These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8798#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 640 fasta sequence [GATCGCCNGAGGTGCCGGTGCGAGCGGTGCCAGTGTCCCTATTCTACCTCGAATCCAATCCCATTACCATGTCGAAGCTTTACCACGGTGTCATCAATGTGGCCGATAAGTTTGTCCCCAACGCGTTGCGGCCCCTGTGGAACCACGCTGCTGGACCGAAAACAGTTTTCTTCTGGGCGCCCGTCTTTAAATGGGGCTTGGTCGTAGCCGGATTGAGT-GACCTTCGACGTCCTGCGGACCAGCTGTCAGTTTCGCAGTCCGCTTCACTGGCGGCAACCGGAATAATTTGGTCGCGCTACTCGCTGGTGATCATTCCC---AAAAA----TT---GGGGCCTCTTCTCGGTGAACGTGTTCGTCGCCGGTACGCAAGTACTGCAACTGTATCGCGCGTGGGACTTTTCGCGCAAGGCACCGAAAACCGCTGCCTAGACGAATACGCAAGTGCGAATGCCGTACCTGCGGACTAATAACTCAATGTGAAAATCGAAGCAGTATTTATAAAACGCTGCTATTTTTATAAACACTATTTCTGAAACTGTACAGTGCAGGTTTGATGTAAATGATATTAGAAGGTGTACAGTATAAATATATGCACAAAAGATAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCTCTTTTTT] [+] EMBL AL930897 [GATCGCCNGAGGTGTTAGTGCGAGCGGTG CAGTGTCCCTATT TAACTCGAATNCAATCCCATTACCATGTCGAAGCTTTACCACGGTGTCATCAATGTGGCCGATAAGTTTGTCCCCAACGCGTTGCGG CCCTGTGGAACCACGCTGCTGGACCGAAAACAGTTTTCTTCTGGGCGCCCGTCTTTAAATGGGGCTTGGTCGTAGCCGGATTGAGT GA CTTCGACGTCCTGCGGACCAGCTGTCAGTTTCGCAGTCCGCTTCACTGGCGGCAACCGGAATAATTTGGTCGCGCTACTCGCTGGTGATCATTCCCCAAAAAAACTTTTTGGGGGGGCCTCTTCCCGGTGAACGTGTTCGTCGCCGGTACGCAAGTACTG AACTGTATCGCGCGTGGGACTTTTCGCGCAAGGCACCGAAAACCGCTGCCTAGACGAATACGCAAGTGCGAATGCCGTACCTGCGGACTAATAACTCAATGTGAAAATCGAAGCAGTATTTATAAAACGCTG TATTTTTATAAACA ] [+] EMBL BM621949 [ CCGGTGCGAGCGGTGCCAGTGTCCCTATTCTACCTCGAATCCAATCCCATTACCATGTCGAAGCTTTACCACGGTGTCATCAATGTGGCCGATAAGTTTGTCCCCAACGCGTTGCGGCCCCTGTGGAACCACGCTGCTGGACCGAAAACAGTTTTCTTCTGGGCGCCCGTCTTTAAATGGGGCTTGGTCGTAGCCGGATTGAGTGGACCTTCGACGTCCTGCGGACCAGCTGTCAGTTTCGCAGTCCGCTTCACTGGCGGCAACCGGAATAATTTGGTCGCGCTACTCGCTGGTGATCATTCCC AAAAA TT GGGGCCTCTTCTCGGTGAACGTGTTCGTCGCCGGTACGCAAGTACTGCAGCTGTATCGCGCGTGGGACTTTTCGCGCAAGGCACCGAAAACCGCTGCCTAGACGAATACGCAAGTGCGAATGCCGTACCTGCGGACTAATAACTCAATGTGAAAATCGAAGCAGTTTTTTTAAAACGCTGCTATTTTTATAAACACTATTTCTGAAACTGTACAGTGCAGGTTTGATGTAAATGATATTAGAAGGTGTACAGTATAAATATATGCACAAAAGAT ] [+] EMBL BM619963 [ CCGGTGCGAGCGGTGCCAGTGTCCCTATTCTACCTCGAATCCAATCCCATTACCATGTCGAAGCTTTACCACGGTGTCATCAATGTGGCCGATAAGTTTGTCCCCAACGCGTTGCGGCCCCTGTGGAACCACGCTGCTGGACCGAAAACAGTTTTCTTCTGGGCGCCCGTCTTTAAATGGGGCTTGGTCGTAGCCGGATTGAGT GACCTTCGACGTCCTGCGGATCAGCTGTCAGTTTCGCAGTCCGCTTCACTGGCGGCAACCGGAATAATTTGGTCGCGCTACTCGTTGGTGATCATTCCC AAAAA TT GGGGCCTCTTCTCGGTGAACGTGTTCGTCGCCGGTACGCAAGTACTGCAACTGTATCGCGCGTGGGACTTTTCGCGCAAGGCACCGAAAACCGCTGCCTAGACGAATACGCAAGTGCGAATGCCGTACCTGCGGACTAATAACTCAATGTGAAAATCGAAGCAGTTTTTATAAAACGCTGCTATTTTTATAAACACTATTTCTGAAACTGTACAGTGCAGGTTTGATGTAAATGATATTAGAAGGTGTACAGTATAAATATATGCAC ] [+] EMBL CNS08IE6 [ CAGTGTCCCTATTCTACCTCGAATCCAATCCCATTACCATGTCGAAGCTTTACCACGGTGTCATCAATGTGGCCGATAAGTTTGTCCCCAACGCGTTGCGGCCCCTGTGGAACCACGCTGCTGGACCGAAAACAGTTTTCTTCTGGGCGCCCGTCTTTAAATGGGGCTTGGTCGTAGCCGGATTGAGT GACCTTCGACGTCCTGCGGACCAGCTGTCAGTTTCGCAGTCCGCTTCACTGGCGGCAACCGGAATAATTTGGTCGCGCTACTCGCTGGTGATCATTCCC AAAAA TT GGGGCCTCTTCTCGGTGAACGTGTTCGTCGCCGGTACGCAAGTACTGCAACTGTATCGCGCGTGGGACTTTTCGCGCAAGGCACCGAAAACCGCTGCCTAGACGAATACGCAAGTGCGAATGCCGTACCTGCGGACTAATAACTCAATGTGAAAATCGAAGCAGTATTTATAAAACGCTGCTATTTTTATAAACACTATTTCTGAAACTGTACAGTGCAGGTTTGATGTAAATGATATTAGAAGGTGTACAGTATAAATATATGCACAAAAGATAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCTCTTTTTT] [-] EMBL CNS08IE7 [ TCGAAGCTTTACCACGGTGTCATCAATGTGGCCGATAAGTTTGTCCCCAACGCGTTGCGGCCCCTGTGGAACCACGCTGCTGGACCGAAAACAGTTTTCTTCTGGGCGCCCGTCTTTAAATGGGGCTTGGTCGTAGCCGGATTGAGT GACCTTCGA ACCCTGCGGACCAGCTGTCAGTTTCGCAGTCCGCTTAACTGGCGGCAACCGGAATAATTTGGTCGCGCTACTCGCTGGTGATCATTCCC AAAAA TT GGGGCCTCTTCTCGGTGAACGTGTTCGTCGCCGGTACGCAAGTACTGCAACTTTTTCGCGCGTGGGACTTTTCGCGCAAGGCACCGAAAACCGCTGCCTAGACGAATACGCAAGTGCGAATGCCGT CCTGCGGACTAATAACTCAATGTGAAAATCGAAGCAGTATTTATAAAACGCTGCTATTTTTATAAACACTATTTCTGAAACTGTACAGTGCAGGTTTGATGTAAATGATATTAGAAGGTGTACAGTA ] consensusID : consensus_8798#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 608 fasta sequence [CCGCCCACCCGTCCG-GCGGTGCCAGTGTCCCTATTCTACCTCGAATCCAATCCCATTACCATGTCGAAGCTTTACCACGGTGTCATCAATGTGGCCGATAAGTTTGTCCCCAACGCGTTGCGGCCCCTGTGGAACCACGCTGCTGGACCGAAAACAGTTTTCTTCTGGGCGCCCGTCTTTAAATGGGGCTTGGTCGTAGCCGGATTGAGTGACCTTCGACGTCCTGCGGATCAGCTGTCAGTTTCGCAGTCCGCTTCACTGGCGGCAACCGGAATAATTTGGTCGCGCTACTCGCTGGTGATCATTCCCAAAAATTGGGGCCTCTTCTCGGTGAACGTGTTCGTCGCCGGTACGCAAGTACTGCAACTGTATCGCGCGTGGGACTTTTCGCGCAAGGCACCGAAAACCGCTGCCTAGACGAATACGCAAGTGCGAATGCCGTACCTGCGGACTAATAACTCAATGTGAAAATCGAAGCAGTTTTTATAAAACGCTGCTATTTTTATAAACACTATTTCTGAAACTGTACAGTGCAGGTTTGATGTAAATGATATTAGAAGGTGTACAGTATAAATATATGCACAAAAGATAAAAACGATCTGTAGTAG] [+] EMBL BM590109 [CCGCCCACGCGTCCG GCGGTGCCAGTGTCCCTATTCTACCTCGAATCCAATCCCATTACCATGTCGAAGCTTTACCACGGTGTCATCAATGTGGCCGATAAGTTTGTCCCCAACGCGTTGCGGCCCCTGTGGAACCACGCTGCTGGACCGAAAACAGTTTTCTTCTGGGCGCCCGTCTTTAAATGGGGCTTGGTCGTAGCCGGATTGAGTGACCTTCGACGTCCTGCGGATCAGCTGTCAGTTTCGCAGTCCGCTTCACTGGCGGCAACCGGAATAATTTGGTCGCGCTACTCGTTGGTGATCATTCCCAAAAATTGGGGCCTCTTCTCGGTGAACGTGTTCGTCGCCGGTACGCAAGTACTGCAACTGTATCGCGCGTGGGACTTTTCGCGCAAGGCACCGAAAACCGCTGCCTAGACGAATACGCAAGTGCGAATGCCGTACCTGCGGACTAATAACTCAATGTGAAAATCGAAGCAGTTTTTATAAAACGCTGCTATTTTTATAAACACTATTTCTGAAACTGTACAGTGCAGGTTTGATGTAAATGATATTAGAAGGTGTACAGTATAAATATATGCACAAAAGATAAAAATGATCTGTAGTAG] [+] EMBL BM579724 [ CCGGTGCGAGCGGTGCCAGTGTCCCTATTCTACCTCGAATCCAATCCCATTACCATGTCGAAGCTTTACCACGGTGTCATCAATGTGGCCGATAAGTTTGTCCCCAACGCGTTGCGGCCCCTGTGGAACCACGCTGCTGGACCGAAAACAGTTTTCTTCTGGGCGCCCGTCTTTAAATGGGGCTTGGTCGTAGCCGGATTGAGTGACCTTCGACGTCCTGCGGACCAGCTGTCAGTTTCGCAGTCCGCTTCACTGGCGGCAACCGGAATAATTTGGTCGCGCTACTCGCTGGTGATCATTCCCAAAAATTGGGGCCTCTTCTCGGTGAACGTGTTCGTCGCCGGTACGCAAGTACTGCAGCTGTATCGCGCGTGGGACTTTTCGCGCAAGGCACCGAAAACCGCTGCCTAGACGAATACGCAAGTGCGAATGCCGTACCTGCGGACTAATAACTCAATGTGAAAATCGAAGCAGTTTTTTTAAAACGCTGCTATTTTTATAAACACTATTTCTGAAACTGTACAGTGCAGGTTTGATGTAAATGATATTAGAAGGTGTACAGTATAAATATATGCACAAAAGATAAAAACGATCTGTAGTAG] [+] EMBL BM588287 [ CCGGCGA GCGGTGCCAGTGTCCCTATTCTACCTCGAATCCAATCCCATTACCATGTCGAAGCTTTACCACGGTGTCATCAATGTGGCCGATAAGTTTGTCCCCAACGCGTTGCGGCCCCTGTGGAACCACGCTGCTGGACCGAAAACAGTTTTCTTCTGGGCGCCCGTCTTTAAATGGGGCTTGGTCGTAGCCGGATTGAGTGACCTTCGACGTCCTGCGGATCAGCTGTCAGTTTCGCAGTCCGCTTCACTGGCGGCAACCGGAATAATTTGGTCGCGCTACTCGCTGGTGATCATTCCCAAAAATTGGGGCCTCTTCTCGGTGAACGTGTTCGTCGCCGGTACGCAAGTACTGCAACTGTATCGCGCGTGGGACTTTTCGCGCAAGGCACCGAAAACCGCTGCCTAGACGAATACGCAAGTGCGAATGCCGTACCTGCGGACTAATAACTCAATGTGAAAATCGAAGCAGTTTTTATAAAACGCTGCTATTTTTATAAACACTATTTCTGAAACTGTACAGTGCAGGTTTGATGTAAATGATATTAGAAGGTGTACAGTATAAATATATGCACAAAAGATAAAAACGATCTGTAGT ] [+] EMBL BM635300 [ ccgcga GCGGTGCCAGTGTCCCTATTCTACCTCGAATCCAATCCCATTACCATGTCGAAGCTTTACCACGGTGTCATCAATGTGGCCGATAAGTTTGTCCCCAACGCGTTGCGGCCCCTGTGGAACCACGCTGCTGGACCGAAAACAGTTTTCTTCTGGGCGCCCGTCTTTAAATGGGGCTTGGTCGTAGCCGGATTGAGTGACCTTCGACGTCCTGCGGATCAGCTGTCAGTTTCGCAGTCCGCTTCACTGGCGGCAACCGGAATAATTTGGTCGCGCTACTCGCTGGTGATCATTCCCAAAAATTGGGGCCTCTTCTCGGTGAACGTGTTCGTCGCCGGTACGCAAGTACTGCAACTGTATCGCGCGTGGGACTTTTCGCGCAAGGCACCGAAAACCGCTGCCTAGACGAATACGCAAGTGCGAATGCCGTACCTGCGGACTAATAACTCAATGTGAAAATCGAAGCAGTTTTTATAAAACGCTGCTATTTTTATAAACACTATTTCTGAAACTGTACAGTGCAGGTTTGATGTAAATGATATTAGAAGGTGTACAGTATAAATATATGCAC ] [+] EMBL BM600889 [ ccgCCCTATTCTACCTCGAATCCAATCCCATTACCATGTCGAAGCTTTACCACGGTGTCATCAATGTGGCCGATAAGTTTGTCCCCAACGCGTTGCGGCCCCTGTGGAACCACGCTGCTGGACCGAAAACAGTTTTCTTCTGGGCGCCCGTCTTTAAATGGGGCTTGGTCGTAGCCGGATTGAGTGACCTTCGACGTCCTGCGGATCAGCTGTCAGTTTCGCAGTCCGCTTCACTGGCGGCAACCGGAATAATTTGGTCGCGCTACTCGCTGGTGATCATTCCCAAAAATTGGGGCCTCTTCTCGGTGAACGTGTTCGTCGCCGGTACGCAAGTACTGCAACTGTATCGCGCGTGGGACTTTTCGCGCAAGGCACCGAAAACCGCTGCCTAGACGAATACGCAAGTGCGAATGCCGTACCTGCGGACTAATAACTCAATGTGAAAATCGAAGCAGTTTTTATAAAACGCTGCTATTTTTATAAACACTATTTCTGAAACTGTACAGTGCAGGTTTGATGTAAATGATATTAGAAGGTGTAC ] [+] EMBL BM633334 [ ccgttTTTTTTTTTGGGCGCCCGTCTTTAAATGGGGCTTGGTCGTAGCCGGATTGAGTGACCTTCGACGTCCTGCGGATCAGCTGTCAGTTTCGCAGTCCGCTTCACTGGCGGCAACCGGAATAATTTGGTCGCGCTACTCGCTGGTGATCATTCCCAAAAATTGGGGCCTCTTCTCGGTGAACGTGTTCGTCGCCGGTACGCAAGTACTGCAACTGTATCGCGCGTGGGACTTTTCGCGCAAGGCACCGAAAACCGCTGCCTAGACGAATACGCAAGTGCGAATGCCGTACCTGCGGACTAATAACTCAATGTGAAAATCGAAGCAGTTTTTATAAAACGCTGCTATTTTTATAAACACTATTTCTGAAACTGTACAGTGCAGGTTTGATGTAAATGATATTAGAAGGTGTACAGTATAAATATATGCAC ] consensusID : consensus_8798#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 389 fasta sequence [CCGCGGACGCGTGGGCGGACGCGTGGGCAGTCCGCTTCACTGGCGGCAACCGGAATAATTTGGTCGCGCTACTCGCTGGTGATCATTCCCAAAAATTGGGGCCTCTTCTCGGTGAACGTGTTCGTCGCCGGTACGCAAGTACTGCAACTGTATCGCGCGTGGGACTTTTCGCGCAAGGCACCGAAAACCGCTGCCTAGACGAATACGCAAGTGCGAATGCCGTACCTGCGGACTAATAACTCAATGTGAAAATCGAAGCAGTTTTTATAAAACGCTGCTATTTTTATAAACACTATTTCTGAAACTGTACAGTGCAGGTTTGATGTAAATGATATTAGAAGGTGTACAGTATAAATATATGCACAAAAGATAAAAACGATCTGTAGTAG] [+] EMBL BM629997 [CCGCGGACGCGTGGGCGGACGCGTGGGCAGTCCGCTTCACTGGCGGCAACCGGAATAATTTGGTCGCGCTACTCGCTGGTGATCATTCCCAAAAATTGGGGCCTCTTCTCGGTGAACGTGTTCGTCGCCGGTACGCAAGTACTGCAACTGTATCGCGCGTGGGACTTTTCGCGCAAGGCACCGAAAACCGCTGCCTAGACGAATACGCAAGTGCGAATGCCGTACCTGCGGACTAATAACTCAATGTGAAAATCGAAGCAGTTTTTATAAAACGCTGCTATTTTTATAAACACTATTTCTGAAACTGTACAGTGCAGGTTTGATGTAAATGATATTAGAAGGTGTACAGTATAAATATATGCACAAAAGATAAAAACGATCTGTAGTAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8798#0 GATCGCCNGAGGTGCCGGTGCGAGCGGTGCCAGTGTCCCTATTCTACCTCGAATCCAATC 60 consensus_8798#1 --CCGCCCA-----CCCGTCCG-GCGGTGCCAGTGTCCCTATTCTACCTCGAATCCAATC 52 consensus_8798#2 ------------------------------------------------------------ consensus_8798#0 CCATTACCATGTCGAAGCTTTACCACGGTGTCATCAATGTGGCCGATAAGTTTGTCCCCA 120 consensus_8798#1 CCATTACCATGTCGAAGCTTTACCACGGTGTCATCAATGTGGCCGATAAGTTTGTCCCCA 112 consensus_8798#2 ------------------------------------------------------------ consensus_8798#0 ACGCGTTGCGGCCCCTGTGGAACCACGCTGCTGGACCGAAAACAGTTTTCTTCTGGGCGC 180 consensus_8798#1 ACGCGTTGCGGCCCCTGTGGAACCACGCTGCTGGACCGAAAACAGTTTTCTTCTGGGCGC 172 consensus_8798#2 ------------------------------------------------------------ consensus_8798#0 CCGTCTTTAAATGGGGCTTGGTCGTAGCCGGATTGAGTGACCTTCGACGTCCTGCGGACC 240 consensus_8798#1 CCGTCTTTAAATGGGGCTTGGTCGTAGCCGGATTGAGTGACCTTCGACGTCCTGCGGATC 232 consensus_8798#2 -----------------------------------------------CCGCGGACGCGTG 13 * * ** consensus_8798#0 AGCTGTCAGTTTCGCAGTCCGCTTCACTGGCGGCAACCGGAATAATTTGGTCGCGCTACT 300 consensus_8798#1 AGCTGTCAGTTTCGCAGTCCGCTTCACTGGCGGCAACCGGAATAATTTGGTCGCGCTACT 292 consensus_8798#2 GGCGGACGCGTGGGCAGTCCGCTTCACTGGCGGCAACCGGAATAATTTGGTCGCGCTACT 73 ** * * * *********************************************** consensus_8798#0 CGCTGGTGATCATTCCCAAAAATTGGGGCCTCTTCTCGGTGAACGTGTTCGTCGCCGGTA 360 consensus_8798#1 CGCTGGTGATCATTCCCAAAAATTGGGGCCTCTTCTCGGTGAACGTGTTCGTCGCCGGTA 352 consensus_8798#2 CGCTGGTGATCATTCCCAAAAATTGGGGCCTCTTCTCGGTGAACGTGTTCGTCGCCGGTA 133 ************************************************************ consensus_8798#0 CGCAAGTACTGCAACTGTATCGCGCGTGGGACTTTTCGCGCAAGGCACCGAAAACCGCTG 420 consensus_8798#1 CGCAAGTACTGCAACTGTATCGCGCGTGGGACTTTTCGCGCAAGGCACCGAAAACCGCTG 412 consensus_8798#2 CGCAAGTACTGCAACTGTATCGCGCGTGGGACTTTTCGCGCAAGGCACCGAAAACCGCTG 193 ************************************************************ consensus_8798#0 CCTAGACGAATACGCAAGTGCGAATGCCGTACCTGCGGACTAATAACTCAATGTGAAAAT 480 consensus_8798#1 CCTAGACGAATACGCAAGTGCGAATGCCGTACCTGCGGACTAATAACTCAATGTGAAAAT 472 consensus_8798#2 CCTAGACGAATACGCAAGTGCGAATGCCGTACCTGCGGACTAATAACTCAATGTGAAAAT 253 ************************************************************ consensus_8798#0 CGAAGCAGTATTTATAAAACGCTGCTATTTTTATAAACACTATTTCTGAAACTGTACAGT 540 consensus_8798#1 CGAAGCAGTTTTTATAAAACGCTGCTATTTTTATAAACACTATTTCTGAAACTGTACAGT 532 consensus_8798#2 CGAAGCAGTTTTTATAAAACGCTGCTATTTTTATAAACACTATTTCTGAAACTGTACAGT 313 ********* ************************************************** consensus_8798#0 GCAGGTTTGATGTAAATGATATTAGAAGGTGTACAGTATAAATATATGCACAAAAGATAA 600 consensus_8798#1 GCAGGTTTGATGTAAATGATATTAGAAGGTGTACAGTATAAATATATGCACAAAAGATAA 592 consensus_8798#2 GCAGGTTTGATGTAAATGATATTAGAAGGTGTACAGTATAAATATATGCACAAAAGATAA 373 ************************************************************ consensus_8798#0 AAAAAAAAAAAAAAAAAAAAGGCCACATGTGCTCTTTTTT 640 consensus_8798#1 AAACGATCTGTAGTAG------------------------ 608 consensus_8798#2 AAACGATCTGTAGTAG------------------------ 389 *** * * * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||