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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8566#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1244 fasta sequence
[TGCCCGCGCGGCACCACCAAGGTCGACTCCTGGTGGCGCTGGCTGTTCTGGCACTGTAGCTACTGCTTCTGCTACTGCGACGATGCCACTCCGATCGCTACGTCAGCCTGCGCGAATCCGTCTCGGACATGGAGCAGAACCGTGTGGTAACCGGGCTGCGCTTTGTGAAGCGCCGCCAGATGGTGCATCTGATCGTGCAGCAGGGGCTGCTGCTGCCCGGGGGCGAGATCGCCAACAGCACGCTCGAGTGGGTCGTGCCGAAACCGTTCACCCACACGGACAAGGGCGTGCGGGACGGGCACGACTACCACACGCTCT-CGTACGATCGGCGCGCGATCGACCTGGACGACGTGCACGTACCGCCCGGCTACGTGGTGACCGGCGTCCAGTTCCGCGTGCTCGGCGCCCGGCTCAACCTGCTGCTGCGCATGACCGAGATGAACTTTACCGCTGGCAAGTTGGTCGGCCTGGACGCGTCCATCTGGAGCGGCAGCTTAGAGACGGAACGGACCGAAATCCCGCTCAAATACATGGACGTGCCGACGCTCGCACCGGCCAAATCGGTCCCCATGTCCACCCAGAACCAGTACCTGCGCTTCGGGCCGACGGGCGGCCGGGCGGACGCCGCCCAGACGACCATCCCGTTCCTGGACGCGCAGCCGGTCAGCCC--GGTGCGGCCGACGCCGCTCGCCGGCGCCGGCCTCATGTACAAGGGCGTCCCGAAGTACGGCGGCTTTGTCGCGCCCAAGATCATGACGTACAACTTCGGTGCGCACATCCAGGACCCGACCGACGATTGGTTTGCGGCGGAGCTGGAAGCACGCAGCAGTGCTGCTGCCGGCGGTGGCAGCGACAGCGGCTAGTCGAAATAAATGCTACGAAGAGATAAAACAAAACAAAACAAAAAAAAACAGAAATGCCAACTGCCGACGCCGCCCCCCAAACACAGAGATGCAAAAAAGCACGTCTATGCAGGGGTTTCAGCAATGCCTGAAGGCTCTCCACCACCTCTCCAACGGGGATGGATAGTTCAGCTCGTTCAGCGAGCCAGTTTACCAAAAGAAGCAAAGCAAACTAAGGGAAAAAGTCAAAAGTAACAACAACAAAAACTCCCAATGGTAGTAATGCATCCGAAACCGGATACTTATAGCGAGTGAGAGCGAGCCAGCGCAGATATTCTCTGGTAGATAAGCAAATACCCCTAAAAAAACATGTAATCTGTAAACGATCGAAAACAAATAAAT]
[+] EMBL AGA284354 [TGCCCGCGCGGCACCACCAAGGTCGACTCCTGGTGGCGCTGGCTGTTCTGGCACTGTAGCTACTGCTTCTGCTACTGCGACGATGCCACTCCGATCGCTACGTCAGCCTGCGCGAATCCGTCTCGGACATGGAGCAGAACCGTGTGGTAACCGGGCTGCGCTTTGTGAAGCGCCGCCAGATGGTGCATCTGATCGTGCAGCAGGGGCTGCTGCTGCCCGGGGGCGAGATCGCCAACAGCACGCTCGAGTGGGTCGTGCCGAAACCGTTCACCCACACGGACAAGGGCGTGCGGGACGGGCACGACTACCACACGCTCT CGTACGATTGGCGCGCGATCGACC ]
[+] EMBL AGA280404 [TGCCCGCGCGGCACCACCAAGGTCGACTCCTGGTGGCGCTGGCTGTTCTGGCACTGTAGCTACTGCTTCTGCTACTGCGACGATGCCACTCCGATCGCTACGTCAGCCTGCGCGAATCCGTCTCGGACATGGAGCAGAACCGTGTGGTAACCGGGCTGCGCTTTGTGAAGCGCCGCCAGATGGTGCATCTGATCGTGCAGCAGGGGCTGCTGCTGCCCGGGGGCGAGATCGCCAACAGCACGCTCGAGTGGGTCGTGCCGAAACCGTTCACCCACACGGACAAGGGCGTGCGGGACGGGCACGACTACCACACGCTCT CGTACGATCGGCGCGCGATCGACCTGGACGACGTGCACGTACCGCCCGGCTACGTGGTGACCGG ]
[+] EMBL AGA283448 [TGCCCGCGCGGCACCACCAAGGTCGACTCCTGGTGGCGCTGGCTGTTCTGGCACTGTAGCTACTGCTTCTGCTACTGCGACGATGCCACTCCGATCGCTACGTCAGCCTGCGCGAATCCGTCTCGGACATGGAGCAGAACCGTGTGGTAACCGGGCTGCGCTTTGTGAAGCGCCGCCAGATGGTGCATCTGATCGTGCAGCAGGGGCTGCTGCTGCCCGGGGGCGAGATCGCCAACAGCACGCTCGAGTGGGTCGTGCCGAAACCGTTCACCCACACGGACAAAGGCGTGCGGGACGGGCACGACTACCACACGCTCTCCGTACGATt ]
[+] EMBL BX613282 [ CCGTCTCGGACATGGAGCAGAACCGTGTGGTAACCGGGCTGCGCTTTGTGAAGCGCCGCCAGATGGTGCATCTGATCGTGCAGCAGGGGCTGCTGCTGCCCGGGGGCGAGATCGCCAACAGCACGCTCGAGTGGGTCGTGCCGAAACCGTTCACCCACACGGACAAGGGCGTGCGGGACGGGCACGACTACCACACGCTCT CGTACGATCGGCGCGCGATCGACCTGGACGACGTGCACGTACCGCCCGGCTACGTGGTGACCGGCGTCCAGTTCCGCGTGCTCGGCGCCCGGCTCAACCTGCTGCTGCGCATGACCGAGATGAACTTTACCGCTGGCAAGTTGGTCGGCCTGGACGCGTCCATCTGGAGCGGCAGCTTAGAGACGGAACGGACCGAAATCCCGCTCAAATACATGGACGTGCCGACGCTCGCACCTGCCAAATCGGTCCCCATGTCCACCCAGAACCAGTACCTGCGCTTCGGGCCGACGGGCGGCCGGGCGGACGCCGCCCAGACGACCATCCCGTTCCTGGACGCGCAGCCGGTCAGCCC GGTGCGGCCGACGCCGCTCGCCGGCGCCGGCCTCATGTACAAGGGCGTCCCGAAGTACGGCGGCTTTGTCGCGCCCAAGATCATGACGTACAACTTCGGTGCGCACATCCAGGACCCGACCGACGATTGGTTTGCGGCGGAGCTGGAAGCACGCAGCAGTGCTGCTGCCGGCGGTGGCAGCGACAGCGGCTAGTCGAAATAAATGCTACGAAGAGATAAAACAAAACAAAACAAAAAAAAACAGAAATGCCAACTGCCGACGCCGCCCCCCAAAC ]
[-] EMBL AGA284743 [ ATCTGATCGTGCAGCAGGGGCTGCTGCTGCCCGGGGGCGAGATCGCCAACAGCACGCTCGAGTGGGTCGTGCCGAAACCGTTCACCCACACGGACAAGGGCGTGCGGGACGGGCACGACTACCACACGCTCT CGTACGATCGGCGCGCGATCGACCTGGACGACGTGCACGTACCGCCCGGCTACGTGGTGACCGGCGTCCAGTTCCGCGTGCTCGGCGCCCGGCTCAACCTGCTGCTGCGCATGACCGAGATGAACTTTACCGCTGGCAAGTTGGTCGGCCTGGACGCGTCCATCTGGAGCGGCAGCTTAGAGACGGAACGGACCGAAATCCCGCTCAAATACATGGACGTGCCGACGCTCGCACCGGCCAAATCGGTCCCCATGTCCACCCAGAACCAGTACCTGCGCTTCGGGC ]
[+] EMBL BM635042 [ cc gGTACGATCGGCGCGCGATCGACCTGGACGACGTGCACGTACCGCCCGGCTACGTGGTGACCGGCGTCCAGTTCCGCGTGCTCGGCGCCCGGCTCAACCTGCTGCTGCGCATGACCGAGATGAACTTTACCGCTGGCAAGTTGGTCGGCCTGGACGCGTCCATCTGGAGCGGCAGCTTAGAGACGGAACGGACCGAAATCCCGCTCAAGTACATGGACGTGCCGACGCTCGCACCGGCCAAATCGGTCCCCATGTCCACCCAGAACCAGTACCTGCGCTTCGGGCCGACGGGAGGCCGGGCGGACGCCGCCCAGACGACCATCCCGTTCCTGGACGCGCAGCCGGT AGCCCCGGGTGCGGCCGACGCCGCTCGCCGGCGCCGGCCTCATGTACAAGGGCGTCCCGAAGTACGGCGGCTTTGTCGCGCCCAAGATCATGACGTACAACTTCGGCGCGCACATCCAGGACCCGACCGACGATTGGTTTGCGGCGGAGCTGGAAGCACGCAGCAGTGCTGCTGCCGGCGGTGGCAGCGACAGCGGCTAGTCGAAATAAATGCTACGAAGAGATAAAATAAAAC ]
[+] EMBL BX615223 [ AATCCCGCTCAAATACATGGACGTGCCGACGCTCGCACCGGCCAAATCGGTCCCCATGTCCACCCAGAACCAGTACCTGCGCTTCGGGCCGACGGGCGGCCGGGCGGACGCCGCCCAGACGACCATCCCGTTCCTGGACGCGCAGCCGGTCAGCCC GGTGCGGCCGACGCCGCTCGCCGGCGCCGGCCTCATGTACAAGGGCGTCCCGAAGTACGGCGGCTTTGTCGCGCCCAAGATCATGACGTACAACTTCGGTGCGCACATCCAGGACCCGACCGACGATTGGTTTGCGGCGGAGCTGGAAGCACGCAGCAGTGCTGCTGCCGGCGGTGGCAGCGACAGCGGCTAGTCGAAATAAATGCTACGAAGAGATAAAACAAAACAAAACAAAAAAAAACAGAAATGCCAACTGCCGACGCCGCCCCCCAAACACAGAGATGCAAAAAAGCACGTCTATGCAGGGGTTTCAGCAATGCCTGAAGGCTCTCCACCACCTCTCCAACGGGGATGGATAGTTCAGCTCGTTCAGCGAGCCAGTTTACCAAAAGAAGCAAAGCAAACTAAGGGAAAAAGTCAAAAGTAACAACAACAAAAACTCCCAATGGTAGTAATGCATCCGAAACCGGATACTTATAGCGAGTGAGAGCGAGCCAGCGCAGATATTCTCTGGTAGATAAG ]
[+] EMBL BX617439 [ CGGTCCCCATGTCCACCCAGAACCAGTACCTGCGCTTCGGGCCGACGGGCGGCCGGGCGGACGCCGCCCAGACGACCATCCCGTTCCTGGACGCGCAGCCGGTCAGCCC GGTGCGGCCGACGCCGCTCGCCGGCGCCGGCCTCATGTACAAGGGCGTCCCGAAGTACGGCGGCTTTGTCGCGCCCAAGATCATGACGTACAACTTCGGTGCGCACATCCAGGACCCGACCGACGATTGGTTTGCGGCGGAGCTGGAAGCACGCAGCAGTGCTGCTGCCGGCGGTGGCAGCGACAGCGGCTAGTCGAAATAAATGCTACGAAGA ]
[-] EMBL AGA282107 [ CCATGTCCACCCAGAACCAGTACCTGCGCTTCGGCCCGACGGGCGGCCGGGCGGACGCCGCCCAGACGACCATCCCGTTCCTGGACGCGCAGCCGGTCAGCCC GGTGCGGCCGACGCCGCTCGCCGGCGCCGGCCTCATGTACAAGGGCGTCCCGAAGTACGGCGGCTTTGTCGCGCCCAAGATCATGACGTACAACTTCGGTGCGCACATCCAGGACCCGACCGACGATTGGTTTGCGGCGGAGCTGGAAGCACGCAGCAGTGCTGCTGCCGGCGGTGGCAGCGACAGC ]
[-] EMBL AGA285657 [ ACCTCTCCAACGGGGATGAATAGTTCAGCTCGTTCAGCGAGCCAGTTTACCAAAAGAAGCAAAGCAAAGTAAGGGAAAAAGTCAAAAGTAACAACAACAAAAACTCCCAATGGTAGTACTGCATCCGAAACCGGATACTTATAGCGCGTGAGAGCGAGCCAGCGCAGATATTCTCTGGTAGATAAGCAAATACCCCTAAAAAAACATGTAATCTGTAAACGATCGAAAACAAATAAAT]
consensusID : consensus_8566#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 515 fasta sequence
[AGCAGATCGGCACGAGGTGTACGTGCCGACGCTCGCACCGGCCAAATCGGTCCCCATGTTTCAACCCAGAACCAGTACCTGCGCTTCGGGCCGACGGGCGGCCGGGCGGACGCCGCCCAGANGACCATCCCGTTCCTNGACGCGCAGCGGTCAGCCCGGTGCGGGCGANGACCGACTCGACGGGCGCCGGGCTCATGTACACAGGGGCGTTCCGAANGTACAGGCGGCTTTGTCGCGCCCAAGATCATGACGGTACAACTTCGGTGCGCACATCCAGGACCCGAGCCGACGATTTGGTTTGCAGGCGGAGCTGGAAGCACGCAGGCAGTGCTGCTGCCGGCGGTGGCAGCGACAGCGGCTAGTCGAAATAAATGCTACGAAGAGATAAAAGCAAGAGACAAAGACAAAGATAAAAACAGAAATGCCAAACTGCGCGACAGCCGGCCCCCAAACGACAGAGATGCCAGAGAAAAGCGAGCGTCTTGTGCAAGGGTTTACAGNAATGCGCTGAAGGC]
[+] EMBL BX469604 [AGCAGATCGGCACGAGGTGTACGTGCCGACGCTCGCACCGGCCAAATCGGTCCCCATGTTTCAACCCAGAACCAGTACCTGCGCTTCGGGCCGACGGGCGGCCGGGCGGACGCCGCCCAGANGACCATCCCGTTCCTNGACGCGCAGCGGTCAGCCCGGTGCGGGCGANGACCGACTCGACGGGCGCCGGGCTCATGTACACAGGGGCGTTCCGAANGTACAGGCGGCTTTGTCGCGCCCAAGATCATGACGGTACAACTTCGGTGCGCACATCCAGGACCCGAGCCGACGATTTGGTTTGCAGGCGGAGCTGGAAGCACGCAGGCAGTGCTGCTGCCGGCGGTGGCAGCGACAGCGGCTAGTCGAAATAAATGCTACGAAGAGATAAAAGCAAGAGACAAAGACAAAGATAAAAACAGAAATGCCAAACTGCGCGACAGCCGGCCCCCAAACGACAGAGATGCCAGAGAAAAGCGAGCGTCTTGTGCAAGGGTTTACAGNAATGCGCTGAAGGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8566#0 TGCCCGCGCGGCACCACCAAGGTCGACTCCTGGTGGCGCTGGCTGTTCTGGCACTGTAGC 60
consensus_8566#1 ------------------------------------------------------------
consensus_8566#0 TACTGCTTCTGCTACTGCGACGATGCCACTCCGATCGCTACGTCAGCCTGCGCGAATCCG 120
consensus_8566#1 ------------------------------------------------------------
consensus_8566#0 TCTCGGACATGGAGCAGAACCGTGTGGTAACCGGGCTGCGCTTTGTGAAGCGCCGCCAGA 180
consensus_8566#1 ------------------------------------------------------------
consensus_8566#0 TGGTGCATCTGATCGTGCAGCAGGGGCTGCTGCTGCCCGGGGGCGAGATCGCCAACAGCA 240
consensus_8566#1 ------------------------------------------------------------
consensus_8566#0 CGCTCGAGTGGGTCGTGCCGAAACCGTTCACCCACACGGACAAGGGCGTGCGGGACGGGC 300
consensus_8566#1 ------------------------------------------------------------
consensus_8566#0 ACGACTACCACACGCTCTCGTACGATCGGCGCGCGATCGACCTGGACGACGTGCACGTAC 360
consensus_8566#1 ------------------------------------------------------------
consensus_8566#0 CGCCCGGCTACGTGGTGACCGGCGTCCAGTTCCGCGTGCTCGGCGCCCGGCTCAACCTGC 420
consensus_8566#1 ------------------------------------------------------------
consensus_8566#0 TGCTGCGCATGACCGAGATGAACTTTACCGCTGGCAAGTTGGTCGGCCTGGACGCGTCCA 480
consensus_8566#1 ------------------------------------------------------------
consensus_8566#0 TCTGGAGCGGCAGCTTAGAGACGGAACGGACCGAAATCCCGCTCAAATACATGGACGTGC 540
consensus_8566#1 -------------------------------AGCAGATCGGCACGAG---GTGTACGTGC 26
* * * ** * * ** ******
consensus_8566#0 CGACGCTCGCACCGGCCAAATCGGTCCCCATGTCC--ACCCAGAACCAGTACCTGCGCTT 598
consensus_8566#1 CGACGCTCGCACCGGCCAAATCGGTCCCCATGTTTCAACCCAGAACCAGTACCTGCGCTT 86
********************************* ***********************
consensus_8566#0 CGGGCCGACGGGCGGCCGGGCGGACGCCGCCCAGACGACCATCCCGTTCCTGGACGCGCA 658
consensus_8566#1 CGGGCCGACGGGCGGCCGGGCGGACGCCGCCCAGANGACCATCCCGTTCCTNGACGCGCA 146
*********************************** *************** ********
consensus_8566#0 GCCGGTCAGCCCGGTGCGGCCGACGCC--GCTCGCCGG-CGCCGGCCTCATGTACA--AG 713
consensus_8566#1 GC-GGTCAGCCCGGTGCGGGCGANGACCGACTCGACGGGCGCCGGGCTCATGTACACAGG 205
** **************** *** * * **** *** ****** ********** *
consensus_8566#0 GGCGTCCCGAAG-TAC-GGCGGCTTTGTCGCGCCCAAGATCATGACG-TACAACTTCGGT 770
consensus_8566#1 GGCGTTCCGAANGTACAGGCGGCTTTGTCGCGCCCAAGATCATGACGGTACAACTTCGGT 265
***** ***** *** ****************************** ************
consensus_8566#0 GCGCACATCCAGGACCCGA-CCGACGATT-GGTTTGC-GGCGGAGCTGGAAGCACGCAG- 826
consensus_8566#1 GCGCACATCCAGGACCCGAGCCGACGATTTGGTTTGCAGGCGGAGCTGGAAGCACGCAGG 325
******************* ********* ******* *********************
consensus_8566#0 CAGTGCTGCTGCCGGCGGTGGCAGCGACAGCGGCTAGTCGAAATAAATGCTACGAAGAGA 886
consensus_8566#1 CAGTGCTGCTGCCGGCGGTGGCAGCGACAGCGGCTAGTCGAAATAAATGCTACGAAGAGA 385
************************************************************
consensus_8566#0 TAAAACAAA---ACAAA-ACAAAAA--AAAACAGAAATGCCAA-CTGC-CGAC-GCCGCC 937
consensus_8566#1 TAAAAGCAAGAGACAAAGACAAAGATAAAAACAGAAATGCCAAACTGCGCGACAGCCGGC 445
***** ** ***** ***** * **************** **** **** **** *
consensus_8566#0 CCCCAAAC-ACAGAGATGC---AAAAAAGCA--CGTCT-ATGCAGGGGTTT-CAGCAATG 989
consensus_8566#1 CCCCAAACGACAGAGATGCCAGAGAAAAGCGAGCGTCTTGTGCAAGGGTTTACAGNAATG 505
******** ********** * ****** ***** **** ****** *** ****
consensus_8566#0 C-CTGAAGGCTCTCCACCACCTCTCCAACGGGGATGGATAGTTCAGCTCGTTCAGCGAGC 1048
consensus_8566#1 CGCTGAAGGC-------------------------------------------------- 515
* ********
consensus_8566#0 CAGTTTACCAAAAGAAGCAAAGCAAACTAAGGGAAAAAGTCAAAAGTAACAACAACAAAA 1108
consensus_8566#1 ------------------------------------------------------------
consensus_8566#0 ACTCCCAATGGTAGTAATGCATCCGAAACCGGATACTTATAGCGAGTGAGAGCGAGCCAG 1168
consensus_8566#1 ------------------------------------------------------------
consensus_8566#0 CGCAGATATTCTCTGGTAGATAAGCAAATACCCCTAAAAAAACATGTAATCTGTAAACGA 1228
consensus_8566#1 ------------------------------------------------------------
consensus_8566#0 TCGAAAACAAATAAAT 1244
consensus_8566#1 ----------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||