These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8473#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1315 fasta sequence [CGAGCAACAAAAAAAACCGACACACCACACTTCATTGTGAATTTACGAAAAACTGGCAACGAACACCGTCATCGT-GA-GA-CGGAGGAA-AAGTGGAAAAGCTTTCTCGTTGCATTGGTTCTGTGAGTCTGAAGGCAAACACGGTGGCAATAGGAAAATTCCAACCCAGTGTCGCTTCAAGGAATCAGG-AAAAAACGGACCTCCAAAACACGCCGGTTGAAGGAGAGGAGCAGCGTTTTGCGGTTGTACGCGTGAAAAACGAACAGGGAAGCGGTGCGGGCCTATTATCAAATCTACACCCGCAGGCGGAGGAGTCTGCAAAGGTCCGGCGGGTGGACGGTGGTGTTTCGTCCTTTCGTCCTTTCGTCGTATCCGCGGCGACGGAATGAAGTGTTTATCCGGTGCGGTGCGACGATAGCCCAACCCCCTCCCACCAATCGGTTTCAAATTTCCCACCACCCCAAAACGACAGTGATAGACACATTTCCCGGGGCACAGCACACCAAGCTAAAGCGGGGCGTGTGTCTATGTATGCGCACCGGTGTGTGTGTCGTACTGANACAATCGATCGTTGGGCTGTGTACACCTTACCGGTTTGTGGGTGNGGTTTGTGTTTTATAATAGACNAAACATCATTAGCCGCGGCCCAACCCACGGGCGGGGACAAAAGGCAAAAAAGGAAATATCAGCGAATTACATCCGGGTCGTCTTCACTTCACCCAGTGCCTCACATACATACACACCAAGCAGCAGGAGCAGCAGCAGCACCAGCATCGCCATGACCGCCA-CCAGCACGACCGAACCGGCGGCATTCGATCACATCGAGACGATTGTCATCGAGGGTCAGCCGACCGACATCGTGTACCATCGGTTTGCGAACAAGCTCTTCCTCATCATCACCCAGCACCAGAAGGTGGCCAACGTGTACACGGTGCGCAGTCACGCCCACAACGATCTGAGCGGGGACGGGCCGGGCGGAGCTGCCGGCGCTGACGGTTCGAACCGCATCTACACCATCAAGCACACGTTCGGCGCCAGCTCGGACGAGGCGGAAGCGGCCATCCGCTATCTGATGAGCTTCCTGCAGCAGAGCGACGAGATCGTCATCACGCTCGGGCTGCGGCGGATCGACAAGGCCACGCTGGACCAGATCGGGGCCCAGCTCCGGAAGATTGTGCTAGGATAGGGCATAAGGGGGAAGTGGCAGAATAATATTCTAACCGTTGGTACATACGTTCCTTTCCGTTCTTAGGAGTTTCTTAAATAAATACGCGTACACACGTTCACGCTTTGGTGGCGCGCCACACAAAAAAAAAAA] [+] EMBL BX602071 [CGAGCAACAAAAAAAACCGACACACCACACTTCATTGTGAATTTACGAAAAACTGGCAACGAACACCGTCATCGT GA GA CGGAGGAA AAGTGGAAAAGCTTTCTCGTTGCATTGGTTCTGTGAGTCTGAAGGCAAACACGGTGGCAATAGGAAAATTCCAACCCAGTGTCGCTTCAAGGAATCAGG AAAAAACGGACCTCCAAAACACGCCGGTTGAAGGAGAGGAGCAGCGTTTTGCGGTTGTACGCGTGAAAAACGAACAGGGAAGCGGTGCGGGCCTATTATCAAATCTACACCCGCAGGCGGAGGAGTCTGCAAAGGTCCGGCGGGTGGACGGTGGTGTTTCGTCCTTTCGTCCTTTCGTCGTATCCGCGGCGACGGAATGAAGTGTTTATCCGGTGCGGTGCGACGATAGCCCAACCCCCTCCCACCAATCGGTTTCAAATTTCCCACCACCCCAAAACGACAGTGATAGACACATTTCCCGGGGCACAGCACACCAAGCTAAAGCGGGGCGTGTGTCTATG ] [+] EMBL BX604170 [ TTGTGAATTTACGAAAAACTGGCAACGAACACCGTCATCGT GA GA CGGAGGAA AAGTGGAAAAGCTTTCTCGTTGCATTGGTTCTGTGAGTCTGAAGGCAAACACGGTGGCAATAGGAAAATTCCAACCCAGTGTCGC TCAAGGAATCAGG AAAAAACGGACCTCCAAAACACGCCGGTTGAAGGAGAGGAGCAGCGT ] [+] EMBL BX624220 [ aCGTAGATGATCGGAGGAATAAGTGGAAAAGCTTTCTCGTTGCATTGGTTCTGTGAGTCTGAAGGCAAACACGGTGGCAATAGGAAAATTCCAACCCAGTGTCGCTTCAAGGAATCAGG AAAAAACGGACCTCCAAAACACGCCGGTTGAAGGAGAGGAGCAGCGTTTTGCGGTTGTACGCGTGAAAAACGAACAGGGAAGCGGTGCGGGCCTATTATCAAATCTACACCCGCAGGCGGAGGAGTCTGCAAAGGTCCGGCGGGTGGACGGTGGTGTTTCGTCCTTTCGTCCTTTCGTCGTATCCGCGGCGACGGAATGAAGTGTTTATCCGGTGCGGTGCGACGATAGCCCAACCCCCTCCCACCAATCGGTNTCAAATTTCCCACCACCCCAAAACGACAGTGATAGACACATTTCCCGGGGCACAGCACACCAAGCTAAAGCGGGGCGTGTGTCTATGTATGCGCACCGGTGTGTGTGTCGTACTGANACAATCGATCGTTGGGCTGTGTACACCTTACCGGTTTGTGGGTGNGGTTTGTGTTTTATAATAGACNAAACATC ] [+] EMBL BX612812 [ AATTCCAACCCAGTGTCGCTTCAAGGAATCAGGAAAAAAACGGACCTCCAAAACACGCCGGTTGAAGGAGAGGAGCAGCGTTTTGCGGTTGTACGCGTGAAAAACGAACAGGGAAGCGGTGCTGGCCTATTATCAAATCTACACCCACAGGCGGAGGAGTCTGCAAAGGCCCAACGGGTGGACGGTGGTGTTTCGTCCTTTCGTCCTTTCGTCGTATCCGCGGCGACGGAATGAAGTGTTTATCCGGTGCGGTGCGACGATAGCCCAACCCCCTCCCACCAATCGGTTTCAAATTTCCCACCACCCCAAAACGACAGTGATAGACACATTTCCCGGGGCACAGCACACCAAGCTAAAGCGGGGCGTGTGTCTATGTATGCGCACCGGTGTGTGTGTCGTACTGAAACAATCGATCGTTGGCCTGTGTACACCTTACCGGTTTGT GGTGGGGTTTGTGTTTTATTTTAGAC AAACATCATTAGCCGCGGCCCAACCCACGGGCGGGGACAAAAGGCAAAAAAGGAAATATCAGCGAATTACATCCGGGTCGTCTTCACTTCACCCAGTGCCTCACATACACATACACCGAGCAGCAGGAGCAGCAGCAGCACCAGCATCACCATGACCGCCACCCAGCACGACCGAACCGGCGGCATTCGATCACATCGAGACGATTGTCATCGAGGGTCAGCCGACCGACATCGTGTACCATCGGTTTGCCAACAAGCTCTTCCTCATCATCACCCAGCACCAAAAGGTG ] [+] EMBL BX621854 [ GTGCCTCACACACATACACACCAAGCAGCAGGAGCAGCAGCAGCACCAGCATCGCCATGACCGCCA CCAGCACGACCGAACCGGCGGCATTCGATCACATCGAGACGATTGTCATCGAGGGTCAGCCGACCGACATCGTGTACCATCGGTTTGCGAACAAGCTCTTCCTCATCATCACCCAGCACCAGAAGGTGGCCAACGTGTACACGGTGCGCAGTCACGCCCACAACGATCTGAGCGGGGACGGGCCGGGCGGAGCTGCCGGCGCTGACGGTTCGAACCGCATCTACACCATCAAGCACACGTTCGGCGCCAGCTCGGACGAGGCGGAAGCGGCCATCCGCTATCTGATGAGCTTCCTGCAGCAGAGCGACGAGATCGTCATCACGCTCGGGCTGCGGCGGATCGACAAGGCCACGCTGGACCAGATCGGGGCCCAGCTCCGGAAGATTGTGCTAGGATAGGGCATAAGGGGGAAGTGGCAGAATAATATTCTAACCGTTGGTACATACGTTCCTTTCCGTTCTTAGGAGTTTCTTAAATAAATACGCGTACACACGTTCACGCTTTGGTGGCGCGCCACA ] [+] EMBL BX608682 [ TACACACCAAGCAGCAGGAGCAGCAGCAGCACCAGCATCGCCATGACCGCCA CCAGCACGACCGAACCGGCGGCATTCGATCACATCGAGACGATTGTCATCGAGGGTCAGCCGACCGACATCGTGTACCATCGGTTTGCGAACAAGCTCTTCCTCATCATCACCCAGCACCAGAAGGTGGCCAACGTGTACACGGTGCGCAGTCACGCCCACAACGATCTGAGCGGGGACGGGCCGGGCGGAGCTGCCGGCGCTGACGGTTCGAACCGCATCTACACCATCAAGCACACGTTCGGCGCCAGCTCGGACGAGGCGGAAGCGGCCATCCGCTATCTGATGAGCTTCCTGCAGCAGAGCGACGAGATCGTCATCACGCTCGGGCTGCGGCGGATCGACAAGGCCACGCTGGACCAGATCGGGGCCCAGCTCCGGAAGATTGTGCTAGGATAGGGCATAAGGGGGAAGTGGCAGAATAATATTCTAACCGTTGGTACATACGTTCCTTTCCGTTCTTAGGAGTTTCTTAAATAAATACGCGTACACACGTTCACGCTTTGGTGG ] [-] EMBL AGA281035 [ ACGCTCGGGCTGCGGCGGATCGACAAGGCCACGCTGGACCAGATCGGGGCCCAGCTCCGGAAGATTGTGCTAGGATAGGGCATAAGGGGGATGCGGCAGAGGAATATTCTAACCGTTGGTACATACGTTTCTTTCCGTTCTTAGGAGTTTCTTAAATAAATACGCGTACACACGTTCACGCTTTGGTGGCGCGCCACACAAAAAA ] [+] EMBL AGA282663 [ CTGCGGCGGATCGACAAGGCCACGCTGGACCAGATCGGGGCCCAGCTCCGGAAGATTGTGCTAGGATAGGGCATAAGGGGGATGCGGCAGAGGAATATTCTAACCGTTGGTACATACGTTTCTTTCCGTTCTTAGGAGTTTCTTAAATAAATACGCGTACACACGTTCACGCTTTGGTGGCGCGCCACACANNANAAAAAA] consensusID : consensus_8473#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 693 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGCGAAAAACTGGCAACGAACACCGTCATCGTGAGACGGAGGAAAAGTGGAAAAGCTTTCTCGTTGCATTGGTTCTGTGAGTCTGAAGGCAAACACGGTGGCAATAGGAAAATTCCAACCCAGTGTCGCTTCAAGGAATCAGGAAAAAACGGACCTCCAAAACACGCCGGTTGAAGGAGAGGAGCAGCGTTTTGCGGTTGTACGCGTGAAAAACGAACAGGGAAGCGGTGCGGGCCTATTATCAAATCTACACCCGCAGGCGGAGGAGTCTGCAAAGGTCCGGCGGGTGGACGGTGGTGTTTCGTCCTTTCGTCCTTTCGTCGTATCCGCGGCGACGGAATGAAGTGTTTATCCGGTGCGGTGCGACGAATAGCCCAACCCCCTCCCACCAATCGGTTTCAAATTTCCCACCACCCCAAAACGACAGTGATAGACACATTTCCCGGGGCACAGCACACCAAGCTAAAGCGGGGCGTGTGTCTATGTATGCGCACCGGTGTGTGTGTCGTACTGAAACAATCGATCGTTGGCCTGTGTACACCTTACCGGTTTGTGGGGGGGGGTTTTGTGTTTTATTTTAGACAAACATCATTAGCCGCGGCCCAACCCACGGGCGGGGACAAAAGGCAAAAACGGAAATATCAGCGAATTACATCCGGGTCGTCTTC] [+] EMBL BM577231 [CCGCCCACGCGTCCGCCCACGCGTCCGCGAAAAACTGGCAACGAACACCGTCATCGTGAGACGGAGGAAAAGTGGAAAAGCTTTCTCGTTGCATTGGTTCTGTGAGTCTGAAGGCAAACACGGTGGCAATAGGAAAATTCCAACCCAGTGTCGCTTCAAGGAATCAGGAAAAAACGGACCTCCAAAACACGCCGGTTGAAGGAGAGGAGCAGCGTTTTGCGGTTGTACGCGTGAAAAACGAACAGGGAAGCGGTGCGGGCCTATTATCAAATCTACACCCGCAGGCGGAGGAGTCTGCAAAGGTCCGGCGGGTGGACGGTGGTGTTTCGTCCTTTCGTCCTTTCGTCGTATCCGCGGCG ] [+] EMBL BM606721 [ CCGCGGACGCGT GGGAAAAACTGGCAACGAACACCGTCATCGTGAGACGGAGGAAAAGTGGAAAAGCTTTCTCGTTGCATTGGTTCTGTGAGTCTGAAGGCAAACACGGTGGCAATAGGAAAATTCCAACCCAGTGTCGCTTCAAGGAATCAGGAAAAAACGGACCTCCAAAACACGCCGGTTGAAGGAGAGGAGCAGCGTTTTGCGGTTGTACGCGTGAAAAACGAACAGGGAAGCGGTGCGGGCCTATTATCAAATCTACACCCGCAGGCGGAGGAGTCTGCAAAGGTCCGGCGGGTGGACGGTGGTGTTTCGTCCTTTCGTCCTTTCGTCGTATCCGCGGCGACGGAATGAAGTGTTTATCCGGTGCGGTGCGACGAATAGCCCAACCCCCTCCCACCAATCGGTTTCAAATTTCCCACCACCCCAAAACGACAGTGATAGACACATTTCCCGGGGCACAGCACACCAAGCTAAAGCGGGGCGTGTGTCTATGTATGCGCACCGGTGTGTGTGTCGTACTGAAACAATCGATCGTTGGCCTGTGTACACCTTACCGGTTTGTGGGGGGGGGTTTTGTGTTTTATTTTAGACAAACATCATTAGCCGCGGCCCAACCCACGGGCGGGGACAAAAGGCAAAAACGGAAATATCAGCGAATTACATCCGGGTCGTCTTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8473#0 CGAGCAACAAAAAAAACCGACACACCACACTTCATTGTGAATTTACGAAAAACTGGCAAC 60 consensus_8473#1 -----------------CCGCCCAC-GCGTCCGCCCACGCGTCCGCGAAAAACTGGCAAC 42 * * *** * * * *************** consensus_8473#0 GAACACCGTCATCGTGAGACGGAGGAAAAGTGGAAAAGCTTTCTCGTTGCATTGGTTCTG 120 consensus_8473#1 GAACACCGTCATCGTGAGACGGAGGAAAAGTGGAAAAGCTTTCTCGTTGCATTGGTTCTG 102 ************************************************************ consensus_8473#0 TGAGTCTGAAGGCAAACACGGTGGCAATAGGAAAATTCCAACCCAGTGTCGCTTCAAGGA 180 consensus_8473#1 TGAGTCTGAAGGCAAACACGGTGGCAATAGGAAAATTCCAACCCAGTGTCGCTTCAAGGA 162 ************************************************************ consensus_8473#0 ATCAGGAAAAAACGGACCTCCAAAACACGCCGGTTGAAGGAGAGGAGCAGCGTTTTGCGG 240 consensus_8473#1 ATCAGGAAAAAACGGACCTCCAAAACACGCCGGTTGAAGGAGAGGAGCAGCGTTTTGCGG 222 ************************************************************ consensus_8473#0 TTGTACGCGTGAAAAACGAACAGGGAAGCGGTGCGGGCCTATTATCAAATCTACACCCGC 300 consensus_8473#1 TTGTACGCGTGAAAAACGAACAGGGAAGCGGTGCGGGCCTATTATCAAATCTACACCCGC 282 ************************************************************ consensus_8473#0 AGGCGGAGGAGTCTGCAAAGGTCCGGCGGGTGGACGGTGGTGTTTCGTCCTTTCGTCCTT 360 consensus_8473#1 AGGCGGAGGAGTCTGCAAAGGTCCGGCGGGTGGACGGTGGTGTTTCGTCCTTTCGTCCTT 342 ************************************************************ consensus_8473#0 TCGTCGTATCCGCGGCGACGGAATGAAGTGTTTATCCGGTGCGGTGCGACGA-TAGCCCA 419 consensus_8473#1 TCGTCGTATCCGCGGCGACGGAATGAAGTGTTTATCCGGTGCGGTGCGACGAATAGCCCA 402 **************************************************** ******* consensus_8473#0 ACCCCCTCCCACCAATCGGTTTCAAATTTCCCACCACCCCAAAACGACAGTGATAGACAC 479 consensus_8473#1 ACCCCCTCCCACCAATCGGTTTCAAATTTCCCACCACCCCAAAACGACAGTGATAGACAC 462 ************************************************************ consensus_8473#0 ATTTCCCGGGGCACAGCACACCAAGCTAAAGCGGGGCGTGTGTCTATGTATGCGCACCGG 539 consensus_8473#1 ATTTCCCGGGGCACAGCACACCAAGCTAAAGCGGGGCGTGTGTCTATGTATGCGCACCGG 522 ************************************************************ consensus_8473#0 TGTGTGTGTCGTACTGANACAATCGATCGTTGGGCTGTGTACACCTTACCGGTTTGTGGG 599 consensus_8473#1 TGTGTGTGTCGTACTGAAACAATCGATCGTTGGCCTGTGTACACCTTACCGGTTTGTGGG 582 ***************** *************** ************************** consensus_8473#0 TGNGG--TTTGTGTTTTATAATAGACNAAACATCATTAGCCGCGGCCCAACCCACGGGCG 657 consensus_8473#1 GGGGGGTTTTGTGTTTTATTTTAGACAAA-CATCATTAGCCGCGGCCCAACCCACGGGCG 641 * ** ************ ***** ** ****************************** consensus_8473#0 GGGACAAAAGGCAAAAAAGGAAATATCAGCGAATTACATCCGGGTCGTCTTCACTTCACC 717 consensus_8473#1 GGGACAAAAGGCAAAAACGGAAATATCAGCGAATTACATCCGGGTCGTCTTC-------- 693 ***************** ********************************** consensus_8473#0 CAGTGCCTCACATACATACACACCAAGCAGCAGGAGCAGCAGCAGCACCAGCATCGCCAT 777 consensus_8473#1 ------------------------------------------------------------ consensus_8473#0 GACCGCCACCAGCACGACCGAACCGGCGGCATTCGATCACATCGAGACGATTGTCATCGA 837 consensus_8473#1 ------------------------------------------------------------ consensus_8473#0 GGGTCAGCCGACCGACATCGTGTACCATCGGTTTGCGAACAAGCTCTTCCTCATCATCAC 897 consensus_8473#1 ------------------------------------------------------------ consensus_8473#0 CCAGCACCAGAAGGTGGCCAACGTGTACACGGTGCGCAGTCACGCCCACAACGATCTGAG 957 consensus_8473#1 ------------------------------------------------------------ consensus_8473#0 CGGGGACGGGCCGGGCGGAGCTGCCGGCGCTGACGGTTCGAACCGCATCTACACCATCAA 1017 consensus_8473#1 ------------------------------------------------------------ consensus_8473#0 GCACACGTTCGGCGCCAGCTCGGACGAGGCGGAAGCGGCCATCCGCTATCTGATGAGCTT 1077 consensus_8473#1 ------------------------------------------------------------ consensus_8473#0 CCTGCAGCAGAGCGACGAGATCGTCATCACGCTCGGGCTGCGGCGGATCGACAAGGCCAC 1137 consensus_8473#1 ------------------------------------------------------------ consensus_8473#0 GCTGGACCAGATCGGGGCCCAGCTCCGGAAGATTGTGCTAGGATAGGGCATAAGGGGGAA 1197 consensus_8473#1 ------------------------------------------------------------ consensus_8473#0 GTGGCAGAATAATATTCTAACCGTTGGTACATACGTTCCTTTCCGTTCTTAGGAGTTTCT 1257 consensus_8473#1 ------------------------------------------------------------ consensus_8473#0 TAAATAAATACGCGTACACACGTTCACGCTTTGGTGGCGCGCCACACAAAAAAAAAAA 1315 consensus_8473#1 ---------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||