cluster # 8823

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Anopheles gambiae
cluster # 8823 cluster # 8823 Sequences # 12 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8823#0 length = 846 sequences # 8
consensus_8823#1 length = 449 sequences # 1

consensus_8823#2 length = 378 sequences # 2
consensus_8823#3 length = 91 sequences # 1

consensusID : consensus_8823#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 846
fasta sequence

                              [CCGCGGACGCGTGGGCACCCATTTCCCTTAGTACATTATAGCCCATGACCCTTAACTGGAGCAATTGGAGCAATAACTACTGTTTCAGGATTAGTACAATGATTTCATCAATATACTATAACATTATTTATATTAGGTAATGTTATTACTATTTTAACTATGTATCAATGATGACGAGATATTTCTCGAGAAGGAACTTTTCAAGGACTTCATACTTTTCCAGTAACTATTGGATTACGATGAGGAATAATTTTATTTATTGTATCTGAAGTA-TTTTTTTTTATTTCTTTTTTCTGAGCATTTTTCCATAGTAGTTTATCTCCTACAATTGAATTAGGAATAACATGACCTCCAGTAGGAATTGCCGCATTTAATCCCTTCCAAATTCCTCTTTTA-AATACTGCTATTTTATTAGCTTCTGGAGTAACTGTCACTTGAGCTCATCATGCTCTAATAGAAGGTAATCATTCACAAGCCACACAAGGATTATTTTTTACAATTGTATTAGGAGTATATTTTACTATTTTACAAGCTTATGAATATATTGAAGCTCCTTTTACTATTGCAGATGCTGTTTATGGATCAACTTTTTATATAGCAACAGGATTCCACGGATTACATGTACTAATTGGAACAACTTTTTTATTAATTTGCTTTTTACGTCATATTAATTATCATTTTTCTAAAAATCATCATTTTGGTTTTGAAGCTGCAGCTTGATACTGACACTTTGTAGATGTTGTATGATTATTTTGGGATCCTACAATTTATTGATGAGGTAGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGCCCAATGTGCCGGG]

[+] EMBL BM592234             [CCGCGGACGCGTGGGCACCCATTTCCCTTAGTACATTATAGCCCATGACCCTTAACTGGAGCAATTGGAGCAATAACTACTGTTTCAGGATTAGTACAATGATTTCCTCAATATACT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL BX607242             [                       TCACTTAGTAGATTATAGCCCATGACCCTTAACTGGAGCAATTGGAGCAATAACTACTGTTTCAGGATTAGTACAATGATTTCATCAATACACTATAACATTATTTATTTTAGGTAATGTTATTACTATTTTAACTATGTATCAATGATGACGAGATATTTCTCGAGAAGGAACTTTTCAAGGACTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL BX605001             [                                                   TTAACTGGAGCAATTGGAGCAATAACTACTGTTTCAGGATTAGTACAATGATTTCATCAATATACTATAACATTATTTATATTAGGTAATGTTATTACTATTTTAACTATGTATCAATGATGACGAGATATTTCTCGAGAAGGAACTTTTCAAGGACTTCATACTTTTCCAGTAACTATTGGATTACGATGAGGAATAATTTTATTTATTGTATCTGAAGTATTTTTTTTTTATTTCTTTTTTCTGAGCATTTTTCCATAGTAGTTTATCTCCTACAATTGAATTAGGAATAACATGACCTCCAGTAGGAATTGCCGCATTTAATCCCTTCCAAATTCCTCTTTTA AATACTGCTATTTTATTAGCTTCTGGAGTAACTGTCACTTGAGCTCATCATGCTCTAATAGAAGGTAATCATTCACAAGCCACACAAGGATTATTTTTTACAATTGTATTAGGAGTATATTTTACTATTTTACAAGCTTATGAATATATTGAAGCTCCTTTTACTATTGCAGATGCTGTTTATGGATCAACTTTTTATATAGCAACAGGATTCCACGGATTACATGTACTAATTGGAACAACTTTTTTATTAATTTGCTTTTTACGTCATATTAATTA                                                                                                                                                                            ]
[+] EMBL AGA282097            [                                                                   GAGCAATAACTACTGTTTCACGATTAGTACAATGATTTCATCAATATACTATAACATTATTTATATTAGGTAATGTTATTACTATTTTAACTATGTATCAATGATGACGAGATATTTCTCGAGAAGGAACTTTTCAAGGACTTCATACTTTTCCAGTAACTATTGGATTACGATGAGGAATAATTTTATTTATTGTATCTGAAGTA TTTTTTTTTATTTCTTTTTTCTGAGCATTTTTCCATAGTAGTTTATCTCCTACAATTGAATTAGGAATAACATGACCTCCAGTAGGAATTGCCGCATTTAATCCCTTCCAAATTCCTCTTTTA AATACTGCTATTTTATTAGCTTCTGGAGTAACTGTCACTTGAGCTCATCATGCTCTAATAGAAGGTAATCATTCACAAGCCACACAAGGATTATT                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL BX613627             [                                                                               CTGTTTCAGGATTAGTACAATGATTTCATCAATATACTATAACATTATTTATATTAGGTAATGTTATTACTATTTTAACTATGTATCAATGATGACGAGATATTTCTCGAGAAGGAACTTTTCAAGGACTTCATACTTTTCCAGTAACTATTGGATTACGATGAGGAATAATTTTATTTATTGTATCTGAAGTA TTTTTTTTTATTTCTTTTTTCTGAGCATTTTTCCATAGTAGTTTATCTCCTACAATTGAATTAGGAATAACATGACCTCCAGTAGGAATTGCCGCATTTAATCCCTTCCAAATTCCTCTTTTA AATACTGCTATTTTATTAGCTTCTGGAGTAACTGTCACTTGAGCTCATCATGCTCTAATAGAAGGTAATCATTCACAAGCCACACAAGGATTATTTTTTACAATTGTATTAGGAGTATATTTTACTATTTTACAAGCTTATGAATATATTGAAGCTCCTTTTACTATTGCAGATGCTGTTTATGGATCAACTTTTTATATAGCAACAGGATTCCACGGATTACATGTACTAATTGGAACAACTTTTTTATTAATTTGCTTTTTACGTCATATTAATTAT                                                                                                                                                                           ]
[+] EMBL BM628098             [                                                                                                                                                                            GACGAGATATTTCTCGAGAAGGAACTTTTCGAGGACTTCATACTTGTCCGGCAACTATTGGATTACGATGAGGAATAATTTTATTTATTGTATCTGAAGTA TTTTTTTTTATTTCTTTTTTCTGAGCATTTTTCCATAGTACTTTATCTCCTACAATTGAA TAGGAATAACATGACCTCCTGTAGGAATTGCAGCATTGAATCCCTTCCAAATTCCTCTTTTAGAATACTGCTATTTTATTAGCTTCTGGAGTAACTGTCACTTGA                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[-] EMBL AGA280396            [                                                                                                                                                                                                                                                                                                                                                                                                        TTTTA AATACTGCTATTTTATTAGCTTCTGGAGTAACTATCACTTGAGCTCATCATGCTCTAATAGAAGGTAATCATTCACAAGCCACACAAGGATTATTTTTTACAATTGTATTAGGAGTATATTTTACTATTTTACAAGCTTATGAATATATTGAAGCTCCTTTTACTATTGCAGATGCTGTTTATGGATCAACTTTTTATATAGCAACAGGATTCCACGGATTACATGTACTAATTGGAACAACTTTTTTATTAATTTGCTTTTTACGTCATATTAATTATCATTTTTCTAAAAATCATCATTTTGGTTTTGAAGCTGCAGCTTGATACTGACACTTTGTAGATGTTGTATGATTATTTTGGGATCCTACAATTTATTGATGAGGTAGCTAAAAAAAA                                                      ]
[+] EMBL CNS08XPH             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  CTAATTGGAACAACTTTTTTATTAATTTGCTTTTTACGTCATATTAATTATCATTTTTCTAAAAATCATCATTTTGGTTTTGAAGCTGCAGCTTGATACTGACACTTTGTAGATGTTGTATGATTATTTTTATATATTACAATTTATTGATGAGGTAGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGCCCAATGTGCCGGG]




>consensus_8823#0
CCGCGGACGCGTGGGCACCCATTTCCCTTAGTACATTATAGCCCATGACCCTTAACTGGA
GCAATTGGAGCAATAACTACTGTTTCAGGATTAGTACAATGATTTCATCAATATACTATA
ACATTATTTATATTAGGTAATGTTATTACTATTTTAACTATGTATCAATGATGACGAGAT
ATTTCTCGAGAAGGAACTTTTCAAGGACTTCATACTTTTCCAGTAACTATTGGATTACGA
TGAGGAATAATTTTATTTATTGTATCTGAAGTATTTTTTTTTATTTCTTTTTTCTGAGCA
TTTTTCCATAGTAGTTTATCTCCTACAATTGAATTAGGAATAACATGACCTCCAGTAGGA
ATTGCCGCATTTAATCCCTTCCAAATTCCTCTTTTAAATACTGCTATTTTATTAGCTTCT
GGAGTAACTGTCACTTGAGCTCATCATGCTCTAATAGAAGGTAATCATTCACAAGCCACA
CAAGGATTATTTTTTACAATTGTATTAGGAGTATATTTTACTATTTTACAAGCTTATGAA
TATATTGAAGCTCCTTTTACTATTGCAGATGCTGTTTATGGATCAACTTTTTATATAGCA
ACAGGATTCCACGGATTACATGTACTAATTGGAACAACTTTTTTATTAATTTGCTTTTTA
CGTCATATTAATTATCATTTTTCTAAAAATCATCATTTTGGTTTTGAAGCTGCAGCTTGA
TACTGACACTTTGTAGATGTTGTATGATTATTTTGGGATCCTACAATTTATTGATGAGGT
AGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGCCCAATGT
GCCGGG

consensusID : consensus_8823#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 449
fasta sequence

                              [ACTGTTTCAGGATTAGTACAATGATTTCATCAATATACTATAACATTATTTATTTTAGGTAATGTTATTACTATTTTAACTATGTATCAATGATGACGAGATATTTCTCGAGAAGGAACTTTTCAAGGACTTCATACTTTTCCAGTAACTATTGGATTACGATGAGGAATAATTTTATTTATTGTATTTTAAGTATTTTTTTTTATTTCTTTTTTCTGAGCATTTTTTCCCCCCCCCCCCCTGGGAGGGGGAATTAGGAATAACATGACCTCCTGTAGGAATTGCCGCATTTAATCCCTTCCAAATTCCTCTTTTAAATACTGCTATTTTATTAGCTTCTGGAGTAACTGTCACTTGAGCTCATCATGCTCTAATAGAAGGTAATCATTCACAAGCCACACAAGGATTATTTTTTACAATTGTATTAGGAGTATATTTTACTATTTTAC]

[+] EMBL BM624564             [ACTGTTTCAGGATTAGTACAATGATTTCATCAATATACTATAACATTATTTATTTTAGGTAATGTTATTACTATTTTAACTATGTATCAATGATGACGAGATATTTCTCGAGAAGGAACTTTTCAAGGACTTCATACTTTTCCAGTAACTATTGGATTACGATGAGGAATAATTTTATTTATTGTATTTTAAGTATTTTTTTTTATTTCTTTTTTCTGAGCATTTTTTCCCCCCCCCCCCCTGGGAGGGGGAATTAGGAATAACATGACCTCCTGTAGGAATTGCCGCATTTAATCCCTTCCAAATTCCTCTTTTAAATACTGCTATTTTATTAGCTTCTGGAGTAACTGTCACTTGAGCTCATCATGCTCTAATAGAAGGTAATCATTCACAAGCCACACAAGGATTATTTTTTACAATTGTATTAGGAGTATATTTTACTATTTTAC]




>consensus_8823#1
ACTGTTTCAGGATTAGTACAATGATTTCATCAATATACTATAACATTATTTATTTTAGGT
AATGTTATTACTATTTTAACTATGTATCAATGATGACGAGATATTTCTCGAGAAGGAACT
TTTCAAGGACTTCATACTTTTCCAGTAACTATTGGATTACGATGAGGAATAATTTTATTT
ATTGTATTTTAAGTATTTTTTTTTATTTCTTTTTTCTGAGCATTTTTTCCCCCCCCCCCC
CTGGGAGGGGGAATTAGGAATAACATGACCTCCTGTAGGAATTGCCGCATTTAATCCCTT
CCAAATTCCTCTTTTAAATACTGCTATTTTATTAGCTTCTGGAGTAACTGTCACTTGAGC
TCATCATGCTCTAATAGAAGGTAATCATTCACAAGCCACACAAGGATTATTTTTTACAAT
TGTATTAGGAGTATATTTTACTATTTTAC

consensusID : consensus_8823#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 378
fasta sequence

                              [CCCCGAGCACTGTTGGCCTACTGGACACAAGGATTATTTTTTACAATTTTATTAGGGGTATATTTTACTATTTTACAAGCTTATGAATATATTGAAGCCCCTTTTACTATTGCAGATGCTGTTTATGGATCAACTTTTTATATAGCAACAGGATTCCCCGGATTACATGTACTAATTGGAACAACTTTTTTATTAATTTGCTTTTTACGTCATATTAATTATCATTTTTCTAAAAATCATCATTTTGGTTTTGAAGCTGCAGCTTGATACTGACACTTTGTAGATGTTGTATGATTATTTTTATATATTACAATTTATTGATGAGGTAGATAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGGGCGG]

[-] EMBL CNS08YPD             [CCCCGAGCACTGTTGGCCTACTGGACACAAGGATTATTTTTTACAATTTTATTAGGGGTATATTTTACTATTTTACAAGCTTATGAATATATTGAAGCCCCTTTTACTATTGCAGATGCTGTTTATGGATCAACTTTTTATATAGCAACAGGATTCCCCGGATTACATGTACTAATTGGAACAACTTTTTTATTAATTTGCTTTTTACGTCATATTAATTATCATTTTTCTAAAAATCATC                                                                                                                                         ]
[+] EMBL CNS08YPC             [                                                                                                                                                                           CTAATTGGAACAACTTTTTTATTAATTTGCTTTTTACGTCATATTAATTATCATTTTTCTAAAAATCATCATTTTGGTTTTGAAGCTGCAGCTTGATACTGACACTTTGTAGATGTTGTATGATTATTTTTATATATTACAATTTATTGATGAGGTAGATAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGGGCGG]




>consensus_8823#2
CCCCGAGCACTGTTGGCCTACTGGACACAAGGATTATTTTTTACAATTTTATTAGGGGTA
TATTTTACTATTTTACAAGCTTATGAATATATTGAAGCCCCTTTTACTATTGCAGATGCT
GTTTATGGATCAACTTTTTATATAGCAACAGGATTCCCCGGATTACATGTACTAATTGGA
ACAACTTTTTTATTAATTTGCTTTTTACGTCATATTAATTATCATTTTTCTAAAAATCAT
CATTTTGGTTTTGAAGCTGCAGCTTGATACTGACACTTTGTAGATGTTGTATGATTATTT
TTATATATTACAATTTATTGATGAGGTAGATAAAAAAAAAAAAAAAAAAAAAAAAAAAGG
CCACATGTGCCCGGGCGG

consensusID : consensus_8823#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 91
fasta sequence

                              [CCGGTTTTGAAGCTGCAGCTTGATACAACATCTACAAAGTGTCAGTATCAAGCTGCAGCTTGATACTGACACTTTGTAGATGTTGTATGAT]

[+] EMBL BM647984             [CCGGTTTTGAAGCTGCAGCTTGATACAACATCTACAAAGTGTCAGTATCAAGCTGCAGCTTGATACTGACACTTTGTAGATGTTGTATGAT]




>consensus_8823#3
CCGGTTTTGAAGCTGCAGCTTGATACAACATCTACAAAGTGTCAGTATCAAGCTGCAGCT
TGATACTGACACTTTGTAGATGTTGTATGAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8823#2      ------------------------------------------------------------
consensus_8823#3      ------------------------------------------------------------
consensus_8823#0      CCGCGGACGCGTGGGCACCCATTTCCCTTAGTACATTATAGCCCATGACCCTTAACTGGA 60
consensus_8823#1      ------------------------------------------------------------
                                                                                  

consensus_8823#2      -------------------------------------------------------CCCCG 5
consensus_8823#3      ------------------------------------------------------------
consensus_8823#0      GCAATTGGAGCAATAACTACTGTTTCAGGATTAGTACAATGATTTCATCAATATACTATA 120
consensus_8823#1      ------------------ACTGTTTCAGGATTAGTACAATGATTTCATCAATATACTATA 42
                                                                                  

consensus_8823#2      AGCACTGTTGGCCTACTGGACACAAGGATTATTTT--TTACAATTTTATTAGGGGTATAT 63
consensus_8823#3      ------------------------------------------------------------
consensus_8823#0      ACATTATTTATATTAGGTAATGTTATTACTATTTTAACTATGTATCAATGATGACGAGAT 180
consensus_8823#1      ACATTATTTATTTTAGGTAATGTTATTACTATTTTAACTATGTATCAATGATGACGAGAT 102
                                                                                  

consensus_8823#2      TTTACTATTTTACAAGCTTATGAATATATTGAAGCCCCTTTTACTATTGCAGATGCTGTT 123
consensus_8823#3      ------------------------------------------------------------
consensus_8823#0      ATTTCTCGAGAAGGAACTTTTCAAGGACTTCATACTTTTCCAGTAACTATTGGATTACGA 240
consensus_8823#1      ATTTCTCGAGAAGGAACTTTTCAAGGACTTCATACTTTTCCAGTAACTATTGGATTACGA 162
                                                                                  

consensus_8823#2      TATGGATCAACTTTTTATATAGCAACAGGATTCCCCGGATTACATGTACTAATTGGAACA 183
consensus_8823#3      ------------------------------------------------------------
consensus_8823#0      TGAGGAATAATTTTATTTATTGTATCTGAAGTATTTTTTTTTATTTCTTTTTTCTGAGCA 300
consensus_8823#1      TGAGGAATAATTTTATTTATTGTATTTTAAGTATTTTTTTTTATTTCTTTTTTCTGAGCA 222
                                                                                  

consensus_8823#2      ACTTTTTTATTAATTTGCTTTTTACGTCA-----TATTAATTATCATTTTTC---TAAAA 235
consensus_8823#3      --------------CCGGTTTTGAAGCTG-----CAGCT-TGATACAACATC---TACAA 37
consensus_8823#0      TTTTTCCATAGTAGTTTATCTCCTACAATTGAATTAGGAATAACATGACCTCCAGTAGGA 360
consensus_8823#1      TTTTTTCCCCCC--CCCCCCCTGGGAGGGGGAATTAGGAATAACATGACCTCCTGTAGGA 280
                                                         *    * *       **   **  *

consensus_8823#2      ATCATCA----TTTTGGTTTTGAAGCTGCAGCTT--GATACTGACACTTTGT-AGATGTT 288
consensus_8823#3      AGTGTCA----GTATC------AAGCTGCAGCTT--GATACTGACACTTTGT-AGATGTT 84
consensus_8823#0      ATTGCCGCATTTAATCCCTTCCAAATTCCTCTTTTAAATACTGCTATTTTATTAGCTTCT 420
consensus_8823#1      ATTGCCGCATTTAATCCCTTCCAAATTCCTCTTTTAAATACTGCTATTTTATTAGCTTCT 340
                      *    *        *       **  * *   **   ******  * *** * ** *  *

consensus_8823#2      GTA-TGATTATTTTTATATATTACAATTTATTGATGAGGTAGATAAAAAAAAAAAAAAAA 347
consensus_8823#3      GTA-TGAT---------------------------------------------------- 91
consensus_8823#0      GGAGTAACTGTCACTTGAGCTCATCATGCTCTAATAGAAGGTAATCATTCACAAGCCACA 480
consensus_8823#1      GGAGTAACTGTCACTTGAGCTCATCATGCTCTAATAGAAGGTAATCATTCACAAGCCACA 400
                      * * * *                                                     

consensus_8823#2      AAAAAAAAAAAGGCCACATGTGCCCGGGCGG----------------------------- 378
consensus_8823#3      ------------------------------------------------------------
consensus_8823#0      CAAGGATTATTTTTTACAATTGTATTAGGAGTATATTTTACTATTTTACAAGCTTATGAA 540
consensus_8823#1      CAAGGATTATTTTTTACAATTGTATTAGGAGTATATTTTACTATTTTAC----------- 449
                                                                                  

consensus_8823#2      ------------------------------------------------------------
consensus_8823#3      ------------------------------------------------------------
consensus_8823#0      TATATTGAAGCTCCTTTTACTATTGCAGATGCTGTTTATGGATCAACTTTTTATATAGCA 600
consensus_8823#1      ------------------------------------------------------------
                                                                                  

consensus_8823#2      ------------------------------------------------------------
consensus_8823#3      ------------------------------------------------------------
consensus_8823#0      ACAGGATTCCACGGATTACATGTACTAATTGGAACAACTTTTTTATTAATTTGCTTTTTA 660
consensus_8823#1      ------------------------------------------------------------
                                                                                  

consensus_8823#2      ------------------------------------------------------------
consensus_8823#3      ------------------------------------------------------------
consensus_8823#0      CGTCATATTAATTATCATTTTTCTAAAAATCATCATTTTGGTTTTGAAGCTGCAGCTTGA 720
consensus_8823#1      ------------------------------------------------------------
                                                                                  

consensus_8823#2      ------------------------------------------------------------
consensus_8823#3      ------------------------------------------------------------
consensus_8823#0      TACTGACACTTTGTAGATGTTGTATGATTATTTTGGGATCCTACAATTTATTGATGAGGT 780
consensus_8823#1      ------------------------------------------------------------
                                                                                  

consensus_8823#2      ------------------------------------------------------------
consensus_8823#3      ------------------------------------------------------------
consensus_8823#0      AGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGCCCAATGT 840
consensus_8823#1      ------------------------------------------------------------
                                                                                  

consensus_8823#2      ------
consensus_8823#3      ------
consensus_8823#0      GCCGGG 846
consensus_8823#1      ------