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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8828#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 940 fasta sequence
[CGCCCGAGGTTT-GTTTACTTCCGGGAGTCGCGTTACGAAACAAAGCATTCGGAATGTTAAAGTTGGGGAATTTGTTGAAAATAACCGGTCTTAATGGGTTCGTTCGGTTCAACTCTTACCCGGCCGTTGCCACCGCAGCACAAGCCGAATGGCGA-CCGTCCCGGGCAGTGTGGTTGGAAAACATGGACACGGTAGAACCGGCTCATTCGGGAATCGTGGAACTGGACAATGCAGTATTCGGTGCATCGCCGCGAATTGATATCGTGCATCAGAACATCGAATGGCAGAGGAAGTATCGATTCGTTAGCTTTGCACACACCAAAACTAGAAATGAAGTGCGTGGTGGCGGGAGGAAACCGTGGCCTCAAAAGGGTCTGGGAAGGGCTCGCCACGGTTCAATCAGAT-CCCCGCTG-TG-GA-GAGGCGGTGGTATCGCACACGGTCCAAGATCGCCGACCACACACTTCTACATGCTGCCCTTCTTCAATCGAGTCTTGGGACTAGTCTCCACGCTGTCGATAAAGCTGGCTCAGGATGATTTGCACGTAGTGAAAAATTTGGAAA-TTCCAACGGACGACCCACAGTACCTGCAGGATTTGGTTGCAGCACGGCAGTGGGGGGCCTTCGGTGTTGTTCGTAGACGCGACC-GATGTTCTGTCCCGAAATATATCAATCAGTGCGGAGAACATTGACCACATCAACTTGATGCCGACGTACGGCTTGAACGTGTACTCGATGCTGAAACACAACACCGTCG-TCTTAACCGAAGATGCGGTTCGAAGCGTTGAGAGCAAATTGCTGGAGCACC-TGAATCGCAACGATGCGCGTGCACAAATGTGCAAATTTAAGTATGACAAATAAAGCTCCCAAACCAGTGCATAGCAATTAATAATCATAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCTCGGGGGG]
[+] EMBL AL931747 [CGCCCGAGGTTTAGTTTACTTCCGGGAGTCGCGTTACGAAACAAAGCATTCGGAATGTTAAAGTTGGGGAATTTGTTGAAAATAACCGGTCTTAATGGGTTCGTTCGCTTCAACTCTTACCCGGCCGTTGCCACCGCAGCACAAGCCGAATGGCGA CCGTCCCGGGCAGTGTGGTTGGAAAACATGGACACGGTAGAACCGGCTCATTCGGGAATCGTGGAACTGGACAATGCAGTATTCGGTGCATCACCGCGAATTGATATCGTGCATCAGAACATCGAATGGCAGAGGAAGTATCGATTCGTTAGCTTTGCACACACCAAAACTAGAAATGAAGTGCGTGGTGGCGGAAGGAAACCGTGGCCTCAAAAGGGTCTGGGAAGGGCTCGCCACGGTTCAATCAGAT CCCCGCTGCTG GACGGGGCGGTGGTATTGCACACGGTCCAAGATCGCCGACCACACACTTCTACATGCTGCCCTTCTTCAATCGAGTCTTGGGACT ]
[+] EMBL BM626090 [ ccGGTTT GTTTACTTCCGGGAGTCGCGTTACGAAACAAAGCATTCGGAATGTTAAAGTTGGGGAATTTGTTGAAAATAACCGGTCTTAATGGGTTCGTTCGGTTCAACTCTTACCCGGCCGTTGCCACCGCAGCACAAGCCGAATGGCGA CCGTCCCGGGCAGTGTGGTTGGAAAACATGGACACGGTAGAACCGGCTCATTCGGGAATCGTGGAACTGGACAATGCAGTATTCGGTGCATCGCCGCGAATTGATATCGTGCATCAGAACATCGAATGGCAGAGGAAGTATCGATTCGTTAGCTTTGCACACACCAAAACTAGAAATGAAGTGCGTGGTGGCGGGAGGAAACCGTGGCCTCAAAAGGGTCTGGGAAGGGCTCGCCACGGTTCAATCAGAT CCCCGCTG TG GA GAGGCGGTGGTATCGCACACGGTCCAAGATCGCCGACCACACACTTCTACATGCTGCCCTTCTTCAATCGAGTCTTGGGACTAGTCTCCACGCTGTCGATAAAGCTGGCTCAGGATGATTTGCACGTAGTG AAAATTTGGAAATTTCCAACGGACGACCCAC ]
[+] EMBL BM592981 [ ccgGTCGCGTTACGAAACAAAGCATTCGGAATGTTAAAGTTGGGGAATTTGTTGAAAATAACCGGTCTTAATGGGTTCGTTCGGTTCAACTCTTACCCGGCCGTTGCCACCGCAGCACAAGCCGAATGGCGA CCGTCCCGGGCAGTGTGGTTGGAAAACATGGACACGGTAGAACCGGCTCATTCGGGAATCGTGGAACTGGACAATGCAGTATTCGGTGCATCGCCGCGAATTGATATCGTGCATCAGAACATCGAATGGCAGAGGAAGTATCGATTCGTTAGCTTTGCACACACCAAAACTAGAAATGAAGTGCGTGGTGGCGGGAGAAAACCATGGCCTCAAAAGGGTCTGGGAAGGGCTCGCCACGGTTCAATCAGAT CCCCGCTG TG GA GGGGCGGTGGTATCGCACACGGTCCAAGATCGCCGACCACACACTTCTACATGCTGCCCTTCTTCAATCGAGTCTTGGGACTAGTCTCCACGCTGTCGATAAAGCTGACTCAGGATGATTTGCACGTAGTGAAAAATTTGGAAA TTCCAACGGACGACCCACAGTACCTGCAGGATTTGGTTGCAGCACGGCAGTGGGGGGCCTTCGGTGTTGTTTGTAGACGCGACC GATGTTATTTCCCGAAATATATCAATCAGTGCGGAGAACATT ]
[+] EMBL CNS09DJR [ ATGTTAAAGTTGGGGAATTTGTTGAAAATAACCGGTCTTAATGGGTTCGTTCGGTTCAACTCTTACCCGGCCGTTGCCACCGCAGCACAAGCCGAATGG GACCCGTCCCGGGCAGTGTGGTTGGAAAACATGGACACGGTAGAACCGGCTCATTCGGGAATCGTGGAACTGGACAATGCAGTATTCGGTGCATCGCCGCGAATTGATATCGTGCATCAGAACATCGAATGGCAGAGGAAGTATCGATTCGTTAGCTTTGCGCACACCAAAACTAGAAATGAAGTGCGTGGTGGCGGGAGGAAACCGTGGCCTCAAAAGGGTCTGGGAAGGGCTCGCCACGGTTCAATCAGAT CCCCGCTG TGTTA GAGGCGGTGGTATCGCACACGGTCCAAGATCGCCGACCACACACTTCTACATGCTGCCCTTCTTCAATCGAGT ]
[+] EMBL BX608323 [ ACCCGGCCGTTGCCACCGCATCACAAGCCGAAGGGCGA CCGTCCCGGGCAGTGTGGTTGGAAAACATGGACACGGTAGAACCGGCTCATTCGGGAATCGTGGAACTGGACAATGCAGTATTCGGTGCATCGCCGCGAATTGATATCGTGCATCAGAACATCGAAGGGCAGAGGAAGTATCGATTCGTTAGCTTGGCACACACCAAAACTAGAAATGAAGTGCGTGTGGGCGGGAGGAAACCGTGGCCTCAAAAGGGTCTGGGAAGGGCTCGCCACGGTCCAATCAGAA CCCCGCTG TG GA GAGGCGGTGGTATCGCACACGGTCCAAGAACGCCGACCACACACTACTACATGCTGCCCTACTCCAATCGAGTCTGGGGACTAGTCTCCACGCTGTCGATAAAGCTGGCTCATGATGATACGCACGTAGTGAAAAATGAGGAAA TACCAACGGACGACCCAC ]
[+] EMBL AGA282339 [ GCCACCGCAGCACAAGCCGAATGGCGA CCGTCCCGGGCAGTGTGGTTGGAAAACATGGACACGGTAGAACCGGCTCATTCGGGAATCGTGGAACTGGACAATGCAGTATTCGGTGCATCGCCGCGAATTGATATCGTGCATCAGAACATCGAATGGCAGAGGAAGTATCGATTCGTTAGCTTTGCACACACCAAAACTAGAAATGAAGTGCGTGGTGGCGGGAGGAAACCGTGGCCTCAAAAGGGTCTGGGAAGGGCTCGCCACGGTTCAATCAGAT CCCCGCTG TG GA GAGGCGGTGGTATCGCACACGGTCCAAGATCGCCGACCACACACTTCTACATGCTGCCCTTCTTCAATCGAGT ]
[-] EMBL CNS09DJS [ CCACGGTTCAATCAGATCCCCCGCTG TG GA GAGGCGGTGGTATCGCACACGGTCCAAGATCGCCGACCACACACTTCTACATGCTGCCCTTCTTCAATCGAGTCTTGGAACTAGTCTCCACGCTGTCGATAAAGCTGGCTCAGGATGATTTGCACGTAGTGAAAAATTTGGAAA TTCCAACGGACGACCCACAGTACCTGCAGGATTTGGTTGCAGCACGGCAGTGGGGG CTTCGGTGTTGTTCGTAGACGCGACC GATGTTCTGTCCCGAAATATATCAATCAGTGCGGAGAACATTGACCACATCAACTTGATGCCGACGTACGGCTTGAACGTGTACTCGATGCTGAAACACAACACCGTCGTTCTTAACCGAAGATGCGGTTCGAAGCGTTGAGAGCAAATTGCTGGAGCACCGTGAATCGCAACGATGCGCG ]
[-] EMBL AGA280719 [ GCTGCCCTTCTTCAATCGAGTCTTGGGACTAGTCTCCACGCTGTCGATAAAGCTGGCTCAGGATGATTTGCACGTAGTGAAAAATTTGGAAA TTCCAACGGACGACCCACAGTACCTGCAGGATTTGGTTGCAGCACGGCAGT GGGGGCCTTCGGTGTTGTTCGTAGACGCGACC GATGTTCTGTCCCGAAATATATCAATCAGTGCGGAGAACATTGACCACATCAACTTGATGCCGACGTACGGCTTGAACGTGTACTCGATGCTGAAACACAACACCGTCG TCTTAACCGAAGATGCGGTTCGAAGCGTTGAGAGCAAATTGCTGGAGCACC TGAATCGCAACGATGCGCGTGCACAAATGTGCAAATTTAAGTATGACAAATAAAGCTCCCAAACCAGTGCATAGCAATTAATAATCATAAAAAA ]
[+] EMBL CNS08EEW [ AAGCTGGCTCAGGATGATTTGCACGTAGAAAAAAATTTGGAAA TTCCAACGGACGACCCACAGTACCTGCAGGATTTGGTTGCAGCACGGCAGTGGGGGGCCTTCGGTGTTGTTCGTAGACGCGACCGGATGTTCTGTCCCGAAATATATCAATCAGTGCGGAGAACATTGACCACATCAACTTGATGCCGACGTACGGCTTGAACGTGTACTCGATGCTGAAACACAACACCGTCG TCTTAACCGAAGATGCGGTTCGAAGCGTTGAGAGCAAATTGCTGGAGCACC TGAATCGCAACGATGCGCGTGCACAAATGTGCAAATTTAAGTATGACAAATAAAGCTCCCAAACCAGTGCATAGCAATTAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCTCGGGGGG]
consensusID : consensus_8828#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 556 fasta sequence
[CCGCGGACGCGTGGGTTACGAAACAAAGCATTCGGAATGTTAAAGTTGGGGAATTTGTTGAAAATAACCGGTCTTAATGGGTTCGTTCGGTTCAACTCTTACCCGGCCGTTGCCACCGCAGCACAAGCCGAATGGCGACCGTCCCGGGCAGTGTGGTTGGAAAACATGGACACGGTAGAACCGGCTCATTCGGGAATCGTGGAACTGGACAATGCAGTATTCGGTGCATCGCCGCGAATTGATATCGTGCATCAGAACATCGAATGGCAGAGGAAGTATCGATTCGTTAGCTTTGCACACACCAAAACTAGAAATGAAGTGCGTGGTGGCGGGAGAAAACCATGGCCTCAAAAGGGTCTGGGAAGGGCTCGCCACGGTTCAATCAGATCCCCGCTGTGGAGGGGCGGTGGTATCGCACACGGTCCAAGATCGCCGACCACACACTTCTACATGCTGCCCTTCTTCAATCGAGTCTTGGGACTAGTCTCCACGCTGTCGATAAAGCTGACTCAGGATGATTTGCACGTAGTGAAAATTTGGAAATTCCAACGGACGA]
[+] EMBL BM601774 [CCGCGGACGCGTGGGTTACGAAACAAAGCATTCGGAATGTTAAAGTTGGGGAATTTGTTGAAAATAACCGGTCTTAATGGGTTCGTTCGGTTCAACTCTTACCCGGCCGTTGCCACCGCAGCACAAGCCGAATGGCGACCGTCCCGGGCAGTGTGGTTGGAAAACATGGACACGGTAGAACCGGCTCATTCGGGAATCGTGGAACTGGACAATGCAGTATTCGGTGCATCGCCGCGAATTGATATCGTGCATCAGAACATCGAATGGCAGAGGAAGTATCGATTCGTTAGCTTTGCACACACCAAAACTAGAAATGAAGTGCGTGGTGGCGGGAGAAAACCATGGCCTCAAAAGGGTCTGGGAAGGGCTCGCCACGGTTCAATCAGATCCCCGCTGTGGAGGGGCGGTGGTATCGCACACGGTCCAAGATCGCCGACCACACACTTCTACATGCTGCCCTTCTTCAATCGAGTCTTGGGACTAGTCTCCACGCTGTCGATAAAGCTGACTCAGGATGATTTGCACGTAGTGAAAATTTGGAAATTCCAACGGACGA]
[+] EMBL BM634935 [ TTTGTTGAAAATAACCGGTCTTAATGGGTTCGTTCGGTTCAACTCTTACCCGGCCGTTGCCACCGCAGCACAAGCCGAATGGCGACCGTCCCGGGCAGTGTGGTTGGAAAACATGGACACGGTAGAACCGGCTCATTCGGGAATCGTGGAACTGGACAATGCAGTATTCGGTGCATCGCCGCGAATTGATATCGTGCATCAGAACATCGAATGGCAGAGGAAGTATCGATTCGTTAGCTTTGCACACACCAAAACTAGAAATGAAGTGCGTGGTGGCGGGAGAAA ]
consensusID : consensus_8828#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 413 fasta sequence
[GATCGCCAGGANTAACATCGGAATGTTAAGTTGGGGAATTGTTGAAATACCGGTCTTAATGGGTCGTTCGGTTCACTCTTACCGGCGTTGCANCGGAGCACAAGCCGAATGGCGACCGTCCCCGGGCAGTGTGGTTGGAAAACATTGACACGGGTAGAACCGGGCTCATTCGGGAATCGTGGAACTGGACAATGCAGTATTCGGTGCATCGCCGCGAATTGATATCGTGCATCAGAACATCGAATGGCAGAGGAAGTATCGATTCGTTAGCTTTGCACACACCAAAACTAGAAATTGNAGTGCGTGGTGGGCGGGNAGGAAAAACCGGTTGGGCCTTCAAAAAGGGGTCCTTGGGGGAAAGGGGGCTTCCGGCCAACGGGTTCCNAATTCCAAGGAATTTCCCCGGCCTTTGT]
[+] EMBL AL933635 [GATCGCCAGGANTAACATCGGAATGTTAAGTTGGGGAATTGTTGAAATACCGGTCTTAATGGGTCGTTCGGTTCACTCTTACCGGCGTTGCANCGGAGCACAAGCCGAATGGCGACCGTCCCCGGGCAGTGTGGTTGGAAAACATTGACACGGGTAGAACCGGGCTCATTCGGGAATCGTGGAACTGGACAATGCAGTATTCGGTGCATCGCCGCGAATTGATATCGTGCATCAGAACATCGAATGGCAGAGGAAGTATCGATTCGTTAGCTTTGCACACACCAAAACTAGAAATTGNAGTGCGTGGTGGGCGGGNAGGAAAAACCGGTTGGGCCTTCAAAAAGGGGTCCTTGGGGGAAAGGGGGCTTCCGGCCAACGGGTTCCNAATTCCAAGGAATTTCCCCGGCCTTTGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8828#0 CGCCCGAGGTTTGTTTACTTCCGGGAGTCGCGTTACGAAACAAAGCATTCGGAATGTTAA 60
consensus_8828#1 -----------------CCGCGGACGCGTGGGTTACGAAACAAAGCATTCGGAATGTTAA 43
consensus_8828#2 ------------------------------GATCGCCAGGANTAACAT-CGGAATGTTAA 29
* * * * *** ***********
consensus_8828#0 AGTTGGGGAATTTGTTGAAAATAACCGGTCTTAATGGGTTCGTTCGGTTCAACTCTTACC 120
consensus_8828#1 AGTTGGGGAATTTGTTGAAAATAACCGGTCTTAATGGGTTCGTTCGGTTCAACTCTTACC 103
consensus_8828#2 -GTTGGGGAATT-GTTGAAAT--ACCGGTCTTAATGGGT-CGTTCGGTTCA-CTCTTACC 83
*********** ******* **************** *********** ********
consensus_8828#0 CGGCCGTTGCCACCGCAGCACAAGCCGAATGGCGACCGTCCC-GGGCAGTGTGGTTGGAA 179
consensus_8828#1 CGGCCGTTGCCACCGCAGCACAAGCCGAATGGCGACCGTCCC-GGGCAGTGTGGTTGGAA 162
consensus_8828#2 GG--CGTTGC-ANCGGAGCACAAGCCGAATGGCGACCGTCCCCGGGCAGTGTGGTTGGAA 140
* ****** * ** ************************** *****************
consensus_8828#0 AACATGGACACGG-TAGAACCGG-CTCATTCGGGAATCGTGGAACTGGACAATGCAGTAT 237
consensus_8828#1 AACATGGACACGG-TAGAACCGG-CTCATTCGGGAATCGTGGAACTGGACAATGCAGTAT 220
consensus_8828#2 AACATTGACACGGGTAGAACCGGGCTCATTCGGGAATCGTGGAACTGGACAATGCAGTAT 200
***** ******* ********* ************************************
consensus_8828#0 TCGGTGCATCGCCGCGAATTGATATCGTGCATCAGAACATCGAATGGCAGAGGAAGTATC 297
consensus_8828#1 TCGGTGCATCGCCGCGAATTGATATCGTGCATCAGAACATCGAATGGCAGAGGAAGTATC 280
consensus_8828#2 TCGGTGCATCGCCGCGAATTGATATCGTGCATCAGAACATCGAATGGCAGAGGAAGTATC 260
************************************************************
consensus_8828#0 GATTCGTTAGCTTTGCACACACCAAAACTAGAAAT-GAAGTGCGTGGTGG-CGGGAGGAA 355
consensus_8828#1 GATTCGTTAGCTTTGCACACACCAAAACTAGAAAT-GAAGTGCGTGGTGG-CGGGAGAAA 338
consensus_8828#2 GATTCGTTAGCTTTGCACACACCAAAACTAGAAATTGNAGTGCGTGGTGGGCGGGNAGGA 320
*********************************** * ************ **** *
consensus_8828#0 ACCGTGGCCTCAAAAGGGTCTGGGAAGGGCTCGCCACGGTTCAATCAGATCCCCGCTGTG 415
consensus_8828#1 ACCATGGCCTCAAAAGGGTCTGGGAAGGGCTCGCCACGGTTCAATCAGATCCCCGCTGTG 398
consensus_8828#2 AAAACCGGTT---GGGCCTTCAAAAAGGGGTCCTTGGGGGAAAGGGGGCTTCCGGCC--A 375
* * * * * ***** ** ** * * * ** **
consensus_8828#0 GAGAGGCGGTGGTATCGCACACGGTCCAAGATCGCCGACCACACACTTCTACATGCTGCC 475
consensus_8828#1 GAGGGGCGGTGGTATCGCACACGGTCCAAGATCGCCGACCACACACTTCTACATGCTGCC 458
consensus_8828#2 ACGGGTTCCNAATTCCAAGGAATTTCCCCGGCCTTTGT---------------------- 413
* * * * * *** * * *
consensus_8828#0 CTTCTTCAATCGAGTCTTGGGACTAGTCTCCACGCTGTCGATAAAGCTGGCTCAGGATGA 535
consensus_8828#1 CTTCTTCAATCGAGTCTTGGGACTAGTCTCCACGCTGTCGATAAAGCTGACTCAGGATGA 518
consensus_8828#2 ------------------------------------------------------------
consensus_8828#0 TTTGCACGTAGTGAAAAATTTGGAAATTCCAACGGACGACCCACAGTACCTGCAGGATTT 595
consensus_8828#1 TTTGCACGTAGTGAAAA-TTTGGAAATTCCAACGGACGA--------------------- 556
consensus_8828#2 ------------------------------------------------------------
consensus_8828#0 GGTTGCAGCACGGCAGTGGGGGGCCTTCGGTGTTGTTCGTAGACGCGACCGATGTTCTGT 655
consensus_8828#1 ------------------------------------------------------------
consensus_8828#2 ------------------------------------------------------------
consensus_8828#0 CCCGAAATATATCAATCAGTGCGGAGAACATTGACCACATCAACTTGATGCCGACGTACG 715
consensus_8828#1 ------------------------------------------------------------
consensus_8828#2 ------------------------------------------------------------
consensus_8828#0 GCTTGAACGTGTACTCGATGCTGAAACACAACACCGTCGTCTTAACCGAAGATGCGGTTC 775
consensus_8828#1 ------------------------------------------------------------
consensus_8828#2 ------------------------------------------------------------
consensus_8828#0 GAAGCGTTGAGAGCAAATTGCTGGAGCACCTGAATCGCAACGATGCGCGTGCACAAATGT 835
consensus_8828#1 ------------------------------------------------------------
consensus_8828#2 ------------------------------------------------------------
consensus_8828#0 GCAAATTTAAGTATGACAAATAAAGCTCCCAAACCAGTGCATAGCAATTAATAATCATAA 895
consensus_8828#1 ------------------------------------------------------------
consensus_8828#2 ------------------------------------------------------------
consensus_8828#0 AAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCTCGGGGGG 940
consensus_8828#1 ---------------------------------------------
consensus_8828#2 ---------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||