cluster # 886

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Anopheles gambiae
cluster # 886 cluster # 886 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_886#0 length = 524 sequences # 1

consensus_886#1 length = 307 sequences # 1

consensusID : consensus_886#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 524
fasta sequence

                              [TTTTTTTTTGTGAAATTATTGATCAATATTGATCGGAATGAATTTTTATTAAACCTTACCGCATCTATATTATGTTCACTGTAATATAAGTTCCATAAGTACTACGTTTTGAGAAATTCCCCCCACTTACATAAAGATAGGCTTATCGATAAACTGCACGTACGGATGCTGGATGTGCTGCTGGTACTCGATCATGACGATCTGGTTGTTTCCCTTCTTAAGAATGTGTCTCGGCACGTAGAGCGTAATCTGCGGTCCAGCTAATGGCCAGTAGCGGCCCAGGTTGAAGCCATTGATAAACACCAACCCCTTGCCCCACACGCTCGGGTACAGGTAGGTGTCGTAGATGGTGTCGCTGCTGATCGTGAACGTGCCGTAGTACACCTGTGCTCCCGCCCCATCCAGATCTTCCTGCTCGGTGGGCTGTTGGGTTAAGAAGTTCTCCAGATAGCGATAGCTGTCCAGCGGGAACGAGGTGATGGTCCAGTTGTACAGTGGTTTCGCATCCACTGTCACTGTCCCGA]

[+] EMBL AGA281636            [TTTTTTTTTGTGAAATTATTGATCAATATTGATCGGAATGAATTTTTATTAAACCTTACCGCATCTATATTATGTTCACTGTAATATAAGTTCCATAAGTACTACGTTTTGAGAAATTCCCCCCACTTACATAAAGATAGGCTTATCGATAAACTGCACGTACGGATGCTGGATGTGCTGCTGGTACTCGATCATGACGATCTGGTTGTTTCCCTTCTTAAGAATGTGTCTCGGCACGTAGAGCGTAATCTGCGGTCCAGCTAATGGCCAGTAGCGGCCCAGGTTGAAGCCATTGATAAACACCAACCCCTTGCCCCACACGCTCGGGTACAGGTAGGTGTCGTAGATGGTGTCGCTGCTGATCGTGAACGTGCCGTAGTACACCTGTGCTCCCGCCCCATCCAGATCTTCCTGCTCGGTGGGCTGTTGGGTTAAGAAGTTCTCCAGATAGCGATAGCTGTCCAGCGGGAACGAGGTGATGGTCCAGTTGTACAGTGGTTTCGCATCCACTGTCACTGTCCCGA]




>consensus_886#0
TTTTTTTTTGTGAAATTATTGATCAATATTGATCGGAATGAATTTTTATTAAACCTTACC
GCATCTATATTATGTTCACTGTAATATAAGTTCCATAAGTACTACGTTTTGAGAAATTCC
CCCCACTTACATAAAGATAGGCTTATCGATAAACTGCACGTACGGATGCTGGATGTGCTG
CTGGTACTCGATCATGACGATCTGGTTGTTTCCCTTCTTAAGAATGTGTCTCGGCACGTA
GAGCGTAATCTGCGGTCCAGCTAATGGCCAGTAGCGGCCCAGGTTGAAGCCATTGATAAA
CACCAACCCCTTGCCCCACACGCTCGGGTACAGGTAGGTGTCGTAGATGGTGTCGCTGCT
GATCGTGAACGTGCCGTAGTACACCTGTGCTCCCGCCCCATCCAGATCTTCCTGCTCGGT
GGGCTGTTGGGTTAAGAAGTTCTCCAGATAGCGATAGCTGTCCAGCGGGAACGAGGTGAT
GGTCCAGTTGTACAGTGGTTTCGCATCCACTGTCACTGTCCCGA

consensusID : consensus_886#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 307
fasta sequence

                              [GAAATTATTGATCAATATTGATCGGAATGAATTTTTATTAAACCTTACCGCATCTATATTATGTTCACTGTAATATAAGTTCCATAAGTACTACGTTTTGAGAAATTCCCCCCACTTACATAAAGATAGGCTTATCGATAAACTGCACGTACGGATGCTGGATGTGCTGCTGGTACTCGATCATGACGATCTGGTTGTTTCCCTTCTTAAGAATGTGTCTCGGCACGTAGAGCGTAATCTGCGGTCCAGCTAATGGCCAGTAGCGGCCCAGGTTGAAGCCATTGATAAACACCGGACGCGTGGGCGG]

[-] EMBL BM591428             [GAAATTATTGATCAATATTGATCGGAATGAATTTTTATTAAACCTTACCGCATCTATATTATGTTCACTGTAATATAAGTTCCATAAGTACTACGTTTTGAGAAATTCCCCCCACTTACATAAAGATAGGCTTATCGATAAACTGCACGTACGGATGCTGGATGTGCTGCTGGTACTCGATCATGACGATCTGGTTGTTTCCCTTCTTAAGAATGTGTCTCGGCACGTAGAGCGTAATCTGCGGTCCAGCTAATGGCCAGTAGCGGCCCAGGTTGAAGCCATTGATAAACACCGGACGCGTGGGCGG]




>consensus_886#1
GAAATTATTGATCAATATTGATCGGAATGAATTTTTATTAAACCTTACCGCATCTATATT
ATGTTCACTGTAATATAAGTTCCATAAGTACTACGTTTTGAGAAATTCCCCCCACTTACA
TAAAGATAGGCTTATCGATAAACTGCACGTACGGATGCTGGATGTGCTGCTGGTACTCGA
TCATGACGATCTGGTTGTTTCCCTTCTTAAGAATGTGTCTCGGCACGTAGAGCGTAATCT
GCGGTCCAGCTAATGGCCAGTAGCGGCCCAGGTTGAAGCCATTGATAAACACCGGACGCG
TGGGCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_886#0      TTTTTTTTTGTGAAATTATTGATCAATATTGATCGGAATGAATTTTTATTAAACCTTACC 60
consensus_886#1      -----------GAAATTATTGATCAATATTGATCGGAATGAATTTTTATTAAACCTTACC 49
                                *************************************************

consensus_886#0      GCATCTATATTATGTTCACTGTAATATAAGTTCCATAAGTACTACGTTTTGAGAAATTCC 120
consensus_886#1      GCATCTATATTATGTTCACTGTAATATAAGTTCCATAAGTACTACGTTTTGAGAAATTCC 109
                     ************************************************************

consensus_886#0      CCCCACTTACATAAAGATAGGCTTATCGATAAACTGCACGTACGGATGCTGGATGTGCTG 180
consensus_886#1      CCCCACTTACATAAAGATAGGCTTATCGATAAACTGCACGTACGGATGCTGGATGTGCTG 169
                     ************************************************************

consensus_886#0      CTGGTACTCGATCATGACGATCTGGTTGTTTCCCTTCTTAAGAATGTGTCTCGGCACGTA 240
consensus_886#1      CTGGTACTCGATCATGACGATCTGGTTGTTTCCCTTCTTAAGAATGTGTCTCGGCACGTA 229
                     ************************************************************

consensus_886#0      GAGCGTAATCTGCGGTCCAGCTAATGGCCAGTAGCGGCCCAGGTTGAAGCCATTGATAAA 300
consensus_886#1      GAGCGTAATCTGCGGTCCAGCTAATGGCCAGTAGCGGCCCAGGTTGAAGCCATTGATAAA 289
                     ************************************************************

consensus_886#0      CACCAACCCCTTGCCCCACACGCTCGGGTACAGGTAGGTGTCGTAGATGGTGTCGCTGCT 360
consensus_886#1      CACCGGACGCGTGGGCGG------------------------------------------ 307
                     ****   * * **  *                                            

consensus_886#0      GATCGTGAACGTGCCGTAGTACACCTGTGCTCCCGCCCCATCCAGATCTTCCTGCTCGGT 420
consensus_886#1      ------------------------------------------------------------
                                                                                 

consensus_886#0      GGGCTGTTGGGTTAAGAAGTTCTCCAGATAGCGATAGCTGTCCAGCGGGAACGAGGTGAT 480
consensus_886#1      ------------------------------------------------------------
                                                                                 

consensus_886#0      GGTCCAGTTGTACAGTGGTTTCGCATCCACTGTCACTGTCCCGA 524
consensus_886#1      --------------------------------------------