Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 8745 cluster # 8745       Sequences # 12       consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8745#0 length = 2035 sequences # 10  
 consensus_8745#1 length = 757 sequences # 1  
consensus_8745#2 length = 379 sequences # 1  
consensusID : consensus_8745#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 2035
fasta sequence 
                              [CCGGGCCGTCGGAATTTAGCGCATTTTTTCTTGTTTTCATCACCGTTCCTTCCGAGCGAGCGTCTCGGTTGCGTGAAAAACGAACCATTTCCCATTGGCAGGCTTGAGTGGCAAGCCGTCGAACGGTAGAATCGCAGCCCCAGGATGCCCAGAGGTATCATCACGCTCCAG-CTGGGCCAGTGCGGCAACCAGATTGGGTTCGAATTTTGGAAACGCCTTTGTCTCGAGCATGGAATCTCACCGTCGGGAATGTTGCGCGAGTTTGCCAGCGATGGCATCGACCGGAAGGATGTGTTTTTCTACCAGGCGGACGATGACCACTACATTCCCCGGGCGGTTCTGCTGGATTTGGAACCGCGCGTAATTCATTCGATCATGGCTTCACCGTACGCCAAGCTGTACAATCCGGAAAACATTTACCTATCCAAAGACGGAGGCGGTGCGGGTAATAACTGGGCTTCCGGGTTTAGTCAGGGCGAAAAGCTGCACGAGGAAGTGTTTGACATCATCGACCGGGAAGCGGATGGAAGCGACAGTCTGGAGGGATTCGTCCTGTGTCACTCGATCGCGGGCGGTACCGGATCCGGCATGGGCTCGTACATCATGGAGCGGCTGTCGGATCACTTCCCCAAGAAGCTCATCCAGACGTACAGCGTGTTTCCGAATCAGGACGAAATCAGCGACGTTGTGGTGCAGCCGTACAACAGTCTACTGACCCTTCGCCGGCTGACCAGCTGTGCGGACTGCGTGGTCGTGCTGGACAATACTGCACTGAACCGTATCGCGACGGATTGGCTTCATCTGGATAACCCCAGCTTCGCTCAGATCAACACGCTCGTCTCCACCATCATGTCCGTCAGCACGACCACCCTACGCTACCCATCGTACATGAACAACAATCTGATCGAGCTGATTGCCCCACTGATTCCGACTTCGCAGCTTCACTTCCTCATGACCGGCTACACACCGCTCGCGACCGAATCGGACACACAGTCGGTGCAGAAAACGACCGTGCTGGACGTGATGCGGCGCTTGCTGCAGCCGAAGAACATGATGGTATCGACCGGGCCGGACAAAACCAACCACCATCGGTAC-ATCTCGATACTGAACATCATCCAGGGTGAGGTGAACCCGTCCCAGGTGCACCAATCGATTCAGCGAATCCGGGAACGGAAGCTGGCCCAGTTCATACCATGGGGTCCGGCCAGCATTCAGGTGGCCCTGTCACGCAGCAGCCCGTACGTGCAGAGCAGTCACCGGGTGACGGGGCTAATGTTGGCCAATCACACCAGCATCTGCTCGCTGTTCGAGCGGGCCCTCGGCCAGTACGACAAGCTGCGCAAGCGAGGCGCCTTCCTGGACCAGTTCAAGCGAGAGGGAC-AATTCAAAGACGATCTGAGCGAGATGGACGAAGCGCGCGATGTGGTGGATGCGCTCGTGCAGGAGTACGAGGTAGCCACCAAGGAGAACTATCTGAGCTGGCATGCGAACCGTGCAAATGGTGGTGCCGGCACGAATCCGTAAGATCACTGGCATTGC--T-CTGCATTGCTTACAAGGAAGGTTTTTAATTATATCGTTACTAGAGGATGGCGTTTGGCGCGGAGAAGGGTATTAATAGAATCGCATAGCTAACGTTAGATAGGCGGAAATGGAGGAAACCAGGCTCTCTAGAGAGGAAATGAAGAATCTACATATTTGAGAATCGAGAACACCAGAGTGTGAGCGTGAGTTGAGGCGAACCGAGGTAACCATGGTATANACGTATTTGTGCCANATAATCCACCATCATTGGTAACACACTAAAANNCAACACCACAAACACAAACCAGGCCATTTTTGCCAGNCCGCACAAAAGCTTTTATTTTCCCCTTTTAATAAAGGGGCTTAATTTNAGCCATTTTGGGCACCTTNGACCCGCGTCNGTTTTTCACCAACCGTNCACTTNACCATTGNGAAAAAAACCCCTTGTGCGGTTTAACCCAACATTTAAAATCGNCTTGACANACAAANTTACCCCCTTTTACACAACTTGCGT]

[+] EMBL BM643347             [CCGGGCCGTCGGAATTTAGCGCATTTTTTCTTGTTTTCATCACCGTTCCTTCCGAGCGAGCGTCTCGGTTGCGTGAAAAACGAACCATTTCCCATTGGCAGGCTTGAGTGGCAAGCCGTCGAACGGTAGAATCGCAGCCCCAGGATGCCCAGAGGTATCATCACGCTCCAG CTGGGCCAGTGCGGCAACCAGATTGGGTTCGAATTTTGGAAACGCCTTTGTCTCGAGCATGGAATCTCACCGTCGGGAATGTTGCGCGAGTTTGCCAGCGATGGCATCGACCGGAAGGATGTGTTTTTCTACCAGGCGGACGATGACCACTACATTCCCCGGGCGGTTCTGCTGGATTTGGAACCGCGCGTAATTCATTCGATCATGGCTTCACCGTACGCAAAGCTGTACAATCCGGAAAATATTTACCTGTCCAAAGACGGAGGCGGCGCGGGTAATAACTGGGCTTCCGGGTTTAGTCAGGGCGAAAAGCTGCACGAGGAAGTGTTTGACATCATCGACCGGGAAGCGGATGGAAGCGACAGTCTGGAGGGATTCGTCCTGTGTCACTCGATCGCGGGCGGTACCGGATCCGGCATGGGCTCGTACATCATGGAGCGGCTGTCGGATCACTTCCCCAAGAAGCTCATCCAGACGTACAGTGTGTTTCCGAATCAGGACGAAATCAGCGACGTTGTGGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CNS08J31             [       GTCGGAATTTAGCGCATTTTTTCTTGTTTTCATCACCGTTCCTTCCGAGCGAGCGTCTCGGTTGCGTGAAAAACGAACCATTTCCCATTGGCAGGCTTGAGTGGCAAGCCGTCGAACGGTAGAATCGCAGCCCCAGGATGCCCAGAGGTATCATCACGCTCCAG CTGGGCCAGTGCGGCAACCAGATTGGGTTCGAATTTTGGAAACGCCTTTGTCTCGAGCATGGAATCTCACCGTCGGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CNS08GUR             [                            TCTTGTTTTCATCACCGTTCCTTCCGAGCGAGCGTCTCGGTTGCGTGAAAAACGAACCATTTCCCATTGGCAGGCTTGAGTGGCAAGCCGTCGAACGGTAGAATCGCAGCCCCAGGATGCCCAGAGGTATCATCACGCTCCAG CTGGGCCAGTGCGGCAACCAGATTGGGTTCGAATTTTGGAAACGCCTTTGTCTCGAGCATGGAATCTCACCGTCGGGAATGTTGCGCGAGTTTGCCAGCGATGGCATCGACCGGAAGGATGTGTTTTTCTACCAGGCGGACGATGACCACTACATTCCCCGGGCGGTTCTGCTGGATTTGGAACCGCGCGTAATTCATTCGATCATGGCTTCACCGTACGCCAAGCTGTACAATCCGGAAAATATTTACCTGTCCAAAGACGGAGGCGGCGCGGGTAATAACTGGGCTTCCGGGTTTAGTCAGGGCGAAAAGCTGCACGAGGAAGTGTTTGACATCATCGACCGGGAAGCGGATGGAAGCGACAGTCTGGAGGGATTCGTCCTGTGTCACTCGATCGCGGGCGGTACCGGATCCGGCATGGGCTCGTACATCATGGAGCGGCTGTCGGATCACTTCCCCAAGAAGCTCATCCAGACGTACAGCGTGTTTCCGAATCAGGACGAAATCAGCGACGTTGTGGTGCAGCCGTACAACAGTCTACTGACCCTTCGCCGGCTGACCAGCTGTGCGGACTGCGTGGTCGTGCTGGACAATACTGCACTGAACCGTATCGCGACGGATTGGCTTCATCTGGATAACCCCAGCTTCGCTCAGATCAACACGCTCGTCTCCACCATCATGTCCGTCAGCACGACCACCCTACGCTACCCATCGTACA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL BM610527             [                             ccgGTTTTCATCACCGTTCCTCCCGAGCGAGCGTCTCGGTTGCGTGAAAAACGAACCATTTCCCATTGGCAGGCTTGAGTGGCAAGCCGTCGAACGGTAGAATCGCAGCCCCAGGATGCCCAGAGGTATCATCACGCTCCAG CTGGGCCAGTGCGGCAACCAGATTGGGTTCGAATTTTGGAAACGCCTTTGTCTCGAGCATGGAATCTCACCGTCGGGAATGTTGCGCGAGTTTGCCAGCGATGGCATCGACCGGAAGGATGTGTTTTTCTACCAGGCGGACGATGACCACTACATTCCCCGGGCGGTTCTGCTGGATTTGGAACCGCGCGTAATTCATTCGATCATGGCTTCACCGTACGCCAAGCTGTACAATCCGGAAAACATTTACCTATCCAAAGACGGAGGCGGTGCGGGTAATAACTGGGCTTCCGGGTTTAGTCAGGGCGAAAAGCTGCACGAGGAAGTGTTTGACATCATCGACCGGGAAGCGGATGGAAGCGACAGTCTGGAGGGATTCGTCCTGTGTCACTCGATCGCGGGTGGTACCGGCTCTGGCATGGGATCGTACATCATGGAGCGGCTGTCGGATCACTTCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL BX620909             [                                                           GCGTCTCGGTTGCGTGAAANACGAACCATTTCCCATTGGCAGGCTTGAGTGGCAAGCCGTCGAACGGTAGAATCGCAGCCCCAGGATGCCCAGAGGTATCATCACGCTCCAG CTGGGCCAGTGCGGCAACCAGATTGGGTTCGAATTTTGGAAACGCCTTTGTCTCGAGCATGGAATCTCACCGTCGGGAATGTTGCGCGAGTTTGCCAGCGATGGCATCGACCGGAAGGATGTGTTTTTCTACCAGGCGGACGATGACCACTACATTCCCCGGGCGGTTCTGCTGGATTTGGAACCGCGCGTAATTCATTCGATCATGGCTTCACCGTACGCCAAGCTGTACAATCCGGAAAACATTTACCTATCCAAAGACGGAGGCGGTGCGGGTAATAACTGGGCTTCCGGGTTTAGTCAGGGCGAAAAGCTGCACGAGGAAGTGTTTGACATCATCGACCGGGAAGCGGATGGAAGCGACAGTCTGGAGGGATT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL BX620985             [                                                                                  AACCATTTCCCATTGGCAGGCTTGAGTGGCNAGCCGNCGAACGGTAGAATCGCACCCCCANGATGCCCAGAGGTATCATCACGCTCCAGTCTGGGNCAGTGCGGCAACCANATTGGGTTCGAATTTTGGAAACNCCTTTGTCTCGAGCATGGAATCTCACCGTCGGGAATGTTGCGCGAGTTTGCCANCGATGGCATCNACCGGAAGGATGTGTTTTTCTACCAGGCGGACNATGACCACTACNTTCCCCGGGCGGNTCTGCTGGATTTGGAACCGCGCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL BM645633             [                                                                                                                                                                                                                                                                                                                                                                                                                 ccgATCCGGAAAACATTTACCTATCCAAAGACGGAGGCGGTGCGGGTAATAACTGGGCTTCCGGGTTTAGTCAGGGCGAAAAGCTGCACGAGGAAGTGTTTGACATCATCGACCGGGAAGCGGATGGAAGCGACAGTCTGGAGGGATTCGTCCTGTGTCACTCGATCGCGGGTGGTACCGGCTCTGGCATGGGATCGTACATCATGGAGCGGCTGTCGGATCACTTCCCCAAGAAGCTCATCCAGACGTACAGCGTGTTTCCGAATCAGGACGAAATCAGCGACGTTGTGGTGCAGCCGTACAACAGTCTACTGACCCTTCGCCGGCTGACCAGCAGTGCGGACTGCGTGGTCGTGCTGGACAATACTGCACTGAACCGTATCGCGACGGATTGGCTTCATCTGGATAACCCCAGCTTCGCTCAGATCAACACGCTCGTCTCCACCATCATGTCCGTCAGCACGACCACCCTACGCTACCCATCGTACATGAACAACAATCTGATCGAGCTGATTGCCCCACTGATTCCGACTTCGCAGCTTCACTTCCTCATGACCGGCTACACACCGCTCGCGACCGAATCGGACACACAGTCGGTGCAGAAAACGACCGTGCTGGACGTGATGCGGCGCTTGCTGCAGCCGAAGAACATGATGGTATCGACCGGGCCGGACAAAAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL BX617678             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TGTGGTGCAGCCGTACAACAGTCTACTGACCCTTCGCCGGCTGACCAGCTGTGCGGACTGCGTGGTCGTGCTGGACAATACTGCACTGAACCGTATCGCGACGGATTGGCTTCATCTGGATAACCCCAGCTTCGCTCAGATCAACACGCTCGTTTCCACAATCATGTCCGTCAGCACGACCACCCTTCGCTACCCATCGTACATGAACAACAATCTGATCGAGCTGATTGCCCCACTGATTCCGACTTCGCAGCTTCACTTCCTCATGACCGGCTACACACCGCTCGCGACCGAGTCGGACACACAGTCGGTGCAGAAAACGACCGTGCTGGACGTGATGCGGCGCTTGCTGCAGCCGAAGAACATGATGGTATCTACCGGGCCGGACAAAACCAACCACCATCGGTAC ATCTCGATACTGAACATCATCCAGGGTGAGGTGAACCCGTCCCAGGTGCACCAATCGATTCAGCGAATCCGGGAACGGAAGCTGGCCCAGTTCATACCATGGGGTCCGGCCAGCATTCAGGTGGCCCTGTCACGCAGCAGCCCGTACGTGCAGAGCAGTCACCGGGTGACGGGGCTAATGTTGGCCAATCACACCAGCATCTGCTCGCTGTTCGAGCGGGCCCTCGGCCAGTACGACAAGCTGCGCAAGCGAGGCGCCTTCCTGGACCAGTTCAAGCGAGAGGGAC AATTCAAAGACGATCTGAGCGAGATGGACGAAGCGCGCGATGTGGTGGATGCGCTCGTGCAGGAGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL BX467756             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         aggcagaATCGGCACGATGGCGATACTGAACATCATCCAGGCTGAGGTGAACCCGTCCCAGGTGCACCAATCGATTCAGCGAATCCGGGAACGGAAGCTGGCCCAGTTCATACCATGGGGTCCGGCCAGCATTCAGGTGGCCCTGTCACGCAGCAGCCCGTACGTGCAGAGCAGTCACCGGGTGACGGGGCTAATGTTGGCCAATCACACCAGCATCTGCTCGCTGTTCGAGCGGGCCCTCGGCCAGTACGACAAGCTGCGCAAGCGAGGCGCCTTCCTGGACCAGTTCAAGCGAGA GGACAAATTCAAGGACGATCTGAGCGAGATGGACGAAGCGCGCGATGTGGTGGATGCGCTCGTGCAGGAGTACGAGGTAGCCACCAAGGAGAACTATCTGAGCTGGCATGCGAACCGTGCAAATGGTGGTGCCGGCACGAATCCGTAAGATCACTGGCATTGC  T CTGCATTGCTTACAAGGAAGGTTTTTAATTATATCGTTACTAGAGGATGGCGTTTGGCGCGGAGAAGGGTATTAATAGAATCGCATAGCTAACGTTAGATAGGCGGAAATGGAGGAAACCAGGCTCTCTAGAGAGGAAATGAAGAATCTACATATTTGAGAATCGAGAACACCAGAGTGTGAGCGTGAGTTGAGGCGAACCGAGGTAACCATGGTATANACGTATTTGTGCCANATAATCCACCATCATTGGTAACACACTAAAANNCAACACCACAAACACAAACCAGGCCATTTTTGCCAGNCCGCACAAAAGCTTTTATTTTCCCCTTTTAATAAAGGGGCTTAATTTNAGCCATTTTGGGCACCTTNGACCCGCGTCNGTTTTTCACCAACCGTNCACTTNACCATTGNGAAAAAAACCCCTTGTGCGGTTTAACCCAACATTTAAAATCGNCTTGACANACAAANTTACCCCCTTTTACACAACTTGCGT]
[-] EMBL CNS0937X             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 AGCCACCAAGGAGAACTTTTTGGGCTGGCATGCGAACCGTGCAAATGGCGGTGCCGGCACGAATCCGTAAGATAACTGGCATGGCATTGCTGCATTGCTTACAAGGAAGGTTTTTAATTATATCGTTACTAGAGGATGGCGTTTGGCGCGGAGAAGGGTATTAATAAAATCGCATAGCTAACGTTAGATAGGCGGAAATGGAGGAAACCAGGCTCTCTAGAGAGGAAATGAAGAATCTACATATTTGAGAATCGAG ACA CAGAGTGTGGGCGTG GGTG GGCGAACg                                                                                                                                                                                                                                                                                                      ]




>consensus_8745#0
CCGGGCCGTCGGAATTTAGCGCATTTTTTCTTGTTTTCATCACCGTTCCTTCCGAGCGAG
CGTCTCGGTTGCGTGAAAAACGAACCATTTCCCATTGGCAGGCTTGAGTGGCAAGCCGTC
GAACGGTAGAATCGCAGCCCCAGGATGCCCAGAGGTATCATCACGCTCCAGCTGGGCCAG
TGCGGCAACCAGATTGGGTTCGAATTTTGGAAACGCCTTTGTCTCGAGCATGGAATCTCA
CCGTCGGGAATGTTGCGCGAGTTTGCCAGCGATGGCATCGACCGGAAGGATGTGTTTTTC
TACCAGGCGGACGATGACCACTACATTCCCCGGGCGGTTCTGCTGGATTTGGAACCGCGC
GTAATTCATTCGATCATGGCTTCACCGTACGCCAAGCTGTACAATCCGGAAAACATTTAC
CTATCCAAAGACGGAGGCGGTGCGGGTAATAACTGGGCTTCCGGGTTTAGTCAGGGCGAA
AAGCTGCACGAGGAAGTGTTTGACATCATCGACCGGGAAGCGGATGGAAGCGACAGTCTG
GAGGGATTCGTCCTGTGTCACTCGATCGCGGGCGGTACCGGATCCGGCATGGGCTCGTAC
ATCATGGAGCGGCTGTCGGATCACTTCCCCAAGAAGCTCATCCAGACGTACAGCGTGTTT
CCGAATCAGGACGAAATCAGCGACGTTGTGGTGCAGCCGTACAACAGTCTACTGACCCTT
CGCCGGCTGACCAGCTGTGCGGACTGCGTGGTCGTGCTGGACAATACTGCACTGAACCGT
ATCGCGACGGATTGGCTTCATCTGGATAACCCCAGCTTCGCTCAGATCAACACGCTCGTC
TCCACCATCATGTCCGTCAGCACGACCACCCTACGCTACCCATCGTACATGAACAACAAT
CTGATCGAGCTGATTGCCCCACTGATTCCGACTTCGCAGCTTCACTTCCTCATGACCGGC
TACACACCGCTCGCGACCGAATCGGACACACAGTCGGTGCAGAAAACGACCGTGCTGGAC
GTGATGCGGCGCTTGCTGCAGCCGAAGAACATGATGGTATCGACCGGGCCGGACAAAACC
AACCACCATCGGTACATCTCGATACTGAACATCATCCAGGGTGAGGTGAACCCGTCCCAG
GTGCACCAATCGATTCAGCGAATCCGGGAACGGAAGCTGGCCCAGTTCATACCATGGGGT
CCGGCCAGCATTCAGGTGGCCCTGTCACGCAGCAGCCCGTACGTGCAGAGCAGTCACCGG
GTGACGGGGCTAATGTTGGCCAATCACACCAGCATCTGCTCGCTGTTCGAGCGGGCCCTC
GGCCAGTACGACAAGCTGCGCAAGCGAGGCGCCTTCCTGGACCAGTTCAAGCGAGAGGGA
CAATTCAAAGACGATCTGAGCGAGATGGACGAAGCGCGCGATGTGGTGGATGCGCTCGTG
CAGGAGTACGAGGTAGCCACCAAGGAGAACTATCTGAGCTGGCATGCGAACCGTGCAAAT
GGTGGTGCCGGCACGAATCCGTAAGATCACTGGCATTGCTCTGCATTGCTTACAAGGAAG
GTTTTTAATTATATCGTTACTAGAGGATGGCGTTTGGCGCGGAGAAGGGTATTAATAGAA
TCGCATAGCTAACGTTAGATAGGCGGAAATGGAGGAAACCAGGCTCTCTAGAGAGGAAAT
GAAGAATCTACATATTTGAGAATCGAGAACACCAGAGTGTGAGCGTGAGTTGAGGCGAAC
CGAGGTAACCATGGTATANACGTATTTGTGCCANATAATCCACCATCATTGGTAACACAC
TAAAANNCAACACCACAAACACAAACCAGGCCATTTTTGCCAGNCCGCACAAAAGCTTTT
ATTTTCCCCTTTTAATAAAGGGGCTTAATTTNAGCCATTTTGGGCACCTTNGACCCGCGT
CNGTTTTTCACCAACCGTNCACTTNACCATTGNGAAAAAAACCCCTTGTGCGGTTTAACC
CAACATTTAAAATCGNCTTGACANACAAANTTACCCCCTTTTACACAACTTGCGT

consensusID : consensus_8745#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 757
fasta sequence 
                              [CAAAAGGCCGTCGGAATTTAGCGCATTTTTTCTTGTTTTCATCACCGTTCCTCCCGAGCGAGCGTCTCGGTTGCGTGAAAAACGAACCATTTCCCATTGGCAGGCTTGAGTGGCAAGCCGTCGAACGGTAGAATCGCAGCTTCACTTCCTCATGACCGGCTACACACCGCTCGCGACCGAATCGGACACACAGTCGGTGCAGAAAACGACCGTGCTGGACGTGATGCGGCGCTTGCTGCAGCCGAAGAACATGATGGTATCGACCGGGCCGGACAAAACCAACCACCATCGGTACATCTCGATACTGAACATCATCCAGGGTGAGGTGAACCCGTCGCAGGTGCACCAATCGATTCAGCGAATCCGGGAACGGAAGCTGGCCCAGTTCATACCATGGGGTCCGGCCAGCATTCAGGTGGCCCTGTCACGCAGCAGCCCGTACGTGCAGAGCAGTCACCGGGTGACGGGGCTAATGTTGGCCAATCACACCAGCATCTGCTCGCTGTTCGAGCGGGCCCTCGGCCAGATACGACAAGCTGCGCAACGAGGGCGCCTTCCTGGACCAGTTCAAGCGGGAGGACAAATTCAAGGACGATCTGAGCGAGATGGACGAAGCGCGCGATGTGGTGGATGCGCTCGTGCAGGAGTACGAGGTAGCCACCAAGGAGAACTATCTGAGCTGGCATGCGAACCGTGCAAATGGCGGTGCCGGCACGAATCCGTAAGATCACTGGCATGGCATTTCTGCATTGCTTAC]

[+] EMBL CNS0937W             [CAAAAGGCCGTCGGAATTTAGCGCATTTTTTCTTGTTTTCATCACCGTTCCTCCCGAGCGAGCGTCTCGGTTGCGTGAAAAACGAACCATTTCCCATTGGCAGGCTTGAGTGGCAAGCCGTCGAACGGTAGAATCGCAGCTTCACTTCCTCATGACCGGCTACACACCGCTCGCGACCGAATCGGACACACAGTCGGTGCAGAAAACGACCGTGCTGGACGTGATGCGGCGCTTGCTGCAGCCGAAGAACATGATGGTATCGACCGGGCCGGACAAAACCAACCACCATCGGTACATCTCGATACTGAACATCATCCAGGGTGAGGTGAACCCGTCGCAGGTGCACCAATCGATTCAGCGAATCCGGGAACGGAAGCTGGCCCAGTTCATACCATGGGGTCCGGCCAGCATTCAGGTGGCCCTGTCACGCAGCAGCCCGTACGTGCAGAGCAGTCACCGGGTGACGGGGCTAATGTTGGCCAATCACACCAGCATCTGCTCGCTGTTCGAGCGGGCCCTCGGCCAGATACGACAAGCTGCGCAACGAGGGCGCCTTCCTGGACCAGTTCAAGCGGGAGGACAAATTCAAGGACGATCTGAGCGAGATGGACGAAGCGCGCGATGTGGTGGATGCGCTCGTGCAGGAGTACGAGGTAGCCACCAAGGAGAACTATCTGAGCTGGCATGCGAACCGTGCAAATGGCGGTGCCGGCACGAATCCGTAAGATCACTGGCATGGCATTTCTGCATTGCTTAC]




>consensus_8745#1
CAAAAGGCCGTCGGAATTTAGCGCATTTTTTCTTGTTTTCATCACCGTTCCTCCCGAGCG
AGCGTCTCGGTTGCGTGAAAAACGAACCATTTCCCATTGGCAGGCTTGAGTGGCAAGCCG
TCGAACGGTAGAATCGCAGCTTCACTTCCTCATGACCGGCTACACACCGCTCGCGACCGA
ATCGGACACACAGTCGGTGCAGAAAACGACCGTGCTGGACGTGATGCGGCGCTTGCTGCA
GCCGAAGAACATGATGGTATCGACCGGGCCGGACAAAACCAACCACCATCGGTACATCTC
GATACTGAACATCATCCAGGGTGAGGTGAACCCGTCGCAGGTGCACCAATCGATTCAGCG
AATCCGGGAACGGAAGCTGGCCCAGTTCATACCATGGGGTCCGGCCAGCATTCAGGTGGC
CCTGTCACGCAGCAGCCCGTACGTGCAGAGCAGTCACCGGGTGACGGGGCTAATGTTGGC
CAATCACACCAGCATCTGCTCGCTGTTCGAGCGGGCCCTCGGCCAGATACGACAAGCTGC
GCAACGAGGGCGCCTTCCTGGACCAGTTCAAGCGGGAGGACAAATTCAAGGACGATCTGA
GCGAGATGGACGAAGCGCGCGATGTGGTGGATGCGCTCGTGCAGGAGTACGAGGTAGCCA
CCAAGGAGAACTATCTGAGCTGGCATGCGAACCGTGCAAATGGCGGTGCCGGCACGAATC
CGTAAGATCACTGGCATGGCATTTCTGCATTGCTTAC

consensusID : consensus_8745#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 379
fasta sequence 
                              [GATCGCACGAGGTGNAACGCGCGTATTCATTCGATCATGGCTTCACCGTACGCCAAGCTGTACAATCCGGAAAACATTTACCTATCCAAAGACGGAGGCGGTGCGGGTAATAACTGGGCTTCCGGGTTTAGTCAGGGCGAAAAGCTGCACGAGGAAGTGTTTGACATCATCGACCGGGAAGCGGATGGAAGCGACAGTCTGGAGGGATTCGTCCTGTGTCACTCGATCGCGGGTGGTACCGGCTCTGGCATGGGATCGTACATCATGGAGCGGCTGTCGGATCACTTCCCCAAGAAGCTCATCCAGACGTACAGCGTGTTTCCGAATCATGGACGAAATCAGCGACGTTTGGTGCAGCCGTACAACAGTCTACTGACCC]

[+] EMBL BX469425             [GATCGCACGAGGTGNAACGCGCGTATTCATTCGATCATGGCTTCACCGTACGCCAAGCTGTACAATCCGGAAAACATTTACCTATCCAAAGACGGAGGCGGTGCGGGTAATAACTGGGCTTCCGGGTTTAGTCAGGGCGAAAAGCTGCACGAGGAAGTGTTTGACATCATCGACCGGGAAGCGGATGGAAGCGACAGTCTGGAGGGATTCGTCCTGTGTCACTCGATCGCGGGTGGTACCGGCTCTGGCATGGGATCGTACATCATGGAGCGGCTGTCGGATCACTTCCCCAAGAAGCTCATCCAGACGTACAGCGTGTTTCCGAATCATGGACGAAATCAGCGACGTTTGGTGCAGCCGTACAACAGTCTACTGACCC]




>consensus_8745#2
GATCGCACGAGGTGNAACGCGCGTATTCATTCGATCATGGCTTCACCGTACGCCAAGCTG
TACAATCCGGAAAACATTTACCTATCCAAAGACGGAGGCGGTGCGGGTAATAACTGGGCT
TCCGGGTTTAGTCAGGGCGAAAAGCTGCACGAGGAAGTGTTTGACATCATCGACCGGGAA
GCGGATGGAAGCGACAGTCTGGAGGGATTCGTCCTGTGTCACTCGATCGCGGGTGGTACC
GGCTCTGGCATGGGATCGTACATCATGGAGCGGCTGTCGGATCACTTCCCCAAGAAGCTC
ATCCAGACGTACAGCGTGTTTCCGAATCATGGACGAAATCAGCGACGTTTGGTGCAGCCG
TACAACAGTCTACTGACCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8745#0      CCGGGCCGTCGGAATTTAGCGCATTTTTTCTTGTTTTCATCACCGTTCCTTCCGAGCGAG 60
consensus_8745#2      ------------------------------------------------------------
consensus_8745#1      ------------------------------------------------------------
                                                                                  

consensus_8745#0      CGTCTCGGTTGCGTGAAAAACGAACCATTTCCCATTGGCAGGCTTGAGTGGCAAGCCGTC 120
consensus_8745#2      ------------------------------------------------------------
consensus_8745#1      ---------CAAAAGGCCGTCGGAATTTAGCGCATTTTTTCTTGTTTTCATCACCGTTCC 51
                                                                                  

consensus_8745#0      GAACGGTAGAATCGCAGCCCCAGGATGCCCAGAGGTATCATCACGCTCCAGCTGGGCCAG 180
consensus_8745#2      ------------------------------------------------------------
consensus_8745#1      TCCCGAGCGAGCGTCTCGGTTGCGTGAAAAACGAACCATTTCCCATTGGCAGGCTTGAGT 111
                                                                                  

consensus_8745#0      TGCGGCAACCAGATTGGGTTCGAATTTTGGAAACGCCTTTGTCTCGAGCATGGAATCTCA 240
consensus_8745#2      ------------------------------------------------------------
consensus_8745#1      GGCAAGCCGTCGAACGGTAGAATCGCAGCTTCACTTCCTCATGACCGGCTACACACCGCT 171
                                                                                  

consensus_8745#0      CCGTCGGGAATGTTGCGCGAGTTTGCCAGCGATGGCATCGACCGGAAGGATGTGTTTTTC 300
consensus_8745#2      ------------------------------------------------------------
consensus_8745#1      CGCGACCGAATCGGACACACAGTCGGTGCAGAAAACGACCGTGCTGGACGTGATGCGGCG 231
                                                                                  

consensus_8745#0      TACCAGGCGGACGATGACCACTACATTCCCCGGGCGGTTCTGCTGGATTTGGAACCGCGC 360
consensus_8745#2      -----------------------------------GATCGCACGAGGT---GNAACGCGC 22
consensus_8745#1      CTTGCTGCAGCCGAAGAACATGATGGTATCGACCGGGCCGGACAAAACCAACCACCATCG 291
                                                         *      *          * *    

consensus_8745#0      GTAATTCATTCGATCATGG-CTTCACCGTACGCCAAGCTGTACAATCCGGAAAACATTTA 419
consensus_8745#2      GTA-TTCATTCGATCATGG-CTTCACCGTACGCCAAGCTGTACAATCCGGAAAACATTTA 80
consensus_8745#1      GTACATC--TCGATACTGAACATCATCCAGGGTGAGGTGAACCCGTCGCAGGTGCACCAA 349
                      ***  **  *****  **  * *** *    *  * *     *  **       **   *

consensus_8745#0      CCTATCCAAAGA---CGGAGGCGGT-GCGGGTAATAACTGGGCTTCCGGGTTTAGTCAGG 475
consensus_8745#2      CCTATCCAAAGA---CGGAGGCGGT-GCGGGTAATAACTGGGCTTCCGGGTTTAGTCAGG 136
consensus_8745#1      TCGATTCAGCGAATCCGGGAACGGAAGCTGGCCCAGTTCATACCATGGGGTCCGGCCAGC 409
                       * ** **  **   ***   ***  ** **           *    ****   * *** 

consensus_8745#0      G--CGAAAAGCTGCACGAGGAAGTGTTTGACAT-CATCGACCGGGAAGCGGATGGAAGCG 532
consensus_8745#2      G--CGAAAAGCTGCACGAGGAAGTGTTTGACAT-CATCGACCGGGAAGCGGATGGAAGCG 193
consensus_8745#1      ATTCAGGTGGCCCTGTCACGCAGCAGCCCGTACGTGCAGAGCAGTCACCGGGTGACGGGG 469
                         *     **      * * **        *      ** * *  * *** **   * *

consensus_8745#0      ACAGTCTGGAGGGATTCGTCCTGTGTC-ACTCGAT-CGCGGGCGGTACCG-GATCCGGCA 589
consensus_8745#2      ACAGTCTGGAGGGATTCGTCCTGTGTC-ACTCGAT-CGCGGGTGGTACCG-GCTCTGGCA 250
consensus_8745#1      CTAATGTTGGCCAATCACACCAGCATCTGCTCGCTGTTCGAGCGGGCCCTCGGCCAGATA 529
                        * * * *    **    ** *  **  **** *   ** * **  **  *  * *  *

consensus_8745#0      TGGGCTCGTACATCATGGAGCGGCTGTC--GGATCACTTCCCCAAGAAGCTCATCCAGAC 647
consensus_8745#2      TGGGATCGTACATCATGGAGCGGCTGTC--GGATCACTTCCCCAAGAAGCTCATCCAGAC 308
consensus_8745#1      CGACAAGCTGCGCAACGAGGGCGCCTTCCTGGACCAGTTCAAGCGGGAGGACAAATTCAA 589
                       *      * *   * *  *  **  **  *** ** ***     * **  **     * 

consensus_8745#0      GTACAGCGTGTTTCCGAATCA-GGACGAAATCAGCGACGTTGTGG-TGCAGCCGTACAAC 705
consensus_8745#2      GTACAGCGTGTTTCCGAATCATGGACGAAATCAGCGACGTT-TGG-TGCAGCCGTACAAC 366
consensus_8745#1      GGACGATCTGAG--CGAG--ATGGACGAAGCGCGCGATGTGGTGGATGCGCTCGTGCAGG 645
                      * **    **    ***   * *******    **** **  *** ***   *** **  

consensus_8745#0      AGTCTACTG-ACCCTTCGCCGGCTGACCAGCTGTGCGGACTGCGTGGTCGTGCTGGACAA 764
consensus_8745#2      AGTCTACTG-ACCC---------------------------------------------- 379
consensus_8745#1      AGTACGAGGTAGCCACCAAGGAGAACTATCTGAGCTGGCATGCGAACCGTGCAAATGGCG 705
                      ***     * * **                                              

consensus_8745#0      TACTGCACTGAACCGTATCGCGACGGATTGGCTTCATCTGGATAACCCCAGCTTCGCTCA 824
consensus_8745#2      ------------------------------------------------------------
consensus_8745#1      GTGCCGGCACGAATCCGTAAGATCACTGGCATGGCATTTCTGCATTGCTTAC-------- 757
                                                                                  

consensus_8745#0      GATCAACACGCTCGTCTCCACCATCATGTCCGTCAGCACGACCACCCTACGCTACCCATC 884
consensus_8745#2      ------------------------------------------------------------
consensus_8745#1      ------------------------------------------------------------
                                                                                  

consensus_8745#0      GTACATGAACAACAATCTGATCGAGCTGATTGCCCCACTGATTCCGACTTCGCAGCTTCA 944
consensus_8745#2      ------------------------------------------------------------
consensus_8745#1      ------------------------------------------------------------
                                                                                  

consensus_8745#0      CTTCCTCATGACCGGCTACACACCGCTCGCGACCGAATCGGACACACAGTCGGTGCAGAA 1004
consensus_8745#2      ------------------------------------------------------------
consensus_8745#1      ------------------------------------------------------------
                                                                                  

consensus_8745#0      AACGACCGTGCTGGACGTGATGCGGCGCTTGCTGCAGCCGAAGAACATGATGGTATCGAC 1064
consensus_8745#2      ------------------------------------------------------------
consensus_8745#1      ------------------------------------------------------------
                                                                                  

consensus_8745#0      CGGGCCGGACAAAACCAACCACCATCGGTACATCTCGATACTGAACATCATCCAGGGTGA 1124
consensus_8745#2      ------------------------------------------------------------
consensus_8745#1      ------------------------------------------------------------
                                                                                  

consensus_8745#0      GGTGAACCCGTCCCAGGTGCACCAATCGATTCAGCGAATCCGGGAACGGAAGCTGGCCCA 1184
consensus_8745#2      ------------------------------------------------------------
consensus_8745#1      ------------------------------------------------------------
                                                                                  

consensus_8745#0      GTTCATACCATGGGGTCCGGCCAGCATTCAGGTGGCCCTGTCACGCAGCAGCCCGTACGT 1244
consensus_8745#2      ------------------------------------------------------------
consensus_8745#1      ------------------------------------------------------------
                                                                                  

consensus_8745#0      GCAGAGCAGTCACCGGGTGACGGGGCTAATGTTGGCCAATCACACCAGCATCTGCTCGCT 1304
consensus_8745#2      ------------------------------------------------------------
consensus_8745#1      ------------------------------------------------------------
                                                                                  

consensus_8745#0      GTTCGAGCGGGCCCTCGGCCAGTACGACAAGCTGCGCAAGCGAGGCGCCTTCCTGGACCA 1364
consensus_8745#2      ------------------------------------------------------------
consensus_8745#1      ------------------------------------------------------------
                                                                                  

consensus_8745#0      GTTCAAGCGAGAGGGACAATTCAAAGACGATCTGAGCGAGATGGACGAAGCGCGCGATGT 1424
consensus_8745#2      ------------------------------------------------------------
consensus_8745#1      ------------------------------------------------------------
                                                                                  

consensus_8745#0      GGTGGATGCGCTCGTGCAGGAGTACGAGGTAGCCACCAAGGAGAACTATCTGAGCTGGCA 1484
consensus_8745#2      ------------------------------------------------------------
consensus_8745#1      ------------------------------------------------------------
                                                                                  

consensus_8745#0      TGCGAACCGTGCAAATGGTGGTGCCGGCACGAATCCGTAAGATCACTGGCATTGCTCTGC 1544
consensus_8745#2      ------------------------------------------------------------
consensus_8745#1      ------------------------------------------------------------
                                                                                  

consensus_8745#0      ATTGCTTACAAGGAAGGTTTTTAATTATATCGTTACTAGAGGATGGCGTTTGGCGCGGAG 1604
consensus_8745#2      ------------------------------------------------------------
consensus_8745#1      ------------------------------------------------------------
                                                                                  

consensus_8745#0      AAGGGTATTAATAGAATCGCATAGCTAACGTTAGATAGGCGGAAATGGAGGAAACCAGGC 1664
consensus_8745#2      ------------------------------------------------------------
consensus_8745#1      ------------------------------------------------------------
                                                                                  

consensus_8745#0      TCTCTAGAGAGGAAATGAAGAATCTACATATTTGAGAATCGAGAACACCAGAGTGTGAGC 1724
consensus_8745#2      ------------------------------------------------------------
consensus_8745#1      ------------------------------------------------------------
                                                                                  

consensus_8745#0      GTGAGTTGAGGCGAACCGAGGTAACCATGGTATANACGTATTTGTGCCANATAATCCACC 1784
consensus_8745#2      ------------------------------------------------------------
consensus_8745#1      ------------------------------------------------------------
                                                                                  

consensus_8745#0      ATCATTGGTAACACACTAAAANNCAACACCACAAACACAAACCAGGCCATTTTTGCCAGN 1844
consensus_8745#2      ------------------------------------------------------------
consensus_8745#1      ------------------------------------------------------------
                                                                                  

consensus_8745#0      CCGCACAAAAGCTTTTATTTTCCCCTTTTAATAAAGGGGCTTAATTTNAGCCATTTTGGG 1904
consensus_8745#2      ------------------------------------------------------------
consensus_8745#1      ------------------------------------------------------------
                                                                                  

consensus_8745#0      CACCTTNGACCCGCGTCNGTTTTTCACCAACCGTNCACTTNACCATTGNGAAAAAAACCC 1964
consensus_8745#2      ------------------------------------------------------------
consensus_8745#1      ------------------------------------------------------------
                                                                                  

consensus_8745#0      CTTGTGCGGTTTAACCCAACATTTAAAATCGNCTTGACANACAAANTTACCCCCTTTTAC 2024
consensus_8745#2      ------------------------------------------------------------
consensus_8745#1      ------------------------------------------------------------
                                                                                  

consensus_8745#0      ACAACTTGCGT 2035
consensus_8745#2      -----------
consensus_8745#1      -----------


Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)