cluster # 8589

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Anopheles gambiae
cluster # 8589 cluster # 8589 Sequences # 11 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8589#0 length = 513 sequences # 3

consensus_8589#1 length = 467 sequences # 8

consensusID : consensus_8589#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 513
fasta sequence

                              [CCGCCCACGCGTCCGCGACCAAGTTACTTAAAACTGTACATCAACATGAAGATCGCACTGGTGTTATTTCTTTGCACTATTTTAGTGGGCACGATTGGATATGTAGAAGCTCAAACTGTAGACATAGAACCGGCAATCGTCGAGCTGATATCAGCGCTTCGATACATGTCATCTAGAATGGGCAGTAATCCGATCGTACAAAGTGCTATTGAAGAAATGATAGGCACAATTCAAAAATATTCTGGCGTCAATGGTTTCAGATACTACCCGTATGGCATTAAAGGTTAAACTAGAGATTTAACCTCTTCGATACTTCCGGAGTATGATCGTTCGCCGCCAAACGACGTGAAGTGACAGTCATTTGTTCCATCTTGCAAGGCGGTAAAGGTTTCGCTTGTTGAACTACAAACCATGGATATGCAAACTGCAAGAACCAAAACATAACTAAATCATCGGTCAAAAATGTATTTAATATAATCGAATTAAAACTCCTAATAAAAATTGCTTACTTGT]

[+] EMBL BM627863             [CCGCCCACGCGTCCGCGACCAAGTTACTTAAAACTGTACATCAACATGAAGATCGCACTGGTGTTATTTCTTTGCACTATTTTAGTGGGCACGATTGGATATGTAGAAGCTCAAACTGTAGACATAGAACCGGCAATCGTCGAGCTGATATCAGCGCTTCGATACATGTCATCTAGAATGGGCAGTAATCCGATCGTACAAAGTGCTATTGAAGAAATGATAGGCACAATTCAAAAATATTCTGGCGTCAATGGTTTCAGATACTACCCGTATGGCATTAAAGGTTAAACTAGAGATTTAACCTCTTCGATACTTCCGGAGTATGATCGTTCGCCGCCAAACGACGTGAAGTGACAGTCATTTGTTCCATCTTGCAAGGCGGTAAAGGTTTCGCTTGTTGAACTACAAACCATGGATATGCAAACTGCAAGAACCAAAACATAACTAAATCATCGGTCAAAAATGTATTTAATATAATCGAATTAAAACTCCTAATAAAAATTGCTTACTTGT]
[+] EMBL BM604949             [            CCG GACCAAGTTACTTAAAACTGTACATCAACATGAAGAT  CACTGGTGTTATTTCTTTGCACTATTTTAGTGGGCACGATTGGATATGTAGAAGCTCAAACTGTAGACATAGAACCGGCAATCGTCGAGCTGATATCAGCGCTTCGATACATGTCATCTAGAATGGGCAGTAATCCGATCGTACAAAGTGCTATTGAAGAAATGATAGGCACAATTCAAAAATATTCTGGCGTCAATGGTTTCAGATACTACCCGTATGGCATTAAAGGTTAAACTAGAGATTTAACCTCTTCGATACTTCCGGAGTATGATCGTTCGCCGCCAAACGACGTGAAGTGACAGTCATTTGTTCCATCTTGCAAGGCGGTAAAGGTTTCGCTTGTTGAACTACAAACCATGGATATGCAAACTGCAAGAACCAAAACATAACTAAATCATCGGTCAAAAATGTATTTAATATAATCGAATTAAAACTCCTAATAAAAATTGCTTACTTGT]
[+] EMBL BM648602             [            CCGCGACCAAGTTACTTAAAACTGTACATCAACATGAAGATCGCACTGGTGTTATTTCTTTGCACTATTTTAGTGGGCACGATTGGATATGTAGAAGCTCAAACTGTAGACATAGAACCGGCAATCGTCGAGCTGATATCAGCGCTTCGATACATGTCATCTAGAATGGGCAGTAATCCGATCGTACAAAGTGCTATTGAAGAAATGATAGGCACAATTCAAAAATATTCTGGCGTCAATGGTTTCAGATACTACCCGTATGGCATTAAAGGTTAAACTAGAGATTTAACCTCTTCGATACTTCCGGAGTATGATCGTTCGCCGCCAAACGACGTGAAGTGACAGTCATTTGTTCCATCTTGCAAGGCGGTAAAGGTTTCGCTTGTTGAACTACAAACCATGGATATGCAAACTGCAAGAACCAAAACATAACTAAATCATCGGTCAAAAATGTATTTAATATAATCG                                 ]




>consensus_8589#0
CCGCCCACGCGTCCGCGACCAAGTTACTTAAAACTGTACATCAACATGAAGATCGCACTG
GTGTTATTTCTTTGCACTATTTTAGTGGGCACGATTGGATATGTAGAAGCTCAAACTGTA
GACATAGAACCGGCAATCGTCGAGCTGATATCAGCGCTTCGATACATGTCATCTAGAATG
GGCAGTAATCCGATCGTACAAAGTGCTATTGAAGAAATGATAGGCACAATTCAAAAATAT
TCTGGCGTCAATGGTTTCAGATACTACCCGTATGGCATTAAAGGTTAAACTAGAGATTTA
ACCTCTTCGATACTTCCGGAGTATGATCGTTCGCCGCCAAACGACGTGAAGTGACAGTCA
TTTGTTCCATCTTGCAAGGCGGTAAAGGTTTCGCTTGTTGAACTACAAACCATGGATATG
CAAACTGCAAGAACCAAAACATAACTAAATCATCGGTCAAAAATGTATTTAATATAATCG
AATTAAAACTCCTAATAAAAATTGCTTACTTGT

consensusID : consensus_8589#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 467
fasta sequence

                              [CCGCCCACGCGTCCGGCAGTATCGACCAAGTTACTTAAAACTGTACATCAACATGAAGATCGCACTGGTGTTATTTCTTTGCACTGTTTTAGTGGGCACGATCGGATATGCAGAAGCTCAAACTGTAGACATAGAACCGGCAATCGTCGAGCTGATATCAGCGCTTCGATACATGTCGTCTAGAATGGGCAGTAATCCGATCGTACAAAGTGCTATTGAAGAAATTATAGGCACAATTCAAAAATTTTCTGGCGTTAATGGTTTCAGATACTACCCGTATGGTATTAAAGGTTAAACTATAGATTTAACCTCTTCGATACTTCCGGAGTGTGATCGTTCGCCGCCAAACGAAGTGAATCATATGATGCCAAACTGAAGAACCAAAACAGAACTAAATTATCGATCGAAAATGTATTTCGCATTATCAAATTAAAACTCTTGTTGGCTAATAAAAATTGCTTACTTGT]

[+] EMBL BM596622             [CCGCCCACGCGTCCGGTAGTATCGACCAAGTTACTTAAAACTGTACATCAACATGAAGATCGCACTGGTGTTATTTCTTTGCACTGTTTTAGTGGGCACGATCGGATATGCAGAAGCTCAAACTGTAGACATAGAACCGGCAATCGTCGAGCTGATATCAGCGCTTCGATACATGTCGTCTAGAATGGGCAGTAATCCGATCGTACAAAGTGCTATTGAAGAAATTATAGGCACAATTCAAAAATTTTCTGGCGTTAATGGTTTCAGATACTACCCGTATGGTATTAAAGGTTAAACTATAGATTTAACCTCTTCGATACTTCCGGAGTGTGATCGTTCGCCGCCAAACGAAGTGAATCATATGATGCCAAACTGAAGAACCAAAACAGAACTAAATTATCGATCGAAAATGTATTTCGCATTATCAAATTAAAACTCTTGTTGGCTAATAAAAATTGCTTAC    ]
[+] EMBL BM630802             [            CCGGTAGTATCGACCAAGTTACTTAAAACTGTACATCAAAATGAAGATCGCACTGGTGTTATTTCTTTGCACTGTTTTAGTGGGCACGATCGGATATGCAGAAGCTCAAACTGTAGACATAGAACCGGCAATCGTCGAGCTGATATCAGCGCTTCGATACATGTCGTCTAGAATGGGCAGTAATCCGATCGTACAAAGTGCTATTGAAGAAATAATAGGCACAATTCAAAAATATTCTGGCGTTAATGGTTTCAGATACTACCCGTATGGTATTAAAGGTTAAACTAGAGATTTAACCTCTTCGATACTTCCGGAGTATGATCGCTCGCCGCCAAACGAAGTGAATCATATGATGCCAAACTGAAAAACCAAAACATAACTAAATTATCGATCGAAAATGTATTTAGCATTATCAAATTAAAACTCCTGTTGGCTAATAAAAATTGCTTAC    ]
[+] EMBL BM611224             [               ccgGTATCGACCAAGTTACTTAAAACTGTACATCAACATGAAGATCGCACTGGTGTTATTTCTTTGCACTGTTTTAGTGGGCACGATCGGATATGCAGAAGCTCAAACTGTAGACATAGAACCGGCAATCGTCGAGCTGATATCAGCGCTTCGATACATGTCGTCTAGAATGGGCAGTAATCCGATCGTACAAAGTGCTATTGAAGAAATTATAGGCACAATTCAAAAATTTTCTGGCGTTAATGGTTTCAGATACTACCCGTATGGTATTAAAGGTTAAACTATAGATTTAACCTCTTCGATACTTCCGGAGTGTGATCGTTCGCCGCCAAACGAAGTGAATCATATGATGCCAAACTGAAGAACCAAAACAGAACTAAATTATCGATCGAAAATGTATTTCGCATTATCAAATTAAAACTCTTGTTGGCTAATAAAAATTGCTTACTTGT]
[+] EMBL BM578874             [               ccgGTATCGACCAAGTTACTTAAAACTGTACATCAACATGAAGATCGCACTGGTGTTATTTCTTTGCACTGTTTTAGTGGGCACGATCGGATATGCAGAAGCTCAAACTGTAGACATAGAACCGGCAATCGTCGAGCTGATATCAGCGCTTCGATACATGTCGTCTAGAATGGGCAGTAATCCGATCGTACAAAGTGCTATTGAAGAAATTATAGGCACAATTCAAAAATTTTCTGGCGTTAATGGTTTCAGATACTACCCGTATGGTATTAAAGGTTAAACTATAGATTTAACCTCTTCGATACTTCCGGAGTGTGATCGTTCGCCGCCAAACGAAGTGAATCATATGATGCCAAACTGAAGAACCAAAACAGAACTAAATTATCGATCGAAAATGTATTTCGCATTATCAAATTAAAACTCTTGTTGGCTAATAAAAATTGCTTACTTGT]
[+] EMBL BM654042             [                ccGTATCGACCAAGTTACTTAAAACTGTACATCAACATGAAGATCGCACTGGTGTTATTTCTTTGCACTGTTTTAGTGGGCACGATCGGATATGCAGAAGCTCAAACTGTAGACATAGAACCGGCAATCGTCGAGCTGATATCAGCGCTTCGATACATGTCGTCTAGAATGGGCAGTAATCCGATCGTACAAAGTGCTATTGAAGAAATTATAGGCACAATTCAAAAATTTTCTGGCGTTAATGGTTTCAGATACTACCCGTATGGTATTAAAGGTTAAACTATAGATTTAACCTCTTCGATACTTCCGGAGTGTGATCGTTCGCCGCCAAACGAAGTGAATCATATGATGCCAAACTGAAGAACCAAAACAGAACTAAATTATCGATCGAAAATGTATTTCGCATTATCAAATTAAAACTCTTGT                         ]
[+] EMBL BM586922             [                   ccgCGACCAAGTTACTTAAAACTGTACATCAACATGAAGATCGCACTGGTGTTATTTCTTTGCACTGTTTTAGTGGGCACGATCGGATATGTAGAAGCTCAAACTGTAGACATAGAACCGGCAATCGTCGAGCTGATATCAGCGCTTCGATACATGTCGTCTAGAATGGGCAGTAATCCGATCGTACAAAGTGCTATTGAAGAAATAATAGGCACAATTCAAAAATTTTCTGGCGTTAATGGTTTCAGATACTACCCGTATGGCATTAAAGGTTAAACTAGAGATTTAACCTCTTCGATACTTCCGGAGTATGATCGCTCGCCGCCAAACGAAGTAAATCATATGATGCCAAACTGAAGAACCAAAACATAACTAAATTATCGATCGAAAATGTATTTTGCATTATCAAATTAAAACTCCTGTTGGCTAATAAAAATTGCTTACTTGT]
[+] EMBL BM647138             [                    ccgGACCAAGTTACTTAAAACTGTACATCAACATGAAGATCGCACTGGTGTTATTTCTTTGCACTGTTTTAGTGGGCACGATCGGATATGTAGAAGCTCAAACTGTAGACATAGAACCGGCAATCGTCGAGCTGATATCAGCGCTTCGATACATGTCGTCTAGAATGGGCAGTAATCCGATCGTACAAAGTGCTATTGAAGAAATAATAGGCACAATTCAAAAATTTTCTGGCGTTAATGGTTTCAGATACTACCCGTATGGCATTAAAGGTTAAACTAGAGATTTAACCTCTTCGATACTTCCGGAGTATGATCGCTCGCCGCCAAACGAAGTAAATCATATGATGCCAAACTGAAGAACCAAAACATAACTAAATTATCGATCGAAAATGTATTTTGCATTATCAAATTAAAACTCCTGTTGGCTAATAAAAATTGCTTACTTGT]
[+] EMBL BM649058             [                             GTTACTTAAAACTGTACATCAACATGAAGATCGCGCTGGTGTTATTTCTTTGCACTGTTTTAGTGGGCACGATCGGATATGCAGAAGCTCAAACTGTAGACATAGAACCGGCAATCGTCGAGCTGATATCAGCGCTTCGATACATGTCGTCTAGAATGGGCAGTAATCCGATCGTACAAAGTGCTATTGAAGAAATGATAGGCACAATTCAAAAATATTCTGGCGTTAATGGTTTCAGATACTACCCGTATGGTATTAAAGGTTAAACTAGAGATTTAACCTCTTCGATACTTCCGGGGTGTGATCGTTCGCCGCCAAACGAAGTGAATCATATGATGCCAAACTGAAGAACCAAAACATAACTAAATTATCGATCGAAAATGTATTTAGCATTATCAAATTAAAACTCCTGTTGGCTAATAAAAATTGCTTACTTGT]




>consensus_8589#1
CCGCCCACGCGTCCGGCAGTATCGACCAAGTTACTTAAAACTGTACATCAACATGAAGAT
CGCACTGGTGTTATTTCTTTGCACTGTTTTAGTGGGCACGATCGGATATGCAGAAGCTCA
AACTGTAGACATAGAACCGGCAATCGTCGAGCTGATATCAGCGCTTCGATACATGTCGTC
TAGAATGGGCAGTAATCCGATCGTACAAAGTGCTATTGAAGAAATTATAGGCACAATTCA
AAAATTTTCTGGCGTTAATGGTTTCAGATACTACCCGTATGGTATTAAAGGTTAAACTAT
AGATTTAACCTCTTCGATACTTCCGGAGTGTGATCGTTCGCCGCCAAACGAAGTGAATCA
TATGATGCCAAACTGAAGAACCAAAACAGAACTAAATTATCGATCGAAAATGTATTTCGC
ATTATCAAATTAAAACTCTTGTTGGCTAATAAAAATTGCTTACTTGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8589#0      CCGCCCACGCGTCCG-------CGACCAAGTTACTTAAAACTGTACATCAACATGAAGAT 53
consensus_8589#1      CCGCCCACGCGTCCGGCAGTATCGACCAAGTTACTTAAAACTGTACATCAACATGAAGAT 60
                      ***************       **************************************

consensus_8589#0      CGCACTGGTGTTATTTCTTTGCACTATTTTAGTGGGCACGATTGGATATGTAGAAGCTCA 113
consensus_8589#1      CGCACTGGTGTTATTTCTTTGCACTGTTTTAGTGGGCACGATCGGATATGCAGAAGCTCA 120
                      ************************* **************** ******* *********

consensus_8589#0      AACTGTAGACATAGAACCGGCAATCGTCGAGCTGATATCAGCGCTTCGATACATGTCATC 173
consensus_8589#1      AACTGTAGACATAGAACCGGCAATCGTCGAGCTGATATCAGCGCTTCGATACATGTCGTC 180
                      ********************************************************* **

consensus_8589#0      TAGAATGGGCAGTAATCCGATCGTACAAAGTGCTATTGAAGAAATGATAGGCACAATTCA 233
consensus_8589#1      TAGAATGGGCAGTAATCCGATCGTACAAAGTGCTATTGAAGAAATTATAGGCACAATTCA 240
                      ********************************************* **************

consensus_8589#0      AAAATATTCTGGCGTCAATGGTTTCAGATACTACCCGTATGGCATTAAAGGTTAAACTAG 293
consensus_8589#1      AAAATTTTCTGGCGTTAATGGTTTCAGATACTACCCGTATGGTATTAAAGGTTAAACTAT 300
                      ***** ********* ************************** **************** 

consensus_8589#0      AGATTTAACCTCTTCGATACTTCCGGAGTATGATCGTTCGCCGCCAAACGACGTGAAGTG 353
consensus_8589#1      AGATTTAACCTCTTCGATACTTCCGGAGTGTGATCGTTCGCCGCCAAACGAAGTGAA--- 357
                      ***************************** ********************* *****   

consensus_8589#0      ACAGTCATTTGTTCCATCTTGCAAGGCGGTAAAGGTTTCGCTTGTTGAACTACAAACCAT 413
consensus_8589#1      ----TCATATGATGC--------------------------------------------- 368
                          **** ** * *                                             

consensus_8589#0      GGATATGCAAACTGCAAGAACCAAAACATAACTAAATCATCGGTCAAAAATGTATTTAAT 473
consensus_8589#1      -------CAAACTG-AAGAACCAAAACAGAACTAAATTATCGATCGAAAATGTATTTCGC 420
                             ******* ************* ******** **** ** ***********   

consensus_8589#0      ATAATCGAATTAAAACTC-------CTAATAAAAATTGCTTACTTGT 513
consensus_8589#1      ATTATCAAATTAAAACTCTTGTTGGCTAATAAAAATTGCTTACTTGT 467
                      ** *** ***********       **********************