensus_8468#1 ------------------------------------------------------------
consensus_8468#0 TTGTTCTTGTATCAAACACACACAGAGTCGCATCACAGTCGCAGCATGAGGATGGTGCGA 180
consensus_8468#1 ------------------------------------------------------------
consensus_8468#0 TCCTTCGTCCGGTCACACTTTAAGCTGCTGGCGGCGGTACTGCTGGCCGGTCTGGCCGTG 240
consensus_8468#1 ------------------------------------------------------------
consensus_8468#0 AGTATGGTCGAGGCCGAGAAGGAAATACCACTGACCAAGTTCAGCCAAGATGTTGGCAAT 300
consensus_8468#1 ------------------------------------------------------------
consensus_8468#0 TACGGTGCAACGATGACGTTCCTGTACTGTTATTCCTGCGGGTATCGCAAAGCGTTCGAC 360
consensus_8468#1 ------------------------------------------------------------
consensus_8468#0 GACTACCACAACCTCATCCTGGAGAAGTATCCGGAAATTACGATACGGGGCAGCAACTAC 420
consensus_8468#1 ------------------------------------------------------------
consensus_8468#0 GATCCGTCCGGCGTGAACATGCTGCTGTCGAAGGTGCTGCTGGTGACGAAGCTGCTGCTG 480
consensus_8468#1 ------------------------------------------------------------
consensus_8468#0 ATCGCCGCCCTGATGTCGAACTACGACATCGGGCGCTACATCGGCAACCCGTTTGCCGGC 540
consensus_8468#1 ------------------------------------------------------------
consensus_8468#0 TGGTGGCAATGGTGCTTCAACAACAAGCTGTACGCCTCGATGATGATCTTCTTCCTCGGC 600
consensus_8468#1 ------------------------------------------------------------
consensus_8468#0 AACACGCTGGAAGCGCAGCTAATATCATCCGGTGCGTTCGAGATAACGCTGAACGATGTG 660
consensus_8468#1 ------------------------------------------------------------
consensus_8468#0 CCGGTGTGGTCGAAGCTGGAGACGGGCCGGTTTCCTGCGCCACAGGAGATGTTCCAAATC 720
consensus_8468#1 ------------------------------------------------------------
consensus_8468#0 ATCGACAATCACCTACAGTTTGCCAACAAGATCGAGCCAAATCCGGATTTCGTGAAATAA 780
consensus_8468#1 ---------------CCGCCCACGCGTCCGATCGAGCCAAATCCGGATTTCGTGAAATAA 45
* * * *******************************
consensus_8468#0 GCGGCTCGTTGCCAGCAAGGCCAGTCATCCTACACTACTCTCGGCAGTGGTTCACTTATT 840
consensus_8468#1 GCGACTCGTTGCCAGCAAGGGCAGTCATCCTACACTACTCTCGGCAGTGGTTCACTTATT 105
*** **************** ***************************************
consensus_8468#0 ATTATTGTTTGTTAGTGTTTTCTTGTCAGTTGCCTTACACCGCGGTGTTCCACAATTGTT 900
consensus_8468#1 ATTATTGTTTGTTAGTGTTTTCTTGTCAGTTGCCTTACACCACGGTGTTCCACAATTGTT 165
***************************************** ******************
consensus_8468#0 TCCAAGTATCGAACAAGGATTATTATTTGCTATAAAGCTGGATGAAGGGTAAATGTATAA 960
consensus_8468#1 TCTAAGTATCGAACAACGATTATTATTTGCTATTAAGCAGGATGAAGGGTAAATGTACAA 225
** ************* **************** **** ****************** **
consensus_8468#0 TTGGAAAAGGATTCAGTTTTAATTTTCTTCGTTTTCCCCGTCGTACATCATTGAACATTT 1020
consensus_8468#1 TTGGAAAAGGATTCAGTTTTAATTTTCTTTGTTTTCCCCATCGTACATCATTGAACATTT 285
***************************** ********* ********************
consensus_8468#0 GCAGCACAGGG-ATATGTTTGAAATTTTTGTTTTATTTATTTCCCTGTTTTGCGTAAGAA 1079
consensus_8468#1 GCAGCACAGGGTGTATGTTTGAAATTTTTGTTTTATTTATTTCCCTGTTTTGCGTAAGAA 345
*********** ***********************************************
consensus_8468#0 TTTAAATACTCCACACGTTTCCCCTTACGAAATGCAGCAAAACGTCTAAACAAAATATAT 1139
consensus_8468#1 TTTAAATACTCCACACGTTTCCCCTTACGAAATGCAGCAAAACGTCTCAACAAAATATAT 405
*********************************************** ************
consensus_8468#0 TCAACATGTTTTAATCCGCATGTGTTTTGGGCAGGCCGCTCGTGTCTAACGCTCCCCCTT 1199
consensus_8468#1 TCAACATGTTTTAATCCGCATGTGTTTTGGGCAGGCCGCTCGTGTCTAACGCTCCCCCTT 465
************************************************************
consensus_8468#0 TGAAGGCGCTAGTTTGTAAGGCAATCTGTACGGCGGAGGCAACGTGGGCCGGCAAGTGCA 1259
consensus_8468#1 TGAAGGCGCTAGTTTGTAAGGCAATCTGTACGGCGGAGGCAACGTGGGCCGGCAAGTGCA 525
************************************************************
consensus_8468#0 TAGGAGCAGGTGTGTTTTCGTATCCGTGGAAGAATTGAGGGGACTAAACTAAAACCAAAT 1319
consensus_8468#1 TAGGAGCAGGTGTGTTTTCGTATCCGTGGAAGAATTGAATAAAATAAACT---------- 575
************************************** * ******
consensus_8468#0 AAACCCACAAAAAA 1333
consensus_8468#1 --------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||