Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 8671 cluster # 8671       Sequences # 11       consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8671#0 length = 1538 sequences # 6  
 consensus_8671#1 length = 1124 sequences # 4  
consensus_8671#2 length = 602 sequences # 1  
consensusID : consensus_8671#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1538
fasta sequence 
                              [AGGCAGAATCGGCACGATGGAGACATCAACCCGACCAACCTCAACGTCAACTGCTGCTGCGGTCTGTTGCGCACCTCGCCCTTCCACCAGCCAAAATCTACCACCTCCAGCCCTACCGGCCTGCGCCAGCTAGACGATGCACAAGGCGTACATCATCGCCATCACCATCATCACCACCAGCAGCAACAGCAGCATTCCGAGGACACCGATCCGAACGTTCACGTTTCGACCAGCGACGAGGACTACCGGTGCGACAACACACTGTCCGACAGATGGCGGGACAGCGTGACGCGTCGCAACGAGCGGTACCGCACGTTCGGGCTGCTCGAGTCCAGCATACTGAACAGCTTCCAGCTGCAAAACTTTCGCCGCAAGACGCCCAGCGTGTTCGACTCGTCCAGCTCCTCGGGGCAGACGAGCTGCAGCTCGACCGCATCGAGCATGATCGACGACATTTCGGACAAGATCGAGGAGATCGGCAAGCTCGACACGAACATCCACTCGCTCATGTACAA-ATCGGTCGAGCTGC-ATAATGACATACTGTCCTTGG-AAGCGACTACTAACCGCCTCATTGCCGACGCGAAGAAACTCTCAGAC-GATCTGGACGATGTACGATTCCTGGACGAGCTGATCGCCATCCTGAACGGCGACATCGGTCCGGTGACACATCGCGAATGGCCCTACAAAATCGACACCGACGCACCGATCGAAGAAGGCACCCCGGTCACCTAACCTGCCCGGATTCGTTCGCCAATCTCGGCACACGCCTAATGCGTGCGTGCGTTCGTGTGCCGCTTGTGCTGGGGAAGCCTTCGCCATCGTGCCCAGCTGTTTTCAGTACGCGCCGGCCCTG-CCGGTCTTATTATACCCATATTACACTCCGATAGATCCTCGTGACTGCATGTCGGCGGCTTTGTAGTGCCTCGGCGGTGGTTCAAAAGACACGCGAACGAACGCAACGGCACATCCAAAGACCGAACGGAGAACCCCCAAATCGATAGNGTATCTAACGTTGCAACTTCTTGCTAAGTGCGTACCGTGCACTGCTCCATTGTCCATCATAGCCACAGCGAGACACAGCGCTGAGACACACCAAGCAAATGTCCTCGTCCTCGACGATAATTGGCTTACGGGTACGGTGTTGGAATACAGTACCATTCCCTCTTCCTTTGTGACATATCCAATATTCGATTTAACGCTTCCGGGAACAGCACCGATTTTGTTGCTTGTACCGCGCGTTGTGTGTCCCTGTTGCTTCGCCCGTTTCAACGCTGCCGCTGCTTCTTAGCCAGCATAATTATAGGCAGAAAAGGTAAGACCATCAGCCTAAAGGTGTCAGCGCATTGGAAGTGTCCCCTGCGAGGTCAATCACTTNGCGTCATTTGTCGCAGTGGCGGGCGGGTTTTAAACTACGCTAACGAGCATCATTAGGGGAGAGGGAGGGGGGGGGGGAGAGGGTGGTTGTAGATTAGAAAATTATACGTAAGTTAAACTACTCCGAACACTGTGTAGGTTGTA-CAATAAATGATCCAATTGTG]

[+] EMBL BX468119             [AGGCAGAATCGGCACGATGGAGACATCAACCCGACCAACCTCAACGTCAACTGCTGCTGCGGTCTGTTGCGCACCTCGCCCTTCCACCAGCCAAAATCTACCACCTCCAGCCCTACCGGCCTGCGCCAGCTAGACGATGCACAAGGCGTACATCATCGCCATCACCATCATCACCACCAGCAGCAACAGCAGCATTCCGAGGACACCGATCCGAACGTTCACGTTTCGACCAGCGACGAGGACTACCGGTGCGACAACACACTGTCCGACAGATGGCGGGACAGCGTGACGCGTCGCAACGAGCGGTACCGCACGTTCGGGCTGCTCGAGTCCAGCATACTGAACAGCTTCCAGCTGCAAAACTTTCGCCGCAAGACGCCCAGCGTGTTCGACTCGTCCAGCTCCTCGGGGCAGACGAGCTGCAGCTCGACCGCATCGAGCATGATCGACGACATTTCGGACAAGATCGAGGAGATCGGCAAGCTCGACACGAACATCCACTCGCTCATGTACAAGATCGGTCGAGCTGCGATAATGACATACTGTCCTTGGAAAGCGACTACTAACCGCCTCATTGCCGACGCGAAGAAACTCTCAGACGGATCTGGACGATGTACGATTCTGGGACGAGCTGATCGCCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL BX618296             [                                                                                                                                                                             CCACCAGCAGCAACAGCAGCATTCCGAGGACACCGATCCGAACGTTCACGTTTCGACCAGCGACGAGGACTACCGGTGCGACAACACACTGTCCGACAGATGGCGGGACAGCGTGACGCGTCGCAACGAGCGGTACCGCACGTTCGGGCTGCTCGAGTCCAGCATACTGAACAGCTTCCAGCTGCAAAACTTTCGCCGCAAGACGCCCAGCGTGTTCGACTCGTCCAGCTCCTCGGGGCAGACGAGCTGCAGCTCGACCGCATCGAGCATGATCGACGACATTTCGGACAAGATCGAGGAGATCGGCAAGCTCGACACGAACATCCACTCGCTCATGTACAA ATCGGTCGAGCTGC ATAATGACATACTGTCCTTGG AAGCGACTACTAACCGCCTCATTGCCGACGCGAAGAAACTCTCAGAC GATCTGGACGATGTACGATTCCTGGACGAGCTGATCGCCATCCTGAACGGCGACATCGGTCCGGTGACACATCGCGAATGGCCCTACAAAATCGACACCGACGCACCGATCGAAGAAGGCACCCCGGTCACCTAACCTGCCCGGATTCGTTCGCCAATCTCGGCACACGCCTAATGCGTGCGTGCGTTCGTGTGCCGCTTGTGCTGGGGAAGCCTTCGCCATCGTGCCCAGCTGTTTTCAGTACGCGCCGGCCCTG CCGGTCTTATTATACCCATATTACACTCCGATAGATCCTCGTGACTGCATGTCGGCGGCTTTGTAGTGCCTCGGCGGTGGTTCAAAAGACACGCGAACGAACGCAACGGCACATCCAAAGACCGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL BX611723             [                                                                                                                                                                                                                                                                                                                                                                                                GTGTTCGACTCGTCCAGCTCCTCGGGGCAGACGAGCTGCAGCTCGACCGCATCGAGCATGATCGACGACATTTCGGACAAGATCGAGGAGATCGGCAAGCTCGACACGAACATCCACTCGCTCATGTACAA ATCGGTCGAGCTGC ATAATGACATACTGTCCTTGG AAGCGACTACTAACCGCCTCATTGCCGACGCGAAGAAACTCTCAGAC GATCTGGACGATGTACGATTCCTGGACGAGCTGATCGCCATCCTGAACGGCGACATCGGTCCGGTGATACATCGCGAATGGCCCTACAAAATCGACACCGACGCACCGATCGAAGAAGGCACCCCGGTCACCTAACCTGCCCGGATTCGTTCGCCAATCTCGGCACACGCCTAATGCGTGCGTGCGTTCGTGTGCCGCTTGTGCTGGGGAAGCCTTCGCCATCGTGCCCAGCTGTTTTCAGTACGCGCCGGCCCTG CCGGTCTTATTATACCCATATTACACTCCGATAGATCCTCGTGACTGCATGTCGGCGGCTTTGTAGTGCCTCGGCGGTGGTTCAAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[-] EMBL BX627276             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GTGCGTTCGTGTGCCGCTTGTGCTGGGGAAGCTTTCGCCATCGTGCCCAGCTGTTTTCAGTACGCGCCGGCCTTG CNGGTCTTATTATACCCATATTACACTCCGATAGATCCTCGTGANTGCATGTNGGCGGCTTTGTAGTGCCTCGGCGGTGGTTCAAAAGACACGCGAACGAACGCAACGGCACATCCAAAGACCGAACGGAGAACCCCCAAATCGATAGNGTATCTAACGTTGCAACTTCTTGCTAAGTGCGTACCGTGCACTGCTCCATTGTCCATCATAGCCACAGCGAGACACAGCGCTGAGACACACCAAGCAAATGTCCTCGTCCTCGACGATAATTGGCTTACGGGTACGGTGTTGGAATACAGTACCATTCCCTCTTCCTTTGTGACATATCCAATATTCGATTTAACGCTTCCGGGAACAGCACCGATTTTGTTGCTTGTACCGCGCGTTGTGTGTCCCTGTTGCTTCGCCCGTTTCAACGCTGCCGCTGCTTCTTAGCCAGCATAATTATAGGCAGAAAAGGTAAGACCATCAGCCTAAAGGTGTCAGCGCATTGGAAGTGTCCCCTGCGAGGTCAATCACTTNGCGTCATTTGTCGCAGTGGCGGGCGGGTTTTAAACTACGCTAACGAGCATCATTAGGGGAGAGGGAGGGGGGGGGGGAGAGGGTGGTTGTAGATTAGAAAATTATACGTAAGTTAAACTACTCCGAACACTGTGTAGGTTGTA CAATAAA             ]
[-] EMBL BX611722             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                CTG TTTCAGTACGCG CGGGCCTGCCCGGTCTTATTATACCCATATACCACTCCGATAGATCCTCGTGACTGCATGTCGGCGGCTTTGTAGTGCCTCGGCGGTGGTTCAAAAGACACGCGAACGAACGCAACGGCACATCCAAAGACCGAACGGAGAACCCCCAAATCGATAGCGTATCTAACGTTGCAACTTCTTGCTAAGTGCGTACCGTGCACTGCTCCATTGTCCATCATAGCCACAGCGAGACACAGCGCTGAGACACACCAAGCAAATGTCCTCGTCCTCGACGATAATTGGCTTACGGGTACGGTGTTGGAATACAGTACCATTCCCTCTTCCTTTGTGACATATCCAATATTCGATTTAACGCTTCCGGGAACAGCACCGATTTTGTTGCTTGTACCGCGCGTTGTGTGTCCCTGTTGCTTCGCCCGTTTCAACGCTGCCGCTGCTTCTTAGCCAGCATAATTATAGGCAGAAAAGGTAAGACCATCAGCCTAAAGGTGTCAGCGCATTGGAAGTGTCCCCTGCGAGGTCAATCACTTCGCGTCATTTGTCGCAGTGGCGGGCGGGTTTTAAACTACGCTAACGAGCATCATTAGGGGAGAGGGAGGGGGGGGGGGAGAGGGTGGTTGTAGATTAGAAAATTATACGTAAGTTAAACTATTCCGAACACTGTGTAGGTTGTA CAATAAATGATCCAATTGTG]
[-] EMBL CNS09762             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             GGTTTTAAAC ACGCTAACGAGCATCATTAGGGGAGAGG  GGGGGGGGGGGAGAGGGTGGGGGTAGATTAGAAAATTATACGTAAGTTAAACTACTCCGAACACTGTGTAGGTTGTATAAATAAATGATCCAATTG  ]




>consensus_8671#0
AGGCAGAATCGGCACGATGGAGACATCAACCCGACCAACCTCAACGTCAACTGCTGCTGC
GGTCTGTTGCGCACCTCGCCCTTCCACCAGCCAAAATCTACCACCTCCAGCCCTACCGGC
CTGCGCCAGCTAGACGATGCACAAGGCGTACATCATCGCCATCACCATCATCACCACCAG
CAGCAACAGCAGCATTCCGAGGACACCGATCCGAACGTTCACGTTTCGACCAGCGACGAG
GACTACCGGTGCGACAACACACTGTCCGACAGATGGCGGGACAGCGTGACGCGTCGCAAC
GAGCGGTACCGCACGTTCGGGCTGCTCGAGTCCAGCATACTGAACAGCTTCCAGCTGCAA
AACTTTCGCCGCAAGACGCCCAGCGTGTTCGACTCGTCCAGCTCCTCGGGGCAGACGAGC
TGCAGCTCGACCGCATCGAGCATGATCGACGACATTTCGGACAAGATCGAGGAGATCGGC
AAGCTCGACACGAACATCCACTCGCTCATGTACAAATCGGTCGAGCTGCATAATGACATA
CTGTCCTTGGAAGCGACTACTAACCGCCTCATTGCCGACGCGAAGAAACTCTCAGACGAT
CTGGACGATGTACGATTCCTGGACGAGCTGATCGCCATCCTGAACGGCGACATCGGTCCG
GTGACACATCGCGAATGGCCCTACAAAATCGACACCGACGCACCGATCGAAGAAGGCACC
CCGGTCACCTAACCTGCCCGGATTCGTTCGCCAATCTCGGCACACGCCTAATGCGTGCGT
GCGTTCGTGTGCCGCTTGTGCTGGGGAAGCCTTCGCCATCGTGCCCAGCTGTTTTCAGTA
CGCGCCGGCCCTGCCGGTCTTATTATACCCATATTACACTCCGATAGATCCTCGTGACTG
CATGTCGGCGGCTTTGTAGTGCCTCGGCGGTGGTTCAAAAGACACGCGAACGAACGCAAC
GGCACATCCAAAGACCGAACGGAGAACCCCCAAATCGATAGNGTATCTAACGTTGCAACT
TCTTGCTAAGTGCGTACCGTGCACTGCTCCATTGTCCATCATAGCCACAGCGAGACACAG
CGCTGAGACACACCAAGCAAATGTCCTCGTCCTCGACGATAATTGGCTTACGGGTACGGT
GTTGGAATACAGTACCATTCCCTCTTCCTTTGTGACATATCCAATATTCGATTTAACGCT
TCCGGGAACAGCACCGATTTTGTTGCTTGTACCGCGCGTTGTGTGTCCCTGTTGCTTCGC
CCGTTTCAACGCTGCCGCTGCTTCTTAGCCAGCATAATTATAGGCAGAAAAGGTAAGACC
ATCAGCCTAAAGGTGTCAGCGCATTGGAAGTGTCCCCTGCGAGGTCAATCACTTNGCGTC
ATTTGTCGCAGTGGCGGGCGGGTTTTAAACTACGCTAACGAGCATCATTAGGGGAGAGGG
AGGGGGGGGGGGAGAGGGTGGTTGTAGATTAGAAAATTATACGTAAGTTAAACTACTCCG
AACACTGTGTAGGTTGTACAATAAATGATCCAATTGTG

consensusID : consensus_8671#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1124
fasta sequence 
                              [CCGCACCCGTCGAGGCAGGCCGCAGTTACTGAGTGTGCAGTGTTTAGCTTCGCACGCAGCCCCCGAACCAGCGAGAGTGTCGCAGCCGTTGATTGTGCCGTCAGTGCGCGTGTTTATGAGTGGCCTTTCAATTTGTTATCTAATGTGCAGGCGAGTGGTACAGGTTGCAGCGAGACAGATCCAGTAAAGTGTACTGCTGCTGTTTTGTCGCGGAACTGTTCTGTGCCAATCAACTTGTTGTATATTGGTGTGTGTGTTTGTGTGATGTAAAAGTCATGCTTCCGGTCATCGGATTGCTAAACAACTGCTGATTTCACCAACTGATTGCCGCCGTCCGTAAACTTGACCATCGAACAGCTTTAAATGGATACGATGAACCCCGTGGACGAACGGCTACCAAAGCTAGAGTTTACGCTTTCTACGGACGAAGAAAATGC-GCTCACCCTGTACGAGGAGCTCGAGCAGACGGACATCAACCCGACCAACCTCAACGTCAACTGCTGCTGCGGTCTGTTGCGCACCTCGCCCTTCCACCAGCCAAAATCTACCACCTCCAGCCCTACCGGCCGGCGCCAGCTAGACGATGCACAAAGCGTACATCATCGCCATCACCATCATCACCACCAGCAGCAACAGCAGCATTCCGAGGACACCGATCCGAACGTTCACGTTTCGACCAGCGACGAGGACTACCGGTGCGACAACACACTGTCCGACAGATGGCGGGACAGCGTGACGCGTCACAACGAGCGGTACCGCACGTTCGGGCTGTTCGAGTCTAGCATACTGAACAGCTTCCAGCTGCAAAACTTTCGCCGCAAGACGCCCAGCGTGTTCGACTCGTCCAGCTCCTCGGGGCAGACGAGCTGCAGCTCGACCGCATCGAGCATGATCGACGACATTTCGGACAAGATCGAGGAGATCGGCAAGCTCGACACGAACATCCACTCGCTCATGTACAAATCGGTCGAGCTGCATAATGACATACTGTCCTTGGAAGCGACTACTAACCGCCTCATTGCCGACGCGAAGAAACTCTCAGACGATCTGGACGATAATTGGCTTACGGGCACGGTGTTGGAATACAGTACCTTTCCCCTGTTGCTTGGCCCGTTTCAACGCTG]

[+] EMBL BM629244             [CCGCACCCGTCGAGGCAGGCCGCAGTTACTGAGTGTGCAGTGTTTAGCTTCGCACGCAGCCCCCGAACCAGCGAGAGTGTCGCAGCCGTTGATTGTGCCGTCAGTGCGCGTGTTTATGAGTGGCCTTTCAATTTGTTATCTAATGTGCAGGCGAGTGGTACAGGTTGCAGCGAGACAGATCCAGTAAAGTGTACTGCTGCTGTTTTGTCGCGGAACTGTTCTGTGCCAATCAACTTGTTGTATATTGGTGTGTGTGTTTATGTGTTGTAAAAGTCATGCTTCCGGTCATCGGATTGCTAAACAACTGCTGATCTCACCCACTGATTGCCGCCGTCCGTAAACTTGACCATCGAACGGCGTTAAATGGATACGATGAACCCTGTGGACGAACGGCTACCAAAGCTAGAGTTTACGCTTTCTACGGACGAAGAAAATGC GCTCACCCTGTACGAGGAGCTCGAGCAGACGGACATCAACCCGACCAACCTCAACGTCAACTGCTGCTGCGGTCTGTTGCGCACCTCGCCCTTCCACCAGCCAAAATCTACCACCTCCAGCCCTACCGGCCTGCGCCAGCTAGACGATGCACAAGGCGTACATCATCGCCATCACCATCATCACCACCAGCAGCAACAGCAGCATTCCGAGGACACCGATCCGAACGTTCACGTTTCGACCAGCGACGAGGACTA                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CNS09761             [                                                                                                                                          TCTAATGTGCAGGCGAGTGGTACAGGTTGCAGCGAGACAGATCCAGTAAAGTGTACTGCTGCTGTTTTGTCGCGGAACTGTTCTGTGCCAATCAACTTGTTGTATATTGGTGTGTGTGTTTGTGTGATGTAAAAGTCATGCTTCCGGTCATCGGATTGCTAAACAACTGCTGATTTCACCAACTGATTGCCGCCGTCCGTAAACTTGACCATCGAACAGCTTTAAATGGATACGATGAACCCCGTGGACGAACGGCTACCAAAGCTAGAGTTTACGCTTTCTACGGACGAAGAAAATGCTGCTCACCCTGTACGAGGAGCTCGAGCAGACGGACATCAACCCGACCAACCTCAACGTCAACTGCTGCTGCGGTCTGTTGCGCACCTCGCCCTTCCACCAGCCAAAATCTACCACCTCCAGCCCTACCGGCCGGCGCCAGCTAGACGATGCACAAAGCGTACATCATCGCCATCACCATCATCACCACCAGCAGCAACAGCAGCATTCCGAGGACACCGATCCGAACGTTCACGTTTCGACCAGCGACGAGGACTACCGGTGCGACA                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CNS097B7             [                                                                                                                                                       CGAGTGGTACAGGTTGCAGCGAGACAGATCCAGTAAAGTGTACTGCTGCTGTTTTGTCGCGGAACTGTTCTGTGCCAATCAACTTGTTGTATATTGGTGTGTGTGTTTGTGTGATGTAAAAGTCATGCTTCCGGTCATCGGATTGCTAAACAACTGCTGATTTCACCAACTGATTGCCGCCGTCCGTAAACTTGACCATCGAACAGCTTTAAATGGATACGATGAACCCCGTGGACGAACGGCTACCAAAGCTAGAGTTTACGCTTTCTACGGACGAAGAAAATGC GCTCACCCTGTACGAGGAGCTCGAGCAGACGGACATCAACCCGACCAACCTCAACGTCAACTGCTGCTGCGGTCTGTTGCGCACCTCGCCCTTCCACCAGCCAAAATCTACCACCTCCAGCCCTACCGGCCGGCGCCAGCTAGACGATGCACAAAGCGTACATCATCGCCATCACCATCATCACCACCAGCAGCAACAGCAGCATTCCGAGGACACCGATCCGAACGTTCACGTTTCGACCAGCGACGAGGACTACCGGTGCGACAACACACTGTCCGACAGATGGCGGGACAGCGTGACGCGTCACAACGAGCGGTACCGCACGTTCGGGCTGTTCGAGTCTAGCATACTGAACAGCTTCCAGCTGCAAAACTTTCGCCGCAAGACGCCCAGCGTGTTCGACTCGTCCAGCTCCTCGGGGCAGACGAGCTGCAGCTCGACCGCATCGAGCATGATCGACGACATTTCGGACAAGATCGAGGAGATCGGCAAGCTCGACACGAACATCCACTCGCTCATGTACAAATCGGTCGAGCTGCATAATGACATACTGTCCTTGGAAGCGACTACTAACCGCCTCATTGCCGACGCGAAGAAACTCTCAGACGATCTGGACGATAATTGGCTTACGGGCACGGTGTTGGAATACAGTACCTTTCCCCTGTTGCTTGGCCCGTTTCAACGCTG]
[+] EMBL CNS09DIL             [                                                                                                                                                                                                                                                                          GTAAAACTCATGCTTCCGGTCATCGGATTGCTAAACAACTGCTGATTTCACCAACTGATTGCCGCCGTCCGTAAACTTGACCATCGAACAGCTTTAAATGGATACGATGAACCCCGTGGACGAACGGCTACCAAAGCTAGAGTTTACGCTTTCTACGGACGAAGAAAATGC GCTCACCCTGTACGAGGAGCTCGAGCAGACGGACATCAACCCGACCAACCTCAACGTCAACTGCTGCTGCGGTCTGTTGCGCACCTCGCCCTTCCACCAGCCAAAATCTACCACCTCCAGCCCTACCGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]




>consensus_8671#1
CCGCACCCGTCGAGGCAGGCCGCAGTTACTGAGTGTGCAGTGTTTAGCTTCGCACGCAGC
CCCCGAACCAGCGAGAGTGTCGCAGCCGTTGATTGTGCCGTCAGTGCGCGTGTTTATGAG
TGGCCTTTCAATTTGTTATCTAATGTGCAGGCGAGTGGTACAGGTTGCAGCGAGACAGAT
CCAGTAAAGTGTACTGCTGCTGTTTTGTCGCGGAACTGTTCTGTGCCAATCAACTTGTTG
TATATTGGTGTGTGTGTTTGTGTGATGTAAAAGTCATGCTTCCGGTCATCGGATTGCTAA
ACAACTGCTGATTTCACCAACTGATTGCCGCCGTCCGTAAACTTGACCATCGAACAGCTT
TAAATGGATACGATGAACCCCGTGGACGAACGGCTACCAAAGCTAGAGTTTACGCTTTCT
ACGGACGAAGAAAATGCGCTCACCCTGTACGAGGAGCTCGAGCAGACGGACATCAACCCG
ACCAACCTCAACGTCAACTGCTGCTGCGGTCTGTTGCGCACCTCGCCCTTCCACCAGCCA
AAATCTACCACCTCCAGCCCTACCGGCCGGCGCCAGCTAGACGATGCACAAAGCGTACAT
CATCGCCATCACCATCATCACCACCAGCAGCAACAGCAGCATTCCGAGGACACCGATCCG
AACGTTCACGTTTCGACCAGCGACGAGGACTACCGGTGCGACAACACACTGTCCGACAGA
TGGCGGGACAGCGTGACGCGTCACAACGAGCGGTACCGCACGTTCGGGCTGTTCGAGTCT
AGCATACTGAACAGCTTCCAGCTGCAAAACTTTCGCCGCAAGACGCCCAGCGTGTTCGAC
TCGTCCAGCTCCTCGGGGCAGACGAGCTGCAGCTCGACCGCATCGAGCATGATCGACGAC
ATTTCGGACAAGATCGAGGAGATCGGCAAGCTCGACACGAACATCCACTCGCTCATGTAC
AAATCGGTCGAGCTGCATAATGACATACTGTCCTTGGAAGCGACTACTAACCGCCTCATT
GCCGACGCGAAGAAACTCTCAGACGATCTGGACGATAATTGGCTTACGGGCACGGTGTTG
GAATACAGTACCTTTCCCCTGTTGCTTGGCCCGTTTCAACGCTG

consensusID : consensus_8671#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 602
fasta sequence 
                              [TTTAGCCGTGTCGGAGTNCCCCNCAGATCTGATAGCGTATCTTAGCCTGTGCCAAAGCTTGCCTTGTNTGNAGGTGGCTGTACCCTGGGTCANGTGGCTTCNCATTTNTGTTCCAATGANTTGATCCNTCAGGCGNATGTCACCAGTCTGCTTGAGTACAACACNCAGACCAGATATTGTCGCTCGTTTCGCTTCGNTCTGATGATATTGTGGGCTTACGGGGTACCGTGTGGTGTGGGAATNCANGTTACCAATTCCCCTGCGTTTCCTTTGTGTTGACAATATCCCAATGATGTCGGATTTAGACGGCTGTCCCGGGGTNCAGCACCGNATTGTTTGTTTGGNNTGGTACCGCGCGTGTTTGTGTCCCTGTTGCTGTCGGCCNCAGTTTCAAACGCTGCCGCGGGCTTGCATTAGCCAAGCATAATTAGGGGTGGTATAGGGGGTTGTGAGATATTAGGGGAGAGGGAGGGGGGGGGGGAGAGGGTGGTTGTAGATTAGAAAATTATACGTAAGTTAAACTACTCCAGAACACTGTGTAGGTTGTACAATAAATGATCCAATTGTGATAACTAGTAAAAAATACNTNGGGGGATTCTTGG]

[-] EMBL AL694655             [TTTAGCCGTGTCGGAGTNCCCCNCAGATCTGATAGCGTATCTTAGCCTGTGCCAAAGCTTGCCTTGTNTGNAGGTGGCTGTACCCTGGGTCANGTGGCTTCNCATTTNTGTTCCAATGANTTGATCCNTCAGGCGNATGTCACCAGTCTGCTTGAGTACAACACNCAGACCAGATATTGTCGCTCGTTTCGCTTCGNTCTGATGATATTGTGGGCTTACGGGGTACCGTGTGGTGTGGGAATNCANGTTACCAATTCCCCTGCGTTTCCTTTGTGTTGACAATATCCCAATGATGTCGGATTTAGACGGCTGTCCCGGGGTNCAGCACCGNATTGTTTGTTTGGNNTGGTACCGCGCGTGTTTGTGTCCCTGTTGCTGTCGGCCNCAGTTTCAAACGCTGCCGCGGGCTTGCATTAGCCAAGCATAATTAGGGGTGGTATAGGGGGTTGTGAGATATTAGGGGAGAGGGAGGGGGGGGGGGAGAGGGTGGTTGTAGATTAGAAAATTATACGTAAGTTAAACTACTCCAGAACACTGTGTAGGTTGTACAATAAATGATCCAATTGTGATAACTAGTAAAAAATACNTNGGGGGATTCTTGG]




>consensus_8671#2
TTTAGCCGTGTCGGAGTNCCCCNCAGATCTGATAGCGTATCTTAGCCTGTGCCAAAGCTT
GCCTTGTNTGNAGGTGGCTGTACCCTGGGTCANGTGGCTTCNCATTTNTGTTCCAATGAN
TTGATCCNTCAGGCGNATGTCACCAGTCTGCTTGAGTACAACACNCAGACCAGATATTGT
CGCTCGTTTCGCTTCGNTCTGATGATATTGTGGGCTTACGGGGTACCGTGTGGTGTGGGA
ATNCANGTTACCAATTCCCCTGCGTTTCCTTTGTGTTGACAATATCCCAATGATGTCGGA
TTTAGACGGCTGTCCCGGGGTNCAGCACCGNATTGTTTGTTTGGNNTGGTACCGCGCGTG
TTTGTGTCCCTGTTGCTGTCGGCCNCAGTTTCAAACGCTGCCGCGGGCTTGCATTAGCCA
AGCATAATTAGGGGTGGTATAGGGGGTTGTGAGATATTAGGGGAGAGGGAGGGGGGGGGG
GAGAGGGTGGTTGTAGATTAGAAAATTATACGTAAGTTAAACTACTCCAGAACACTGTGT
AGGTTGTACAATAAATGATCCAATTGTGATAACTAGTAAAAAATACNTNGGGGGATTCTT
GG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8671#0      ------------------------------------------------------------
consensus_8671#1      CCGCACCCGTCGAGGCAGGCCGCAGTTACTGAGTGTGCAGTGTTTAGCTTCGCACGCAGC 60
consensus_8671#2      ------------------------------------------------------------
                                                                                  

consensus_8671#0      ------------------------------------------------------------
consensus_8671#1      CCCCGAACCAGCGAGAGTGTCGCAGCCGTTGATTGTGCCGTCAGTGCGCGTGTTTATGAG 120
consensus_8671#2      ------------------------------------------------------------
                                                                                  

consensus_8671#0      ------------------------------------------------------------
consensus_8671#1      TGGCCTTTCAATTTGTTATCTAATGTGCAGGCGAGTGGTACAGGTTGCAGCGAGACAGAT 180
consensus_8671#2      ------------------------------------------------------------
                                                                                  

consensus_8671#0      ------------------------------------------------------------
consensus_8671#1      CCAGTAAAGTGTACTGCTGCTGTTTTGTCGCGGAACTGTTCTGTGCCAATCAACTTGTTG 240
consensus_8671#2      ------------------------------------------------------------
                                                                                  

consensus_8671#0      ------------------------------------------------------------
consensus_8671#1      TATATTGGTGTGTGTGTTTGTGTGATGTAAAAGTCATGCTTCCGGTCATCGGATTGCTAA 300
consensus_8671#2      ------------------------------------------------------------
                                                                                  

consensus_8671#0      ------------------------------------------------------------
consensus_8671#1      ACAACTGCTGATTTCACCAACTGATTGCCGCCGTCCGTAAACTTGACCATCGAACAGCTT 360
consensus_8671#2      ------------------------------------------------------------
                                                                                  

consensus_8671#0      ------------------------------------------------------------
consensus_8671#1      TAAATGGATACGATGAACCCCGTGGACGAACGGCTACCAAAGCTAGAGTTTACGCTTTCT 420
consensus_8671#2      ------------------------------------------------------------
                                                                                  

consensus_8671#0      ----------------------------AGGCAGAATCGGCACGATGGAGACATCAACCC 32
consensus_8671#1      ACGGACGAAGAAAATGCGCTCACCCTGTACGAGGAGCTCGAGC-AGACGGACATCAACCC 479
consensus_8671#2      -----------------TTTAGCCGTGTCGGAGTNCCCCNCAGATCTGATAGCGTATCTT 43
                                                    *                   *    * *  

consensus_8671#0      GACCAACCTCAACGTCAACTGCTGCTGCGGTCTGTTGCGCACCTCGCCCT----TCCACC 88
consensus_8671#1      GACCAACCTCAACGTCAACTGCTGCTGCGGTCTGTTGCGCACCTCGCCCT----TCCACC 535
consensus_8671#2      AGCCTGTGCCAAAGCTTGCCTTGTNTGNAGGTGGCTGTACCCTGGGTCANGTGGCTTCNC 103
                        **     *** *    *      **  *   * **  * *   * *           *

consensus_8671#0      AGCCAAAATCTACCACCTCCAGCCCT--ACCGGCCTGCGCCAGCTAGACGATGCACAAGG 146
consensus_8671#1      AGCCAAAATCTACCACCTCCAGCCCT--ACCGGCCGGCGCCAGCTAGACGATGCACAAAG 593
consensus_8671#2      ATTTNTGTTCCAATGANTTGATCCNTCAGGCGNATGTCACCAGTCTGCTTGAGTACAACA 163
                      *       ** *     *  * ** *    **     * ****   *     * ****  

consensus_8671#0      CGTACATCA----TCGCCATCACCATCATCACCACCAGCAGCAACAGCAGCATTCCGAGG 202
consensus_8671#1      CGTACATCA----TCGCCATCACCATCATCACCACCAGCAGCAACAGCAGCATTCCGAGG 649
consensus_8671#2      CNCAGACCAGATATTGTCGCTCGTTTCGCTTCGNTCTGATGATATTGTGGGCTTACGGGG 223
                      *  * * **    * * *       **    *   * *  *  *  *  *  ** ** **

consensus_8671#0      ACAC---CGATCCGAACGTTCACGTTTCGACCAGCGACGAGGACTACCGGTGCGACAACA 259
consensus_8671#1      ACAC---CGATCCGAACGTTCACGTTTCGACCAGCGACGAGGACTACCGGTGCGACAACA 706
consensus_8671#2      TACCGTGTGGTGTGGGAATNCANGTTACCAATTCC--CCTGCGTTTCCTTTGTGTTGACA 281
                         *    * *  *    * ** *** * *    *  *  *   * **  ** *   ***

consensus_8671#0      CACTGTCCGACAGATGGCGGGACAGCGTGACGCGTCGCAACGAGCGGTACCGCACGTTCG 319
consensus_8671#1      CACTGTCCGACAGATGGCGGGACAGCGTGACGCGTCACAACGAGCGGTACCGCACGTTCG 766
consensus_8671#2      --ATATCCCAATGATGTCGGATTTAGACGGC-TGTCCCGGGGTNCAGCACCGNATTGTTT 338
                         * *** *  **** ***        * *  *** *   *  * * **** *   *  

consensus_8671#0      GGCTGCTCGAGTCCAGCATACTGAACAGCTTCCAGCTGCAA--AACTTTCGCCGCAAGAC 377
consensus_8671#1      GGCTGTTCGAGTCTAGCATACTGAACAGCTTCCAGCTGCAA--AACTTTCGCCGCAAGAC 824
consensus_8671#2      GTTTGGNNTGGTACCGCGCG-TGTTTGTGTCCCTGTTGCTGTCGGCCNCAGTTTCAAACG 397
                      *  **     **   **    **      * ** * ***      *    *   ***   

consensus_8671#0      GCCCAGCGTGTTCG-ACTCGTCCAGCTCCTCGGGGCAGACGAGCTGCAGCTCGACCGCAT 436
consensus_8671#1      GCCCAGCGTGTTCG-ACTCGTCCAGCTCCTCGGGGCAGACGAGCTGCAGCTCGACCGCAT 883
consensus_8671#2      CTGCCGCGGGCTTGCATTAGCCAAGCATAATTAGGGGTGGTATAGGGGGTTGTGAGATAT 457
                         * *** * * * * * * * ***       **      *   *  * *       **

consensus_8671#0      CGAGCATGATCGACGACATTTCGGACAAGATCGAGG-AGATCGGCAAGCTCGACACGAAC 495
consensus_8671#1      CGAGCATGATCGACGACATTTCGGACAAGATCGAGG-AGATCGGCAAGCTCGACACGAAC 942
consensus_8671#2      TAGGGGAGAGGGAGGGGGGGGGGGAGAGGGTGGTTGTAGATTAGAAAATT--ATACGTAA 515
                         *   **  ** *       *** * * * *  * ****  * **  *  * *** * 

consensus_8671#0      ATCCACTCGCTCATGTACAAATCGGTCGAGCTGCATAATGACATACTGTCCTTGGAAGCG 555
consensus_8671#1      ATCCACTCGCTCATGTACAAATCGGTCGAGCTGCATAATGACATACTGTCCTTGGAAGCG 1002
consensus_8671#2      GTTAAACTACTCCAGAAC--ACTGTGTAGGTTGTACAATAA-ATGATCCAATTGTGA-TA 571
                       *  *    ***  * **  *  *     * ** * *** * **  *    ***  *   

consensus_8671#0      ACTACTAACCGCCTCATTGCCGACGCGAAGAAACTCTCAGACGATCTGGACGATGTACGA 615
consensus_8671#1      ACTACTAACCGCCTCATTGCCGACGCGAAGAAACTCTCAGACGATCTGGACGATAATTGG 1062
consensus_8671#2      ACTAGTAAAAAATACNTNG---------GGGGATTCTTGG-------------------- 602
                      **** ***      * * *          *  * ***  *                    

consensus_8671#0      TTCCTGGACGAGCTGATCGCCATCCTGAACGGCGACATCGGTCCGGTGACACATCGCGAA 675
consensus_8671#1      CTTACGGGCACGGTG---------TTGGAATACAGTACCTTTCCCCTGTTGCTTGGCCCG 1113
consensus_8671#2      ------------------------------------------------------------
                                                                                  

consensus_8671#0      TGGCCCTACAAAATCGACACCGACGCACCGATCGAAGAAGGCACCCCGGTCACCTAACCT 735
consensus_8671#1      TTTCAACGCTG------------------------------------------------- 1124
consensus_8671#2      ------------------------------------------------------------
                                                                                  

consensus_8671#0      GCCCGGATTCGTTCGCCAATCTCGGCACACGCCTAATGCGTGCGTGCGTTCGTGTGCCGC 795
consensus_8671#1      ------------------------------------------------------------
consensus_8671#2      ------------------------------------------------------------
                                                                                  

consensus_8671#0      TTGTGCTGGGGAAGCCTTCGCCATCGTGCCCAGCTGTTTTCAGTACGCGCCGGCCCTGCC 855
consensus_8671#1      ------------------------------------------------------------
consensus_8671#2      ------------------------------------------------------------
                                                                                  

consensus_8671#0      GGTCTTATTATACCCATATTACACTCCGATAGATCCTCGTGACTGCATGTCGGCGGCTTT 915
consensus_8671#1      ------------------------------------------------------------
consensus_8671#2      ------------------------------------------------------------
                                                                                  

consensus_8671#0      GTAGTGCCTCGGCGGTGGTTCAAAAGACACGCGAACGAACGCAACGGCACATCCAAAGAC 975
consensus_8671#1      ------------------------------------------------------------
consensus_8671#2      ------------------------------------------------------------
                                                                                  

consensus_8671#0      CGAACGGAGAACCCCCAAATCGATAGNGTATCTAACGTTGCAACTTCTTGCTAAGTGCGT 1035
consensus_8671#1      ------------------------------------------------------------
consensus_8671#2      ------------------------------------------------------------
                                                                                  

consensus_8671#0      ACCGTGCACTGCTCCATTGTCCATCATAGCCACAGCGAGACACAGCGCTGAGACACACCA 1095
consensus_8671#1      ------------------------------------------------------------
consensus_8671#2      ------------------------------------------------------------
                                                                                  

consensus_8671#0      AGCAAATGTCCTCGTCCTCGACGATAATTGGCTTACGGGTACGGTGTTGGAATACAGTAC 1155
consensus_8671#1      ------------------------------------------------------------
consensus_8671#2      ------------------------------------------------------------
                                                                                  

consensus_8671#0      CATTCCCTCTTCCTTTGTGACATATCCAATATTCGATTTAACGCTTCCGGGAACAGCACC 1215
consensus_8671#1      ------------------------------------------------------------
consensus_8671#2      ------------------------------------------------------------
                                                                                  

consensus_8671#0      GATTTTGTTGCTTGTACCGCGCGTTGTGTGTCCCTGTTGCTTCGCCCGTTTCAACGCTGC 1275
consensus_8671#1      ------------------------------------------------------------
consensus_8671#2      ------------------------------------------------------------
                                                                                  

consensus_8671#0      CGCTGCTTCTTAGCCAGCATAATTATAGGCAGAAAAGGTAAGACCATCAGCCTAAAGGTG 1335
consensus_8671#1      ------------------------------------------------------------
consensus_8671#2      ------------------------------------------------------------
                                                                                  

consensus_8671#0      TCAGCGCATTGGAAGTGTCCCCTGCGAGGTCAATCACTTNGCGTCATTTGTCGCAGTGGC 1395
consensus_8671#1      ------------------------------------------------------------
consensus_8671#2      ------------------------------------------------------------
                                                                                  

consensus_8671#0      GGGCGGGTTTTAAACTACGCTAACGAGCATCATTAGGGGAGAGGGAGGGGGGGGGGGAGA 1455
consensus_8671#1      ------------------------------------------------------------
consensus_8671#2      ------------------------------------------------------------
                                                                                  

consensus_8671#0      GGGTGGTTGTAGATTAGAAAATTATACGTAAGTTAAACTACTCCGAACACTGTGTAGGTT 1515
consensus_8671#1      ------------------------------------------------------------
consensus_8671#2      ------------------------------------------------------------
                                                                                  

consensus_8671#0      GTACAATAAATGATCCAATTGTG 1538
consensus_8671#1      -----------------------
consensus_8671#2      -----------------------


Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)