cluster # 88

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Anopheles gambiae
cluster # 88 cluster # 88 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_88#0 length = 656 sequences # 1

consensus_88#1 length = 454 sequences # 1

consensusID : consensus_88#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 656
fasta sequence

                              [CCGATTTGAGCGTTCCCAAGAAACGCAGGCAACAGCAAAAAAACGGACCATGTTTTTTGCACCCTTCATGTGGCGAGTGCGTTTGGCTTAGTTTTCGAAAAAAAGAAAAAGCGACCCTGAAAAACAAACACACTCACCATGTCCACGGAAGCCTTGGAGACGGCTGCGCGGAACGATGCTGGCCGGGATACGCGATGTCGCCTGTGCCTGAAGCAGATCGAAATAGCACAGACGGCCGGCATCGATTTGCTGGAAAATCAGGACATCAACCGCCTACTGCTCGATGTGTACCGGGTGGAGGTACTGCAAACCGATGAGGGTCCAACGATGATCTGCGTGCCTTGCTACGTACAGCTCGTACACCACTACAAACTTCGGATACGCTGTCTGTCGCTGAGGAAAAACTTCCGGCTAAATCAGTCGGTGCTGCTCGCCCAGATCAACGCATTCCGCGCTATCGCCGGGGAGGCGCGCATTGCGAGCATCAACGAACTCGCTGAAAGTGCGCCACAATGCAGCAACGGCACGGCGGTGCAGGAGAGGGGTACCCAGACAGACGTTGTTAGTCTGCCGTCACCGGCAAAGTCCAGTGCACCAGAACCAAATACCGCACTGGTCGGTATGCCGAACCGGCCAGAACCAAATGCCGAACCGGC]

[+] EMBL BM579076             [CCGATTTGAGCGTTCCCAAGAAACGCAGGCAACAGCAAAAAAACGGACCATGTTTTTTGCACCCTTCATGTGGCGAGTGCGTTTGGCTTAGTTTTCGAAAAAAAGAAAAAGCGACCCTGAAAAACAAACACACTCACCATGTCCACGGAAGCCTTGGAGACGGCTGCGCGGAACGATGCTGGCCGGGATACGCGATGTCGCCTGTGCCTGAAGCAGATCGAAATAGCACAGACGGCCGGCATCGATTTGCTGGAAAATCAGGACATCAACCGCCTACTGCTCGATGTGTACCGGGTGGAGGTACTGCAAACCGATGAGGGTCCAACGATGATCTGCGTGCCTTGCTACGTACAGCTCGTACACCACTACAAACTTCGGATACGCTGTCTGTCGCTGAGGAAAAACTTCCGGCTAAATCAGTCGGTGCTGCTCGCCCAGATCAACGCATTCCGCGCTATCGCCGGGGAGGCGCGCATTGCGAGCATCAACGAACTCGCTGAAAGTGCGCCACAATGCAGCAACGGCACGGCGGTGCAGGAGAGGGGTACCCAGACAGACGTTGTTAGTCTGCCGTCACCGGCAAAGTCCAGTGCACCAGAACCAAATACCGCACTGGTCGGTATGCCGAACCGGCCAGAACCAAATGCCGAACCGGC]




>consensus_88#0
CCGATTTGAGCGTTCCCAAGAAACGCAGGCAACAGCAAAAAAACGGACCATGTTTTTTGC
ACCCTTCATGTGGCGAGTGCGTTTGGCTTAGTTTTCGAAAAAAAGAAAAAGCGACCCTGA
AAAACAAACACACTCACCATGTCCACGGAAGCCTTGGAGACGGCTGCGCGGAACGATGCT
GGCCGGGATACGCGATGTCGCCTGTGCCTGAAGCAGATCGAAATAGCACAGACGGCCGGC
ATCGATTTGCTGGAAAATCAGGACATCAACCGCCTACTGCTCGATGTGTACCGGGTGGAG
GTACTGCAAACCGATGAGGGTCCAACGATGATCTGCGTGCCTTGCTACGTACAGCTCGTA
CACCACTACAAACTTCGGATACGCTGTCTGTCGCTGAGGAAAAACTTCCGGCTAAATCAG
TCGGTGCTGCTCGCCCAGATCAACGCATTCCGCGCTATCGCCGGGGAGGCGCGCATTGCG
AGCATCAACGAACTCGCTGAAAGTGCGCCACAATGCAGCAACGGCACGGCGGTGCAGGAG
AGGGGTACCCAGACAGACGTTGTTAGTCTGCCGTCACCGGCAAAGTCCAGTGCACCAGAA
CCAAATACCGCACTGGTCGGTATGCCGAACCGGCCAGAACCAAATGCCGAACCGGC

consensusID : consensus_88#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 454
fasta sequence

                              [TTGACGAACGTGGTGACCATTTCGCAGGTACTGCAAACCGATGAGGGTCCAACGATGATCTGCGTGCCTTGCTACGTACAGCTCGTACACCACTACAAACTTCGGATACGCTGTCTGTCGCTGAGGAAAAACTTCCGGCTAAATCAGTCGGTGCTGCTCGCCCAGATCAACGCATTCCGCGCTATCGCCGGGGAGGCGCGCATTGCGAGCATGAACGAACTCGCTGAAAGTGCGCCACAATGCAGCAACGGCACGGCGGTGCAGGAGAGGGGTACCCAGACAGACGTTGTTAGCCTGCCGTCACCGGCAAAGTCCAGTGCACCAGAACCAAATGCCGAACCGGCCGTGGAAAAGGAATCGGCCACTATTGTTATCGACGATGAATCGAGGGAAGGATCGGTTGTGACCGTACAAAGCGAAGTAATGGCAGATCTGATGAATGCAGCTTGAAAAC]

[+] EMBL BX606921             [TTGACGAACGTGGTGACCATTTCGCAGGTACTGCAAACCGATGAGGGTCCAACGATGATCTGCGTGCCTTGCTACGTACAGCTCGTACACCACTACAAACTTCGGATACGCTGTCTGTCGCTGAGGAAAAACTTCCGGCTAAATCAGTCGGTGCTGCTCGCCCAGATCAACGCATTCCGCGCTATCGCCGGGGAGGCGCGCATTGCGAGCATGAACGAACTCGCTGAAAGTGCGCCACAATGCAGCAACGGCACGGCGGTGCAGGAGAGGGGTACCCAGACAGACGTTGTTAGCCTGCCGTCACCGGCAAAGTCCAGTGCACCAGAACCAAATGCCGAACCGGCCGTGGAAAAGGAATCGGCCACTATTGTTATCGACGATGAATCGAGGGAAGGATCGGTTGTGACCGTACAAAGCGAAGTAATGGCAGATCTGATGAATGCAGCTTGAAAAC]




>consensus_88#1
TTGACGAACGTGGTGACCATTTCGCAGGTACTGCAAACCGATGAGGGTCCAACGATGATC
TGCGTGCCTTGCTACGTACAGCTCGTACACCACTACAAACTTCGGATACGCTGTCTGTCG
CTGAGGAAAAACTTCCGGCTAAATCAGTCGGTGCTGCTCGCCCAGATCAACGCATTCCGC
GCTATCGCCGGGGAGGCGCGCATTGCGAGCATGAACGAACTCGCTGAAAGTGCGCCACAA
TGCAGCAACGGCACGGCGGTGCAGGAGAGGGGTACCCAGACAGACGTTGTTAGCCTGCCG
TCACCGGCAAAGTCCAGTGCACCAGAACCAAATGCCGAACCGGCCGTGGAAAAGGAATCG
GCCACTATTGTTATCGACGATGAATCGAGGGAAGGATCGGTTGTGACCGTACAAAGCGAA
GTAATGGCAGATCTGATGAATGCAGCTTGAAAAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_88#0      CCGATTTGAGCGTTCCCAAGAAACGCAGGCAACAGCAAAAAAACGGACCATGTTTTTTGC 60
consensus_88#1      ------------------------------------------------------------
                                                                                

consensus_88#0      ACCCTTCATGTGGCGAGTGCGTTTGGCTTAGTTTTCGAAAAAAAGAAAAAGCGACCCTGA 120
consensus_88#1      ------------------------------------------------------------
                                                                                

consensus_88#0      AAAACAAACACACTCACCATGTCCACGGAAGCCTTGGAGACGGCTGCGCGGAACGATGCT 180
consensus_88#1      ------------------------------------------------------------
                                                                                

consensus_88#0      GGCCGGGATACGCGATGTCGCCTGTGCCTGAAGCAGATCGAAATAGCACAGACGGCCGGC 240
consensus_88#1      ------------------------------------------------------------
                                                                                

consensus_88#0      ATCGATTTGCTGGAAAATCAGGACATCAACCGCCTACTGCTCGATGTGTACCGGGTGGAG 300
consensus_88#1      ---------------------------------TTGACGAACGTGGTGACCATTTCGCAG 27
                                                      *   *  **  ***  *     * **

consensus_88#0      GTACTGCAAACCGATGAGGGTCCAACGATGATCTGCGTGCCTTGCTACGTACAGCTCGTA 360
consensus_88#1      GTACTGCAAACCGATGAGGGTCCAACGATGATCTGCGTGCCTTGCTACGTACAGCTCGTA 87
                    ************************************************************

consensus_88#0      CACCACTACAAACTTCGGATACGCTGTCTGTCGCTGAGGAAAAACTTCCGGCTAAATCAG 420
consensus_88#1      CACCACTACAAACTTCGGATACGCTGTCTGTCGCTGAGGAAAAACTTCCGGCTAAATCAG 147
                    ************************************************************

consensus_88#0      TCGGTGCTGCTCGCCCAGATCAACGCATTCCGCGCTATCGCCGGGGAGGCGCGCATTGCG 480
consensus_88#1      TCGGTGCTGCTCGCCCAGATCAACGCATTCCGCGCTATCGCCGGGGAGGCGCGCATTGCG 207
                    ************************************************************

consensus_88#0      AGCATCAACGAACTCGCTGAAAGTGCGCCACAATGCAGCAACGGCACGGCGGTGCAGGAG 540
consensus_88#1      AGCATGAACGAACTCGCTGAAAGTGCGCCACAATGCAGCAACGGCACGGCGGTGCAGGAG 267
                    ***** ******************************************************

consensus_88#0      AGGGGTACCCAGACAGACGTTGTTAGTCTGCCGTCACCGGCAAAGTCCAGTGCACCAGAA 600
consensus_88#1      AGGGGTACCCAGACAGACGTTGTTAGCCTGCCGTCACCGGCAAAGTCCAGTGCACCAGAA 327
                    ************************** *********************************

consensus_88#0      CCAAATACCGCACTGGTCG-GTATGCCGAACCGGCCAGAACCA-----AATGCCGAACCG 654
consensus_88#1      CCAAATGCCGAACCGGCCGTGGAAAAGGAATCGGCCACTATTGTTATCGACGATGAATCG 387
                    ****** *** ** ** ** * *    *** ******  *         * *  *** **

consensus_88#0      GC---------------------------------------------------------- 656
consensus_88#1      AGGGAAGGATCGGTTGTGACCGTACAAAGCGAAGTAATGGCAGATCTGATGAATGCAGCT 447
                                                                                

consensus_88#0      -------
consensus_88#1      TGAAAAC 454