These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8767#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 615 fasta sequence [CTGCGGTCTGCCAAGCCGCTGCCAAGTCGGTGCTCGCATTGGCCAATTCTATACACGAATTCAATGTTCTACCATTATCGTGGGCAGTTGTGTTCATCGCCTCATTTTGCAGTGAAATGTTCGACCCGACAGATCATCAACACCGCCGTTACAATCCACTGAACGGGCAGTGGGTGCTGGTGAGTCCGCATCGCATGAAGCGGCCCTGGTCGGGCCAGGAAGAAAATCCCCAGCCAGAGAATCTTCCCTCGTTTGATCCAACGAACCCGCTGTGTCCGGGAGTGACCCGCCCGAATGGAACCAAAAATCCCATCTACGAGTCAACGTTCGTGTTTACGAACGACTTTCCGGCCCTGCTGGAGCAGGTACCGGAGCCCCCGTCCAGCGATGATCCGCTGTTCCAGATAGCACCGGCGCAGGGCACCTGCCGGGTGATGTGCTTCCATCCGAAGTCTAACAAAACGCTACCACTGATGACGCCCAAGGAGATACGCAATGTTATTGATGCGTGGATCGCGGAATTCCGCACGCTGGCGCA-CGGTACCAATGGGTGCAGATTTTCGAAAACAAGGGTGCAACGATGGGCTGCTCGAACCCGCATCCACACTGCCAGAT] [+] EMBL CNS08DR5 [CTGCGGTCTGCCAAGCCGCTGCCAAGTCGGTGCTCGCATTGGCCAATTCTATACACTCATTCAATGTTCTACCATTATCGTGGGCAGTTGTGTTCATCGCCTCATTTTGCAGTGAAATGTTCGACCCGACAGATCATCAACACCGCCGTTACAATCCACTGAACGGGCAGTGGGTGCTGGTGAGTCCGCATCGCATGAAGCGGCCCTGGTCGGGCCAGGAAGAAAATCCCCAGCCAGAGAATCTTCCCTCGTTTGATCCAACGAACCCGCTGTGTCCGGGAGTGACCCGCCCGAATGGAACCAAAAATCCCATCTACGAGTCAACGTTCGTGTTTACGAACGACTTTCCGGCCCTGCTGGAGCAGGTACCGGAGCCCCCGTCCAGCGGTGATCCGCTGTTCCAGATAGCACCGGCGCAGGGCACCTGCCGGGTGATGTGCTTCCATCCGAAGTCTAACAAAACGCTACCACTGATGACGCCCAAGGAGATACGCAATGTTATTGATGCGTGGATCGCGGAATTCCGCACGCTGGCGCA CGGTACCAATGGGTGCAGATTTTCGAAAACA ] [+] EMBL CNS09FGI [ tgGAATTCAATGTTCTACCATTATCGTGGGCAGTTGTGTTCATCGCCTCATTTTGCAGTGAAATGTTCGACCCGACAGATCATCAACACCGCCGTTACAATCCACTGAACGGGCAGTGGGTGCTGGTGAGTCCGCATCGCATGAAGCGGCCCTGGTCGGGCCAGGAAGAAAATCCCCAGCCAGAGAATCTTCCCTCGTTTGATCCAACGAACCCGCTGTGTCCGGGAGTGACCCGCCCGAATGGAACCAAAAATCCCATCTACGAGTCAACGTTCGTGTTTACGAACGACTTTCCGGCCCTGCTGGAGCAGGTACCGGAGCCCCCGTCCAGCGATGATCCGCTGTTCCAGATAGCACCGGCGCAGGGCACCTGCCGGGTGATGTGCTTCCATCCGAAGTCTAACAAAACGCTACCACTGATGACGCCCAAGGAGATACGCAATGTTATTGATGCGTGGATCGCGGAATTCCGCACGCTGGCGCA CGGTACCAATGGGTGCAGATTTTCGAAAACA ] [+] EMBL CNS08V9Z [ tagATTCAATTTTCTACCATTATCGTGGGCAGTTGTGTTCATCGCCTCATTTTGCAGTGAAATGTTCGACCCGACAGATCATCAACACCGCCGTTACAATCCACTGAACGGGCAGTGGGTGCTGGTGAGTCCGCATCGCATGAAGCGGCCCTGGTCGGGCCAGGAAGAAAATCCCCAGCCAGAGAATCTTCCCTCGTTTGATCCAACGAACCCGCTGTGTCCGGGAGTGACCCGCCCGAATGGAACCAAAAATCCCATCTACGAGTCAACGTTCGTGTTTACGAACGACTTTCCGGCCCTGCTGGAGCAGGTACCGGAGCCCCCGTCCAGCGATGATCCGCTGTTCCAGATAGCACCGGCGCAGGGCACCTGCCGGGTGATGTGCTTCCATCCGAAGTCTAACAAAACGCTACCACTGATGACGCCCAAGGAGATACGCAATGTTATTGATGCGTGGATCGCGGAATTCCGCACGCTGGCGCA CGGTACCAATGGGTGCAGATTTTCGAAAACA ] [+] EMBL CNS097JI [ tTTCTACCATTATCGTGGGCAGTTGTGTTCATCGCCTCATTTTGCAGTGAAATGTTCGACCCGACAGATCATCAACACCGCCGTTACAATCCACTGAACGGGCAGTGGGTGCTGGTGAGTCCGCATCGCATGAAGCGGCCCTGGTCGGGCCAGGAAGAAAATCCCCAGCCAGAGAATCTTCCCTCGTTTGATCCAACGAACCCGCTGTGTCCGGGAGTGACCCGCCCGAATGGAACCAAAAATCCCATCTACGAGTCAACGTTCGTGTTTACGAACGACTTTCCGGCCCTGCTGGAGCAGGTACCGGAGCCCCCGTCCAGCGATGATCCGCTGTTCCAGATAGCACCGGCGCAGGGCACCTGCCGGGTGATGTGCTTCCATCCGAAGTCTAACAAAACGCTACCACTGATGACGCCCAAGGAGATACGCAATGTTATTGATGCGTGGATCGCGGAATTCCGCACGCTGGCGCA CGGTACCAATGGGTGCAGATTTTCGAAAACA ] [+] EMBL CNS09BHY [ CTACCATTATCGTGGGCAGTTGTGTTCATCGCCTCATTTTGCAGTGAAATGTTCGACCCGACAGATCATCAACACCGCCGTTACAATCCACTGAACGGGCAGTGGGTGCTGGTGAGTCCGCATCGCATGAAGCGGCCCTGGTCGGGCCAGGAAGAAAATCCCCAGCCAGAGAATCTTCCCTCGTTTGATCCAACGAACCCGCTGTGTCCGGGAGTGACCCGCCCGAATGGAACCAAAAATCCCATCTACGAGTCAACGTTCGTGTTTACGAACGACTTTCCGGCCCTGCTGGAGCAGGTACCGGAGCCCCCGTCCAGCGATGATCCGCTGTTCCAGATAGCACCGGCGCAGGGCACCTGCCGGGTGATGTGCTTCCATCCGAAGTCTAACAAAACGCTACCACTGATGACGCCCAAGGAGATACGCAATGTTATTGATGCGTGGATCGCGGAATTCCGCACGCTGGCGCA CGGTACCAATGGGTGCAGATTTTCGAAAACA ] [+] EMBL CNS09PTY [ ATTATCGTGGGCAGTTGTGTTCATCGCCTCATTTTGCAGTGAAATGTTCGACCCGACAGATCATCAACACCGCCGTTACAATCCACTGAACGGGCAGTGGGTGCTGGTGAGTCCGCATCGCATGAAGCGGCCCTGGTCGGGCCAGGAAGAAAATCCCCAGCCAGAGAATCTTCCCTCGTTTGATCCAACGAACCCGCTGTGTCCGGGAGTGACCCGCCCGAATGGAACCAAAAATCCCATCTACGAGTCAACGTTCGTGTTTACGAACGACTTTCCGGCCCTGCTGGAGCAGGTACCGGAGCCCCCGTCCAGCGATGATCCGCTGTTCCAGATAGCACCGGCGCAGGGCACCTGCCGGGTGATGTGCTTCCATCCGAAGTCTAACAAAACGCTACCACTGATGACGCCCAA ] [+] EMBL BX610799 [ ATTTTGCAGTGAAATGTTCGACCCGACAGATCATCAACACCGCCGTTACAATCCACTGAACGGGCAGTGGGTGCTGGTGAGTCCGCATCGCATGAAGCGGCCCTGGTCGGGCCAGGAAGAAAATCCCCAGCCAGAGAATCTTCCCTCGTTTGATCCAACGAACCCGCTGTGTCCGGGAGTGACCCGCCCGAATGGAACCAAAAATCCCATCTACGAGTCAACGTTCGTGTTTACGAACGACTTTCCGGCCCTGCTGGAGCAGGTACCGGAGCCCCCGTCCAGCGATGATCCGCTGTTCCAGATAGCACCGGCGCAGGGCACCTGCCGGGTGATGTGCTTCCATCCGAAGTCTAACAAAACGCTACCACTGATGACGCCCAAGGAGATACGCAATGTTATTGATGCGTGGATCGCGGAATTCCGCACGCTGGCGCAGCGGTACCAATGGGTGCAGATTTTCGAAAACAAGGGTGCAACGATGGGCTGCTCGAACCCGCATCCACACTGCCAGAT] [+] EMBL BX610798 [ TGTTCGACCCGACAGATCATCAACACCGCCGTTACTTTCCACTGAACGGGCAGTGGGTGCTGGTGAGTCCGCATCGCATGAAGCGGCCCTGGTCGGGCCAGGAAGAAAATCCCCAGCCAGAGAATCTTCCCTCGTTTGATCCAACGAACCCGCTGTGTCCGGGAGTGACCCGCCCGAATGGAACCAAAAATCCCATCTACGAGTCAACGTTCGTGTTTACGAACGACTTTCCGGCCCTGCTGGAGCAGGTACCGGAGCCCCCGTCCAGCGATGATCCGCTGTTCCAGATAGCACCGGCGCAGGGCACCTGCCGGGTGATGTGCTTCCATCCGAAGTCTAACAAAACGCTACCACTGATGACGCCCAAGGAGATACGCAATGTTATTGATGCGTGGATCGCGGAATTCC ] [+] EMBL BX628182 [ AACACCGCCGTTACAATCCACTGAACGGGCAGTGGGTGCTGGTGAGTCCGCATCGCATGAAGCGGCCCTGGTCGGGCCAGGAAGAAAATCCCCAGCCAGAGAATCTTCCCTCGTTTGATCCAACGAACCCGCTGTGTCCGGGAGTGACCCGCCCGAATGGAACCAAAAATCCCATCTACGAGTCAACGTTCGTGTTTACGAACGACTTTCCGGCCCTGCTGGAGCAGGTACCGGAGCCCCCGTCCAGCGATGATCCGCTGTTCCAGATAGCACCGGCGCAGGGCACCTGCCGGGTGATGTGCTTCCATCCGAAGTCTAACAAAACGCTACCACTGATGACGCCCAAGGAGATACGCAATGTTATTGATGCGTGGATCGCGGAATTCCGCACGCTGGCGCAGCGGTACCAATGGGTGCAGATTTTCGAAAACA ] consensusID : consensus_8767#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 559 fasta sequence [CGGCACGAGGNTGTAGTTGTGTTCATCGCCTCATTTTCGCAGTGAAATGTTCGACCCGACAGATCATCAACACCGCCGTTACAATCCACTGAACGGGCAGTGGGTGCTGGTGAGTCCGCATCGCATGAAGCGGCCCTGGTCGGGCCAGGAAGAAAATCCCCAGCCAGAGAATCTTCCCTCGTTTGATCCAACGAACCCGCTGTGTCCGGGAGTGACCCGCCCGAATGGAACCAAGAAATCCCATCTACGAGTCAACGTTCGTGTTTACGAACGAGCTTTCCGGCCCTGCTGGAGCAGGTACCGGAGCCCCCGTCCAGCGATGATCCGCTGTTCCCAGGATAGCACCGGCGCAGGGGCGACCTGCCGGGGTGATAGTGCTTCCATCCGAAGTCTAACAGNAACGCTAGCCACTGATTGGACGGCCCAAGGGAGATACGCAACTGTTATTTGATGGCGTGGATCGCGGAATTCCGCACGCTGGCCGCACGACGGTTACCAATGGGTGCAGATATTTCGAGAAACACAAGGGTGCCAACGAATAGGGCTGCGTCGAAACCCG] [+] EMBL BX469641 [CGGCACGAGGNTGTAGTTGTGTTCATCGCCTCATTTTCGCAGTGAAATGTTCGACCCGACAGATCATCAACACCGCCGTTACAATCCACTGAACGGGCAGTGGGTGCTGGTGAGTCCGCATCGCATGAAGCGGCCCTGGTCGGGCCAGGAAGAAAATCCCCAGCCAGAGAATCTTCCCTCGTTTGATCCAACGAACCCGCTGTGTCCGGGAGTGACCCGCCCGAATGGAACCAAGAAATCCCATCTACGAGTCAACGTTCGTGTTTACGAACGAGCTTTCCGGCCCTGCTGGAGCAGGTACCGGAGCCCCCGTCCAGCGATGATCCGCTGTTCCCAGGATAGCACCGGCGCAGGGGCGACCTGCCGGGGTGATAGTGCTTCCATCCGAAGTCTAACAGNAACGCTAGCCACTGATTGGACGGCCCAAGGGAGATACGCAACTGTTATTTGATGGCGTGGATCGCGGAATTCCGCACGCTGGCCGCACGACGGTTACCAATGGGTGCAGATATTTCGAGAAACACAAGGGTGCCAACGAATAGGGCTGCGTCGAAACCCG] [+] EMBL BX610800 [ AGAACATCAACACCGCCGTTACAATCCACCGAACGGGCAGTGGGTGCGGGTGAGTCCGCATCGCATGAAGCGGCCCTGGTCGGGCCAGGAAGAAAATCCCCAGCCAGAGAATCTTCCCTCGTTGGATCCAACGAACCCGCTGTGTCCGGGAGTGACCCGCCC ] consensusID : consensus_8767#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 448 fasta sequence [CCGCCCACGCGTCCGCCATTATCGTGGGCAGTTGTGTTCATCGCCTCATTTTGCAGTGAAATGTTCGACCCGACAGATCATCAACAGCGCCGGTACAATCCACTGAACGGGCAGTGGGTGCTGGTGAGTCCGCATCGCATGAAGCGGCCCTGGTCTGGTCAGGAAGAAAATCCCCATCCAGAGAATCTTCCCTCGTTTGATCCAACGAACCCGCTGTGTCCGGGAGTGACCCGCCCGAATGGAACCAAAAATCCCATCTACGAGTCAACGTTCGTGTTTACGAACGACTTTCCGGCCCTGCTGGAGCAGGTACCGGAGCCCCCGTCCAGCGATGATCCGCTGTTCCAGATAGCACCGGCGCAGGGCACCTGCCGGGTGATGTGCTTCCATCCGAAGTCTAACAAAACGCTACCACTGATGACGCCCAAGGAGATACGCAATGTTATTG] [+] EMBL BM630324 [CCGCCCACGCGTCCGCCATTATCGTGGGCAGTTGTGTTCATCGCCTCATTTTGCAGTGAAATGTTCGACCCGACAGATCATCAACAGCGCCGGTACAATCCACTGAACGGGCAGTGGGTGCTGGTGAGTCCGCATCGCATGAAGCGGCCCTGGTCTGGTCAGGAAGAAAATCCCCATCCAGAGAATCTTCCCTCGTTTGATCCAACGAACCCGCTGTGTCCGGGAGTGACCCGCCCGAATGGAACCAAAAATCCCATCTACGAGTCAACGTTCGTGTTTACGAACGACTTTCCGGCCCTGCTGGAGCAGGTACCGGAGCCCCCGTCCAGCGATGATCCGCTGTTCCAGATAGCACCGGCGCAGGGCACCTGCCGGGTGATGTGCTTCCATCCGAAGTCTAACAAAACGCTACCACTGATGACGCCCAAGGAGATACGCAATGTTATTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8767#0 CTGCGGTCTGCCAAGCCGCTGCCAAGTCGGTGCTCGCATTGGCCAATTCTATACACGAAT 60 consensus_8767#2 --------------------------------------------------------CCGC 4 consensus_8767#1 ------------------------------------------------------------ consensus_8767#0 TCAATGTTCTACCATTATCGTGGGCAGTTGTGTTCATCGCCTCATTTT-GCAGTGAAATG 119 consensus_8767#2 CCACGCGTCCGCCATTATCGTGGGCAGTTGTGTTCATCGCCTCATTTT-GCAGTGAAATG 63 consensus_8767#1 ---------CGGCACGA--GGNTGTAGTTGTGTTCATCGCCTCATTTTCGCAGTGAAATG 49 ** * * * *********************** *********** consensus_8767#0 TTCGACCCGACAGATCATCAACACCGCCGTTACAATCCACTGAACGGGCAGTGGGTGCTG 179 consensus_8767#2 TTCGACCCGACAGATCATCAACAGCGCCGGTACAATCCACTGAACGGGCAGTGGGTGCTG 123 consensus_8767#1 TTCGACCCGACAGATCATCAACACCGCCGTTACAATCCACTGAACGGGCAGTGGGTGCTG 109 *********************** ***** ****************************** consensus_8767#0 GTGAGTCCGCATCGCATGAAGCGGCCCTGGTCGGGCCAGGAAGAAAATCCCCAGCCAGAG 239 consensus_8767#2 GTGAGTCCGCATCGCATGAAGCGGCCCTGGTCTGGTCAGGAAGAAAATCCCCATCCAGAG 183 consensus_8767#1 GTGAGTCCGCATCGCATGAAGCGGCCCTGGTCGGGCCAGGAAGAAAATCCCCAGCCAGAG 169 ******************************** ** ***************** ****** consensus_8767#0 AATCTTCCCTCGTTTGATCCAACGAACCCGCTGTGTCCGGGAGTGACCCGCCCGAATGGA 299 consensus_8767#2 AATCTTCCCTCGTTTGATCCAACGAACCCGCTGTGTCCGGGAGTGACCCGCCCGAATGGA 243 consensus_8767#1 AATCTTCCCTCGTTTGATCCAACGAACCCGCTGTGTCCGGGAGTGACCCGCCCGAATGGA 229 ************************************************************ consensus_8767#0 ACCAA-AAATCCCATCTACGAGTCAACGTTCGTGTTTACGAACGA-CTTTCCGGCCCTGC 357 consensus_8767#2 ACCAA-AAATCCCATCTACGAGTCAACGTTCGTGTTTACGAACGA-CTTTCCGGCCCTGC 301 consensus_8767#1 ACCAAGAAATCCCATCTACGAGTCAACGTTCGTGTTTACGAACGAGCTTTCCGGCCCTGC 289 ***** *************************************** ************** consensus_8767#0 TGGAGCAGGTACCGGAGCCCCCGTCCAGCGATGATCCGCTGTTCC--AGATAGCACCGGC 415 consensus_8767#2 TGGAGCAGGTACCGGAGCCCCCGTCCAGCGATGATCCGCTGTTCC--AGATAGCACCGGC 359 consensus_8767#1 TGGAGCAGGTACCGGAGCCCCCGTCCAGCGATGATCCGCTGTTCCCAGGATAGCACCGGC 349 ********************************************* ************ consensus_8767#0 GCAGGGC--ACCTGCCGGG-TGAT-GTGCTTCCATCCGAAGTCTAACA-AAACGCTA-CC 469 consensus_8767#2 GCAGGGC--ACCTGCCGGG-TGAT-GTGCTTCCATCCGAAGTCTAACA-AAACGCTA-CC 413 consensus_8767#1 GCAGGGGCGACCTGCCGGGGTGATAGTGCTTCCATCCGAAGTCTAACAGNAACGCTAGCC 409 ****** ********** **** *********************** ******* ** consensus_8767#0 ACTGAT--GACGCCC--AAGGAGATACGCAA-TGTTATT-GATG-CGTGGATCGCGGAAT 522 consensus_8767#2 ACTGAT--GACGCCC--AAGGAGATACGCAA-TGTTATT-G------------------- 448 consensus_8767#1 ACTGATTGGACGGCCCAAGGGAGATACGCAACTGTTATTTGATGGCGTGGATCGCGGAAT 469 ****** **** ** * ************ ******* * consensus_8767#0 TCCGCACGCTGGC-GCACGG----TACCAATGGGTGCAGATTTTC--GAAAACAAGGGTG 575 consensus_8767#2 ------------------------------------------------------------ consensus_8767#1 TCCGCACGCTGGCCGCACGACGGTTACCAATGGGTGCAGATATTTCGAGAAACACAAGGG 529 consensus_8767#0 CAACGATGGGCTGCTCGAACCCGCATCCACACTGCCAGAT 615 consensus_8767#2 ---------------------------------------- consensus_8767#1 TGCCAACGAATAGGGCTGCGTCGAAACCCG---------- 559 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||