cluster # 8470

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Anopheles gambiae
cluster # 8470 cluster # 8470 Sequences # 10 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8470#0 length = 999 sequences # 8

consensus_8470#1 length = 378 sequences # 2

consensusID : consensus_8470#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 999
fasta sequence

                              [GGAACCGGCACAACAACAAACCAGTGGAAAAGCGGAAAATCACGGCAAACATGCCAGAAACGATGCTTGCCCGCATCCTAAAGCCACAAAGCTCGGTGCGGTGTGTTCCGTCCCGGCTGGCGATCGAGAGGTTGTTTGGAGTCGCGGCCGCGGCGTTCCGTGCCTCTGTGCAGCAGTACGACATCCGACCGCTGAATCTGCCTCTCGCGGGAACGGTCGGCACCAATACTAGCAACGCCGGCCCGGTTCCGAAGTCGCCCGAGTACCGCGTGCACCGAACCGTCC-CGTATCGAACCTACGCGAGTGCGGCCATTATCAAAAAGAAAAAGATGCTTGCTAAACTGACCGAAGCGCAGCGTACGGAGCTGCTGACCCCGCTGTTCGCCGCCGGCTGGACCATGGTGAAGGACCGGGATGCCATCTACAAGGAGTACCTGTTCGGGGACTTTAACGAAGCGTTCGGCTTCATGACGCGCGTC-GCACTCAAGGCGGACAAGATGGACCACCATCCGGAGTGGTTCAACGTGTACAACAAGGTGCAGGTGACGCTCGCGACCCACGACTGTGCCGGCCTGAGCGAGCGTGACGTGAAGCTGGCCCAGTTCCTC-GACCAGGCTGCCGCTGTTGCCAAGTAAGCGGAATTGATTAGGCAGATAGGGAAAGAAAGGGAGGAA--GGGGGGGGGGAGCTTACGTGTTGCTAAGCAGAGGAGAGTGGATTGGCTGTTAGGAAATGGTACCCCGTTCGTCTGTTGGTTGCATTTTGATGCAAGAAAAAAAAGGGGAAAATCTGTGTTGGAGCAACGGAGCGCGCACGCCTACTGTAAAACAAAAAGAAAAATGGCCTCCACGTTGGTGACAACAAGGACGACCATGGTACCGATAATCTCGGCCGCTCAAACTTAAATGCTCCGTTTCGTTTCTTTCGTTTTTTTGTTAAATAAAAACATGAAATTCATACGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGCACAGGG]

[+] EMBL CNS09L1K             [GGAACCGGCACAACAACAAACCAGTGGAAAAGCGGAAAATCACGGCAAACATGCCAGAAACGATGCTTGCCCGCATCCTAAAGCCACAAAGCTCGGTGCGGTGTGTTCCGTCCCGGCTGGCGATCGAGAGGTTGTTTGGAGTCGCGGCCGCGGCGTTCCGTGCCTCTGTGCAGCAGTACGACATCCGACCGCTGAATCTGCCTCTCGCGGGAACGGTCGGCACCAATACTAGCAACGCCGGCCCGGTTCCGAAGTCGCCCGAGTACCGCGTGCACCGAACCGTCC CGTATCGAACCTACGCGAGTGCGGCCATTATCAAAAAGAAAAAGATGCTTGCTAAACTGACCGAAGCGCAG GATCGGAGCTGCTGACCCCGCTGTTCGCCGCCGGCTGGACCATGGTGAAGGACCGGGATGCCATCTACAAGGAGTACCTGTTCGGGGACTTTAACGAAGCGTTCGGCTTCATGACGCGCGTCGGCACTCAAGGCGGACAAGATGGACCACCATCCGGAGTGGTTCAACGTGTACAACAAGGTGCAGGTGACGCTCGCGACCCACGACTGTGCCGGCCTGAGCGAGCGTGACGTGAAGCTGGCCCAGTTCCTC GACCAGGCTGCCGCTGTTGCCAAGTAAGCGGAATTGATTAGGCAGATAGGGAAAGACAGGGAGGAA  GGGGGGGGGGAGCTTACGTGTTGCTAAGCAGAGGAGAGTGGATTGGCTGTTAGGAAATGGTACCCCGTTCGTCTGTTGGTTGCATTTTGATGCAAGAAAAAAAAGGGGAAAATCTGTGTTGGAGCAACGGAGCGCGCACGCCTACTGTAAAACAAAAAGAAAAATGGCCTCCACGTTGGTGACAACAAGGACGACCATGGTACCGATAATCTCGGCCGCTCAAACTTAAATGCTCCGTTTCGTTTCTTTCGTTTTTTTGTTAAATAAAAACATGAAATTCATACGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGCACAGGG]
[-] EMBL CNS08R47             [                CAAACCAGTGGAAAAGCGGAAAATCACGGCAAACATGCCAGAAACGATGCTTGCCCGCATCCTAAAGCCACAAAGCTCGGTGCGGTGTGTTCCGTCCCGGCTGGCGATCGAGAGGTTGTTTGGAGTCGCGGCCGCGGCGTTCCGTGCCTCTGTGCAGCAGTACGACATCCGACCGCTGAATCTGCGTCTCGCGGGAACGGTCGGCACTTTTACTAGCAACGCCGGCCCGGTTCCGAAGTCGCCCGAGTACCGCGTGCACCGAACCGTCC CGTATCGAACCTACGCGAGTGCGGCCATTATCAAAAAGAAAAAGATGCTTGCTAAACTGACCGAAGCGCAGCGTACGGAGCTGCTGACCCCGCTGTTCGCCGCCGGCTGGACCATGGTGAAGGACCGGGATGCCATCTACAAGGAGTACCTGTTCGGGGACTTTAACGAAGCGTTCGGCTTCATTACGCGCGTC GCACTCAAGGCGGACAAGATGGACCACCATCCGGAGTGGTTCAACGTGTACAACAAGGTGCAGGTGATGCTCGCGACCCACGACTGTGCCGGCCTGAGCGAGCGTGACGTGAAGCTGGCCCAGTTCCTC GACCAGGCTGCCGCTGTTGCCAAGTAAGCGGAATTGATTAGGCAGATAGGGAAAGAAAGGGAGGAA  GGGGGGGGGGTGC                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL BX608706             [                                                                                                                               GAGGTTGTTTGGAGTCGCGGCCGCGGCGTTCCGTGCCTCTGTGCAGCAGTACGACATCCGACCGCTGAATCTGCCTCTCGCGGGAACGGTCGGCACCAATACTAGCAACGCCGGCCCGGTTCCGAAGTCGCCCGAGTACCGCGTGCACCGAACCGTCC CGTATCGAACCTACGCGAGTGCGGCCATTATCAAAAAGAAAAAGATGCTTGCTAAACTGACCGAAGCGCAGCGTACGGAGCTGCTGACCCCGCTGTTCGCCGCCGGCTGGACCATGGTGAAGGACCGGGATGCCATCTACAAGGAGTACCTGTTCGGGGACTTTAACGAAGCGTTCGGCTTCATGACGCGCGTC GCACTCAAGGCGGACAAGATGGACCACCATCCGGAGTGGTTCAACGTGTACAACAAGGTGCAGGTGACGCTCGCGACCCACGACTGTGCCGGCCTGAGCGAGCGTGACGTGAAGCTGGCCCAGTTCCTC GACCAGGCTGCCGCTGTTGCCAAGTAAGCGGAATTGATTAGGCAGATAGGGAAAGAAAGGGAGGAA  GGGGGGGGGGA                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL BM603757             [                                                                                                                                                                                                                                                      acgtacAGTCGCCCGAGTACCGCGTGCACCGAACCGTCC CGTATCGAACCTACGCGAGTGCGGCCATTATCAAAAAGAAAAAGATGCTTGCTAAACTGACCGAAGCGCAGCGTACGGAGCTGCTGACCCCGCTGTTCGCCGCCGGCTGGACCATGGTGAAGGACCGGGATGCCATCTACAAGGAGTACCTGTTCGGGGACTTTAACGAAGCGTTCGGCTTCATGACGCGCGTC GCACTCAAGGCGGACAAGATGGACCACCATCCGGAGTGGTTCAACGTGTACAACAAGGTGCAGGTGACGCTCGCGACCCACGACTGTGCCGGCCTGAGCGAGCGTGACGTGAAGCTGGCCCAGTTCCTCTCACCAGGCTGCCGCTGTTGCCAAGTAAGCGGAATTGATTAGGCAGATAGGGAAAGAAAGGGAGGAAGGGGGGGGGGGGAGCTTACTTGTTGCTAATCAGAGGAGAGTGGATTGGCTGTTAGGAAATGGTACCCCGTTC                                                                                                                                                                                                                                                               ]
[+] EMBL BM645038             [                                                                                                                                                                                                                                                    ccgcgtacAGTCGCCCGAGTACCGCGTGCACCGAACCGTCC CGTATCGAACCTACGCGAGTGCGGCCATTATCAAAAAGAAAAAGATGCTTGCTAAACTGACCGAAGCGCAGCGTACGGAGCTGCTGACCCCGCTGTTCGCCGCCGGCTGGACCATGGTGAAGGACCGGGATGCCATCTACAAGGAGTACCTGTTCGGGGACTTTAACGAAGCGTTCGGCTTCATGACGCGCGTC GCACTCAAGGCGGACAAGATGGACCACCATCCGGAGTGGTTCAACGTGTACAACAAGGTGCAGGTGACGCTCGCGACCCACGACTGTGCCGGCCTGAGCGAGCGTGACGTGAAGCTGGCCCAGTTCCTC GACCAGGCTGCCGCTGTTGCCAAGTAAGCGGAATTGATTAGGCAGATAGGGAAAGAAAGG                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CNS08R46             [                                                                                                                                                                                                                                                                                CACCGAACCGTCC CGTATCGAACCTACGCGAGTACGGCCATTATCAAAAAGAAAAAGATGCTTGCTAAACTGACCGAAGCGCAG GATCGGAGCTGCTGACCCCGCTGTTCGCCGCCGGCTGGACCATGGTGAAGGACCGGGATGCCATCTACAAGGAGTACCTGTTCGGGGACTTTAACGAAGCGTTCGGCTTCATGACGCGCGTC GCACTCAAGGCGGACAAGATGGACCACCATCCGGAGTGGTTCAACGTGTACAACAAGGTGCAGGTGACGCTCGCGACCCACGACTGTACCGGCCTGAGCGAGCGTGACGTGAAGCTGGCCCAGTTCCTC GACCAGGCTGC                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL BM594853             [                                                                                                                                                                                                                                                                               ccgcccacgCGTCCGCGTATCGAACCTACGCGAGTGCGGCCATTATCAAAAAGAAAAAGATGCTTGCTAAACTGACCGAAGCGCAGCGTACGGAGCTGCTGACCCCGCTGTTCGCCGCCGGCTGGACCATGGTGAAGGACCGGGATGCCATCTACAAGGAGTACCTGTTCGGGGACTTTAACGAAGCGTTCGGCTTCATGACGCGCGTC GCACTCAAGGCGGACAAGATGGACCACCATCCGGAGTGGTTCAACGTGTACAACAAGGTGCAGGTGACGCTCGCGACCCACGACTGTGCCGGCCTGAGCGAGCGTGACGTGAAGCTGGCCCAGTTCCTC GACCAGGCTGCCGCTGTTGCCAAGTAAGCGGAATTGATTAGGCAGATAGGGAAAGAAAGGGAGGAA   GGGGGGGGGAGCTTACGTGTTGCTAAGCAGAGGAGAGTGGATTGGCTGTTAGGAAATGGTACCCCGTTCGTCTGTTGGTTGCATTTTGATGCAAGAAAAAAAAGGGGAAAATCTGTGTTGGAGCAACGGAGCGCGCACGCATACTGTAAAACAAAAAGAAAAATGGCCTCCACGTTGGTGACAACAAGGACGACCATGGTACCGATAATCTCGGCCGCTCAAACTTAAATGCTCCGTTTCGT                                                                                  ]
[-] EMBL CNS09L1L             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ATAGGGAAAGAAAGGGAGGAA  GGGGGGGGGGGGCTTACGTGTTGCTAAGCAGAGGAGAGTGGATTGGCTGTTAGGAAATGGTACCCCCTTCGTCTGTTGGTTGCATTTTGATGCAAGAAAAAAAAGGGGAAAATCTGTGTTGGAGCAACGGAGCGCGCACGCCTACTGTAAAACAAAAAGAAAAATGGCCTCCACGTTGGTGACAACAAGGACGACCATGGTACCGATAATCTCGGCCGCTCA                                                                                                       ]




>consensus_8470#0
GGAACCGGCACAACAACAAACCAGTGGAAAAGCGGAAAATCACGGCAAACATGCCAGAAA
CGATGCTTGCCCGCATCCTAAAGCCACAAAGCTCGGTGCGGTGTGTTCCGTCCCGGCTGG
CGATCGAGAGGTTGTTTGGAGTCGCGGCCGCGGCGTTCCGTGCCTCTGTGCAGCAGTACG
ACATCCGACCGCTGAATCTGCCTCTCGCGGGAACGGTCGGCACCAATACTAGCAACGCCG
GCCCGGTTCCGAAGTCGCCCGAGTACCGCGTGCACCGAACCGTCCCGTATCGAACCTACG
CGAGTGCGGCCATTATCAAAAAGAAAAAGATGCTTGCTAAACTGACCGAAGCGCAGCGTA
CGGAGCTGCTGACCCCGCTGTTCGCCGCCGGCTGGACCATGGTGAAGGACCGGGATGCCA
TCTACAAGGAGTACCTGTTCGGGGACTTTAACGAAGCGTTCGGCTTCATGACGCGCGTCG
CACTCAAGGCGGACAAGATGGACCACCATCCGGAGTGGTTCAACGTGTACAACAAGGTGC
AGGTGACGCTCGCGACCCACGACTGTGCCGGCCTGAGCGAGCGTGACGTGAAGCTGGCCC
AGTTCCTCGACCAGGCTGCCGCTGTTGCCAAGTAAGCGGAATTGATTAGGCAGATAGGGA
AAGAAAGGGAGGAAGGGGGGGGGGAGCTTACGTGTTGCTAAGCAGAGGAGAGTGGATTGG
CTGTTAGGAAATGGTACCCCGTTCGTCTGTTGGTTGCATTTTGATGCAAGAAAAAAAAGG
GGAAAATCTGTGTTGGAGCAACGGAGCGCGCACGCCTACTGTAAAACAAAAAGAAAAATG
GCCTCCACGTTGGTGACAACAAGGACGACCATGGTACCGATAATCTCGGCCGCTCAAACT
TAAATGCTCCGTTTCGTTTCTTTCGTTTTTTTGTTAAATAAAAACATGAAATTCATACGA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGCACAGGG

consensusID : consensus_8470#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 378
fasta sequence

                              [CCGCAACGTACAGTCGCCCGAGTACCGCGTGCACCGAACCGTCCCGTATCGAACCTACGCGAGTGCGGCCATTATCAAAAAGAAAAAGATGCTTGCTAAACTGACCGAAGCGCAGCGTACGGAGCTGCTGACCCCGCTGTTCGCCGCCGGCTGGACCATGGTGAAGGACCGGGATGCCATCTACAAGGAGTACCTGTTCGGGGACTTTAACGAAGCGTTCGGCTTCATGACGCGCGTCGCACTCAAGGCGGACAAGATGGACCACCATCCGGAGTGGTTCAACGTGTACAACAAGGTGCAGGTGACGCTCGCGACCCACGACTGTGCCGGCCTGAGCGAGCGTGACGTGAAGCTGGCCCAGTTCCTCGACCAGGGCTG]

[+] EMBL BM591459             [CCGCAACGTACAGTCGCCCGAGTACCGCGTGCACCGAACCGTCCCGTATCGAACCTACGCGAGTGCGGCCATTATCAAAAAGAAAAAGATGCTTGCTAAACTGACCGAAGCGCAGCGTACGGAGCTGCTGACCCCGCTGTTCGCCGCCGGCTGGACCATGGTGAAGGACCGGGATGCCATCTACAAGGAGTACCTGTTCGGGGACTTTAACGAAGCGTTCGGCTTCATGACGCGCGTCGCACTCAAGGCGGACAAGATGGACCACCATCCGGAGTGGTTCAACGTGTACAACAAGGTGCAGGTGACGCTCGCGACCCACGACTGTGCCGGCCTGAGCGAGCGTGACGTGAAGCTGGCCCAGTTCCTCGACCAGGGCTG]
[+] EMBL BM596876             [CCGCAACGTACAGTCGCCCGAGTACCGCGTGCACCGAACCGTCCCGTATCGAACCTACGCGAGTGCGGCCATTATCAAAAAGAAAAAGATGCTTGCTAAACTGACCGAAGCGCAGCGTACGGAGCTGCTGACCCCGCTGTTCGCCGCCGGCTGGACCATGGTGAAGGACCGGGATGCCATCTACAAGGAGTACCTGTTCGGGGACTTTAACGAAGCGTTCGGCTTCATGACGCGCGTCGCACTCAAGGCGGACAAGATGGACCACCATCCGGAGTGGTTCAACGTGTACAACAAGGTGCAGGTGACGCTCGCGACCCACGACTGTGCCGGCCTGAGCGAGCGTGACGTGAAGCTGGCCCAGTTCCTCGACCAGGc   ]




>consensus_8470#1
CCGCAACGTACAGTCGCCCGAGTACCGCGTGCACCGAACCGTCCCGTATCGAACCTACGC
GAGTGCGGCCATTATCAAAAAGAAAAAGATGCTTGCTAAACTGACCGAAGCGCAGCGTAC
GGAGCTGCTGACCCCGCTGTTCGCCGCCGGCTGGACCATGGTGAAGGACCGGGATGCCAT
CTACAAGGAGTACCTGTTCGGGGACTTTAACGAAGCGTTCGGCTTCATGACGCGCGTCGC
ACTCAAGGCGGACAAGATGGACCACCATCCGGAGTGGTTCAACGTGTACAACAAGGTGCA
GGTGACGCTCGCGACCCACGACTGTGCCGGCCTGAGCGAGCGTGACGTGAAGCTGGCCCA
GTTCCTCGACCAGGGCTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8470#0      GGAACCGGCACAACAACAAACCAGTGGAAAAGCGGAAAATCACGGCAAACATGCCAGAAA 60
consensus_8470#1      ------------------------------------------------------------
                                                                                  

consensus_8470#0      CGATGCTTGCCCGCATCCTAAAGCCACAAAGCTCGGTGCGGTGTGTTCCGTCCCGGCTGG 120
consensus_8470#1      ------------------------------------------------------------
                                                                                  

consensus_8470#0      CGATCGAGAGGTTGTTTGGAGTCGCGGCCGCGGCGTTCCGTGCCTCTGTGCAGCAGTACG 180
consensus_8470#1      ------------------------------------------------------------
                                                                                  

consensus_8470#0      ACATCCGACCGCTGAATCTGCCTCTCGCGGGAACGGTCGGCACCAATACTAGCAACGCCG 240
consensus_8470#1      ------------------------------------------------------------
                                                                                  

consensus_8470#0      GCCCGGTTCCGAAGTCGCCCGAGTACCGCGTGCACCGAACCGTCCCGTATCGAACCTACG 300
consensus_8470#1      -CCGCAACGTACAGTCGCCCGAGTACCGCGTGCACCGAACCGTCCCGTATCGAACCTACG 59
                       **         ************************************************

consensus_8470#0      CGAGTGCGGCCATTATCAAAAAGAAAAAGATGCTTGCTAAACTGACCGAAGCGCAGCGTA 360
consensus_8470#1      CGAGTGCGGCCATTATCAAAAAGAAAAAGATGCTTGCTAAACTGACCGAAGCGCAGCGTA 119
                      ************************************************************

consensus_8470#0      CGGAGCTGCTGACCCCGCTGTTCGCCGCCGGCTGGACCATGGTGAAGGACCGGGATGCCA 420
consensus_8470#1      CGGAGCTGCTGACCCCGCTGTTCGCCGCCGGCTGGACCATGGTGAAGGACCGGGATGCCA 179
                      ************************************************************

consensus_8470#0      TCTACAAGGAGTACCTGTTCGGGGACTTTAACGAAGCGTTCGGCTTCATGACGCGCGTCG 480
consensus_8470#1      TCTACAAGGAGTACCTGTTCGGGGACTTTAACGAAGCGTTCGGCTTCATGACGCGCGTCG 239
                      ************************************************************

consensus_8470#0      CACTCAAGGCGGACAAGATGGACCACCATCCGGAGTGGTTCAACGTGTACAACAAGGTGC 540
consensus_8470#1      CACTCAAGGCGGACAAGATGGACCACCATCCGGAGTGGTTCAACGTGTACAACAAGGTGC 299
                      ************************************************************

consensus_8470#0      AGGTGACGCTCGCGACCCACGACTGTGCCGGCCTGAGCGAGCGTGACGTGAAGCTGGCCC 600
consensus_8470#1      AGGTGACGCTCGCGACCCACGACTGTGCCGGCCTGAGCGAGCGTGACGTGAAGCTGGCCC 359
                      ************************************************************

consensus_8470#0      AGTTCCTCGACCAGGCTGCCGCTGTTGCCAAGTAAGCGGAATTGATTAGGCAGATAGGGA 660
consensus_8470#1      AGTTCCTCGACCAGG--GCTG--------------------------------------- 378
                      ***************  ** *                                       

consensus_8470#0      AAGAAAGGGAGGAAGGGGGGGGGGAGCTTACGTGTTGCTAAGCAGAGGAGAGTGGATTGG 720
consensus_8470#1      ------------------------------------------------------------
                                                                                  

consensus_8470#0      CTGTTAGGAAATGGTACCCCGTTCGTCTGTTGGTTGCATTTTGATGCAAGAAAAAAAAGG 780
consensus_8470#1      ------------------------------------------------------------
                                                                                  

consensus_8470#0      GGAAAATCTGTGTTGGAGCAACGGAGCGCGCACGCCTACTGTAAAACAAAAAGAAAAATG 840
consensus_8470#1      ------------------------------------------------------------
                                                                                  

consensus_8470#0      GCCTCCACGTTGGTGACAACAAGGACGACCATGGTACCGATAATCTCGGCCGCTCAAACT 900
consensus_8470#1      ------------------------------------------------------------
                                                                                  

consensus_8470#0      TAAATGCTCCGTTTCGTTTCTTTCGTTTTTTTGTTAAATAAAAACATGAAATTCATACGA 960
consensus_8470#1      ------------------------------------------------------------
                                                                                  

consensus_8470#0      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGCACAGGG 999
consensus_8470#1      ---------------------------------------