These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8927#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 786 fasta sequence [AGAATCCCCACGAGGTTNAACAGCAGACACCACAGTATACACTTTGCACTTCGCCGATGCTTTGCACACAACACCAACATTAGTATGACGCGTACCGCTAGTGGGGCACGCAACGAGATGCCCCTTTGTTCGCCATGTAGCCCACACTCTGAGGCTCGCATGTGTGTTGCACACGGAAACTAGCAGTAGCAGCAGCAGCAGTAGTAGCTGCGAGCTGCTCAACCACCACCAATATAAGAGGCCCGGTGCAACGGTTCGAGTCAAGTCACTAATCTGTTCCTAGCCGAGCAACGACATCGTGCAATATTCGAAGCAATACTTTACGGGGTGTGTTACAATACCAAACCAAACAAAACCATCTGCAAAAGATGCCGTGCAAAACCTGCGTTGCCGACTGTAAATGCACCAGCCCGAACTGCGGTGCCGGATGTGGCTGCGAGTCACGCTGCACCTGCCCGTGCAAGGATGGCGCTAAGGAAGGCTGCTGCAA-GTAAATGCTAACCCACAGCACGAACCCCAGTACCAACCCAGCCGTTA-AGCGCC-GCC----GGATTTCGGATCCTGCACAAAGTACGATCAAATTGGAACAGTAGTAGG-CCACGT-AGAGGTTCTTTTTCTTCTTTTAAGTACACTTTTCATTCCCACCAATTCCCTGGTACGCCTGCAGTCCCGTGCAGCGCTTTTAAAACTATGTAAACATGTAAACATTGTAAAGTGAGATTCAAAATATACATCTCTACGGTATGTT-GGGAGAGTAGAAGTTAAACAAAAAAAAAAAAAAAAAAAAAG] [+] EMBL AL932613 [AGAATCCCCACGAGGTTNAACAGCAGACACCACAGTATACACTTTGCACTTCGCCGATGCTTTGCACACAACACCAACATTAGTATGACGCGTACCGCTAGTGGGGCACGCAACGAGATGCCCCTTTGTTCGCCATGTAGCCCACACTCTGAGGCTCGCATGTGTGTTGCACACGGAAACTAGCAGTAGCAGCAGCAGCAGTAGTAGCTGCGAGCTGCTCAACCACCACCAATATAAGAGGCCCGGTGCAACGGTTCGAGTCAAGTCACTAATCTGTTCCTAGCCGAGCAACGACATCGTGCAATATTCGAAGCAATACTTTACGGGGTGTGTTACAATACCAAACCAAACAAAACCAGCTGCAAAAGATGCCGTGCAAAACCTGCGTTGCCGACTGTAAATGCACCAGCCCGAACTGCGGTGCCGGATGTGGCTGCGAGTCACGCTGCACCTGCCCGTGCAAGGATGGCGCTAAGGAAGGCTGCTGCAACGTAAAAGCTAAACCACAGCACGAACCCCAGTACCAA CCAGCCGTTAGGGCACCTTGG GGATTNCGGATCCTGGACAAAGTACGATCTAGTTGGAACAGTATTAGGCCCACGTAAGAGG GTNNACTTC TTTAAGTACACTTTTCATT CCACCAA TCCCTGATACGCCTGCAGT CCGTGCAGCGCTTAAAAACCTATGgtaca ] [+] EMBL BM625809 [ cCGGTTCGAGTCAAGTCACTAATCTGTTCCTAGCCGAGCAACGACATCGTGCAATATTCGAAGCAATACTTTACGGGGTGTGTTACAATACCAAACCAAACAAAACCATCTGCAAAAGATGCCGTGCAAAACCTGCGTTGCCGACTGTAAATGCACCAGCCCGAACTGCGGTGCCGGATGTGGCTGCGAGTCACGCTGCACCTGCCCGTGCAAGGATGGCGCTAAGGAAGGCTGCTGCAA GTAAATGCTAACCCACAGCACGAACCCCAGTACCAACCCAGCCGTTA AGCGCC GCC GGATTTCGGATCCTGCACAAAGTACGATCAAATTGGAACAGTAGTAGG CCACGT AGAGGTTCTTTTTCTTCTTTTAAGTACACTTTTCATTCCCACCAATTCCCTGGTACGCCTGCAGTCCCGTGCAGCGCTTTTAAAACTATGTAAACATGTAAACATTGTAAAGTGAGATTCAAAATATACATCTCTACGGTATGTT GGGAGAGTAG ] [-] EMBL CNS091A8 [ caGTTCCTAGCCGAGCAACGACATCGTGCAATATTCGAAGCAATACTTTACGGGGTGTGTTACAATACCAAACCAAACAAAACCAGCTGCAAAAGATGCCGTGCAAAACCTGCGTTGCCGGCTGTAAATGCACCAGCCCGAACTGCGGTGCCGGATGTGGCTGCGAGTCACGCTGCACCTGCCCGTGCAAGGATGGCGCTAAGGAAGGCTGCTGCAA GTAAATGCTAACCCACCGCACGAACGCCAGTACCAACCCAGCCGTTA AGCGCC GCC GGATTTCGGATCCTGCACAAAGTACGATCAAATTGTAACAGTATTAGG CCACGT AGAGGTTCTTTTTCTTCTTTTAAGTACACTTTTCATTCCCACCAATTCCCTGGTACGGCTGCAGCCCCGTGCAGCGCTTTTAAAACTATGTAAACATGTAAACATTGTAAAGTGAGATTCAAAATATACATCTCTACGGTATGTT GGGAGAGTAGAAG TAAACAAAAAAAAAAAAAAAAAAAAAG] [+] EMBL BM619620 [ ccgagcaGTTCCTAGCCGAGCAACGACATCGTGCAATATTCGAAGCAATACTTTACGGGGTGTGTTACAATACCAAACCAAACAACACCAGCTGCAAAAGATGCCGTGCAAAACCTGCGTTGCCGACTGTAAATGCGCCAGCCCGAACTGCGGTGCCGGATGTGGCTGCGAGTCACGCTGCACCTGCCCGTGCAAGAATGGCGCTAAGGAAGGCTGCTGCAA GTAAATGCTAACCCACAGCACGAACCCCAGTACCAGCCCAGCCTTCA AGCGCC GCC GGATTTCGGATCCTGGACAAAGTACGATCTAATTGGAACAGTATTAGG CCACGT AGAGGTTTTTTTTCTTCTTTTAAGTACACTTGTCATTCCCACCAATTCCCTGGTACGGCTGCAGCCCCGTGCAGCGCTTTTATAACT ATGTAAACATTGTAAAGTGAGATTCAAAATATACATCTCTACGGTATGTT GGGAGAGTAGAAGT ] [+] EMBL BM613754 [ CCGAGCCGAGCAACGACATCGTGCAATATTCGAAGCAATACTTTACGGGGTGTGTTACAATACCAAACCAAACAAAACCAGCTGCAAAAGATGCCGTGCAAAACCTGCGTTGCCGACTGTAAATGCACCAGCCCGAACTGCGGTGCCGGATGTGGCTGCGAGTCACGCTGCACCTGCCCGTGCAAGGATGGCGCTAAGGAAGGCTGCTGCAA GTAAAAGCTAAACCACAGCACGAACCCCAGTACCAACCCAGCCGTT AGGGCA CCCTTGGGGATTTCGGATCCTGGACAAAGTACGATCTAGTTGGAACAGTATTAGG CCACGT AGAGGGTTTTTTTCTTCTTTTAAGTACACTTTTCATTCCCACCAATTCCCTGATACGCCTGCAGTCCCGTGCAGCGCTTTAAAAACTATGTAAACATGTAAACATTGTAAAGTGAGATTCAAAATATACATCTCTACGGTATGTT GGGAGAGTAGAAGTTAAACgt ] [+] EMBL BM595356 [ CCGAGCCGAGCAACGACATCGTGCAATATTCGAAGCAATACTTTACGGGGTGTGTTACAATACCAAACCAAACAAAACCATCTGCAAAAGATGCCGTGCAAAACCTGCGTTGCCGACTGTAAATGCACCAGCCCGAACTGCGGTGCCGGATGTGGCTGCGAGTCACGCTGCACCTGCCCGTGCAAGGATGGCGCTAAGGAAGGCTGCTGCAA GTAAATGCTAACCCACAGCACGAACCCCAGTACCAACCCAGCCGTTA AGCGCC GCC GGATTTCGGATCCTGCACAAAGTACGATCAAATTGGAACAGTAGTAGG CCACGT AGAGGTTCTTTTTCTTCTTTTAAGTACACTTTTCATTCCCACCAATTCCCTGGTACGCCTGCAGTCCCGTGCAGCGCTTTTAAAACTATGTAAACATGTAAACATTGTAAAGTGAGATTCAAAATATACATCTCTACGGTATGTTGGGGAGAGTAG ] [+] EMBL BM577347 [ ccgGCCGAGCAACGACATCGTGCAATATTCGAAGCAATACTTTACGGGGTGTGTTACAATACCAAACCAAACAAAACCATCTGCAAAAGATGCCGTGCAAAACCTGCGTTGCCGACTGTAAATGCACCAGCCCGAACTGCGGTGCCGGATGTGGCTGCGAGTCACGCTGCACCTGCCCGTGCAAGGATGGCGCTAAGGAAGGCTGCTGCAA GTAAATGCTAACCCACAGCACGAACCCCAGTACCAACCCAGCCGTTA AGCGCC GCC GGATTTCGGATCCTGCACAAAGTACGATCAAATTGGAACAGTAGTAGG CCACGT AGAGGTTCTTTTTCTTCTTTTAAGTACACTTTTCATTCCCACCAATTCCCTGGTACGCCTGCAGTCCCGTGCAGCGCTTTTAAAACTATGTAAACATGTAAACATTGTAAAGTGAGATTCAAAATATACATCTCTA ] [+] EMBL BM646138 [ ccgCGACATCGTGCAATATTCGAAGCAATACTTTACGGGGTGTGTTACAATACCAAACCAAACAAAACCATCTGCAAAAGATGCCGTGCAAAACCTGCGTTGCCGACTGTAAATGCACCAGCCCGAACTGCGGTGCCGGATGTGGCTGCGAGTCACGCTGCACCTGCCCGTGCAAGGATGGCGCTAAGGAAGGCTGCTGCAA GTAAATGCTAACCCACAGCACGAACCCCAGTACCAACCCAGCCGTTA AGCGCC GCC GGATTTCGGATCCTGCACAAAGTACGATCAAATTGGAACAGTAGTAGG CCACGT AGAGGTTCTTTTTCTTCTTTTAAGTACACTTTTCATTCCCACCAATTCCCTGGTACGCCTGCAGTCCCGTGCAGCGCTTTTAAAACTATGTAAACATGTAAACATTGTAAAGTGAGATTCAAAATATACATCTCTACGGTATGTT GGGAGAGTAGAAGTaac ] [+] EMBL BM603969 [ ccgCGAAGCAATACTTTACGGGGTGTGTTACAATACCAAACCAAACAAAACCATCTGCAAAAGATGCCGTGCAAAACCTGCGTTGCCGACTGTAAATGCACCAGCCCGAACTGCGGTGCCGGATGTGGCTGCGAGTCACGCTGCACCTGCCCGTGCAAGGATGGCGCTAAGGAAGGCTGCTGCAA GTAAATGCTAACCCACAGCACGAACCCCAGTACCAACCCAGCCGTTA AGCGCC GCC GGATTTCGGATCCTGCACAAAGTACGATCAAATTGGAACAGTAGTAGG CCACGT AGAGGTTCTTTTTCTTCTTTTAAGTACACTTTTCATTCCCACCAATTCCCTGGTACGCCTGCAGTCCCGTGCAGCGCTTTTAAAACTATGTAAACATGTAAACATTGTAAAGTGAGATTCAAAATATACATCTCTACGGTATGTT GGGAGAGTAGAAGT ] [+] EMBL BM603964 [ ccgCGAAGCAATACTTTACGGGGTGTGTTACAATACCAAACCAAACAAAACCATCTGCAAAAGATGCCGTGCAAAACCTGCGTTGCCGACTGTAAATGCACCAGCCCGAACTGCGGTGCCGGATGTGGCTGCGAGTCACGCTGCACCTGCCCGTGCAAGGATGGCGCTAAGGAAGGCTGCTGCAA GTAAATGCTAACCCACAGCACGAACCCCAGTACCAACCCAGCCGTTA AGCGCC GCC GGATTTCGGATCCTGCACAAAGTACGATCAAATTGGAACAGTAGTAGG CCACGT AGAGGTTCTTTTTCTTCTTTTAAGTACACTTTTCATTCCCACCAATTCCCTGGTACGCCTGCAGTCCCGTGCAGCGCTTTTAAAACTATGTAAACATGTAAACATTGTAAAGTGAGATTCAAAATATACATCTCTACGGTATGTT GGGAGA ] [+] EMBL BM610071 [ ACTTTACGGGGTGTGTTACAATACCAAACCAAACAAAACCAGCTGCAAAAGATGCCGTGCAAAACCTGCGTTGCCGACTGTAAATGCACCAGCCCGAACTGCGGTGCCGGATGTGGCTGCGAGTCACGCTGCACCTGCCCGTGCAAGGATGGCGCTAAGGAAGGCTGCTGCAA GTAAAAGCTAAACCACAGCACGAACCCCAGTACCAACCCAGCCGTT AGGGCA CCCTTGGGGATTTCGGATCCTGGACAAAGTACGATCTAGTTGGAACAGTATTAGG CCACGT AGAGGGTTTTTTTCTTCTTTTAAGTACACTTTTCATTCCCACCAATTCCCTGATACGCCTGCAGTCCCGTGCAGCGCTTTAAAAACTATGTAAACATGTAAACATTGTAAAGTGAGATTCAAAA ] consensusID : consensus_8927#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 524 fasta sequence [TAAGCAGTTCCTAGCCGAGCAACGACATCGTGCAATAATCGAAGCAATACTTTACGGGGTGTGTTACAATACCAAACCAAACAAAACCAGCTGCAAAAGATGCCGTGCAAAACCTGCGTTGCCGACTGTAAATGCACCAGCCCGAACTGCGGTGCCGGATGTGGCTGCGAGTCACGCTGCACCTGCCCGTGCAAGGATGGCGCTAAGGAAGGCTGCTGCAAGTAAATGCTAACCCACATCACGAGCCCCAGTACCAGCCCAGCCTTCAAGCGCCGCCGGATTTCGGATCCTGCACAAAGTACGATCAAATTGGAACAGTATTAGGCCACGTAGAGGTTTTTTTTTCTTCTTTTAAGTACACTTGTCATTCCCACCAATTCCCTGGTACGGCTGCAGCCCCGTGCAGCGCTTTTAAAACTATGTAAACATGTAAACATTGTAAAGTGAGATTCAAAATATACATCTCTACGGTAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGAGCGGGGGGCGGGC] [+] EMBL CNS08GJG [TAAGCAGTTCCTAGCCGAGCAACGACATCGTGCAATAATCGAAGCAATACTTTACGGGGTGTGTTACAATACCAAACCAAACAAAACCAGCTGCAAAAGATGCCGTGCAAAACCTGCGTTGCCGACTGTAAATGCACCAGCCCGAACTGCGGTGCCGGATGTGGCTGCGAGTCACGCTGCACCTGCCCGTGCAAGGATGGCGCTAAGGAAGGCTGCTGCAAGTAAATGCTAACCCACATCACGAGCCCCAGTACCAGCCCAGCCTTCAAGCGCCGCCGGATTTCGGATCCTGCACAAAGTACGATCAAATTGGAACAGTATTAGGCCACGTAGAGGTTTTTTTTTCTTCTTTTAAGTACACTTGTCATTCCCACCAATTCCCTGGTACGGCTGCAGCCCCGTGCAGCGCTTTTAAAACTATGTAAACATGTAAACATTGTAAAGTGAGATTCAAAATATACATCTCTACGGTAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGAGCGGGGGGCGGGC] consensusID : consensus_8927#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 476 fasta sequence [CCGCCCACGCGTCCGACGACATCGTGCAATATTCGAAGCAATACTTTACGGGGTGTGTTACAATACCAAACCAAACAACACCAGCTGCAAAAGATGCCGTGCAAAACCTGCGTTGCCGACTGTAAATGCGCCAGCCCGAACTGCGGTGCCGGATGTGGCTGCGAGTCACGCTGCACCTGCCCGTGCAAGAATGGCGCTAAGGAAGGCTGCTGCAAGTAAATGCTAACCCACAGCACGAACCCCAGTACCAGCCCAGCCTTCAAGCGCCGCCGGATTTCGGATCCTGGACAAAGTACGATCTAATTGGAACAGTATTAGGCCACGTAGAGGTTTTTTTTCTTCTTTTAAGTACACTTGTCATTCCCACCAATTCCCTGGTACGGCTGCAGCCCCGTGCAGCGCTTTTATAACTATGTAAACATTGTAAAGTGAGATTCAAAATATACATCTCTACGGTATGTTGGGAGAGTAGAAGT] [+] EMBL BM591339 [CCGCCCACGCGTCCGACGACATCGTGCAATATTCGAAGCAATACTTTACGGGGTGTGTTACAATACCAAACCAAACAACACCAGCTGCAAAAGATGCCGTGCAAAACCTGCGTTGCCGACTGTAAATGCGCCAGCCCGAACTGCGGTGCCGGATGTGGCTGCGAGTCACGCTGCACCTGCCCGTGCAAGAATGGCGCTAAGGAAGGCTGCTGCAAGTAAATGCTAACCCACAGCACGAACCCCAGTACCAGCCCAGCCTTCAAGCGCCGCCGGATTTCGGATCCTGGACAAAGTACGATCTAATTGGAACAGTATTAGGCCACGTAGAGGTTTTTTTTCTTCTTTTAAGTACACTTGTCATTCCCACCAATTCCCTGGTACGGCTGCAGCCCCGTGCAGCGCTTTTATAACTATGTAAACATTGTAAAGTGAGATTCAAAATATACATCTCTACGGTATGTTGGGAGAGTAGAAGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8927#0 AGAATCCCCACGAGGTTNAACAGCAGACACCACAGTATACACTTTGCACTTCGCCGATGC 60 consensus_8927#2 ------------------------------------------------------------ consensus_8927#1 ------------------------------------------------------------ consensus_8927#0 TTTGCACACAACACCAACATTAGTATGACGCGTACCGCTAGTGGGGCACGCAACGAGATG 120 consensus_8927#2 ------------------------------------------------------------ consensus_8927#1 ------------------------------------------------------------ consensus_8927#0 CCCCTTTGTTCGCCATGTAGCCCACACTCTGAGGCTCGCATGTGTGTTGCACACGGAAAC 180 consensus_8927#2 ------------------------------------------------------------ consensus_8927#1 ------------------------------------------------------------ consensus_8927#0 TAGCAGTAGCAGCAGCAGCAGTAGTAGCTGCGAGCTGCTCAACCACCACCAATATAAGAG 240 consensus_8927#2 ------------------------------------------------------------ consensus_8927#1 ------------------------------------------------------------ consensus_8927#0 GCCCGGTGCAACGGTTCGAGTCAAGTCACTAATCTGTTCCTAGCCGAGCAACGACATCGT 300 consensus_8927#2 -----------------------------------CCGCCCACGCGTCCGACGACATCGT 25 consensus_8927#1 -----------------------------TAAGCAGTTCCTAGCCGAGCAACGACATCGT 31 ** * ** * ********** consensus_8927#0 GCAATATTCGAAGCAATACTTTACGGGGTGTGTTACAATACCAAACCAAACAAAACCATC 360 consensus_8927#2 GCAATATTCGAAGCAATACTTTACGGGGTGTGTTACAATACCAAACCAAACAACACCAGC 85 consensus_8927#1 GCAATAATCGAAGCAATACTTTACGGGGTGTGTTACAATACCAAACCAAACAAAACCAGC 91 ****** ********************************************** **** * consensus_8927#0 TGCAAAAGATGCCGTGCAAAACCTGCGTTGCCGACTGTAAATGCACCAGCCCGAACTGCG 420 consensus_8927#2 TGCAAAAGATGCCGTGCAAAACCTGCGTTGCCGACTGTAAATGCGCCAGCCCGAACTGCG 145 consensus_8927#1 TGCAAAAGATGCCGTGCAAAACCTGCGTTGCCGACTGTAAATGCACCAGCCCGAACTGCG 151 ******************************************** *************** consensus_8927#0 GTGCCGGATGTGGCTGCGAGTCACGCTGCACCTGCCCGTGCAAGGATGGCGCTAAGGAAG 480 consensus_8927#2 GTGCCGGATGTGGCTGCGAGTCACGCTGCACCTGCCCGTGCAAGAATGGCGCTAAGGAAG 205 consensus_8927#1 GTGCCGGATGTGGCTGCGAGTCACGCTGCACCTGCCCGTGCAAGGATGGCGCTAAGGAAG 211 ******************************************** *************** consensus_8927#0 GCTGCTGCAAGTAAATGCTAACCCACAGCACGAACCCCAGTACCAACCCAGCCGTTAAGC 540 consensus_8927#2 GCTGCTGCAAGTAAATGCTAACCCACAGCACGAACCCCAGTACCAGCCCAGCCTTCAAGC 265 consensus_8927#1 GCTGCTGCAAGTAAATGCTAACCCACATCACGAGCCCCAGTACCAGCCCAGCCTTCAAGC 271 *************************** ***** *********** ******* * **** consensus_8927#0 GCCGCCGGATTTCGGATCCTGCACAAAGTACGATCAAATTGGAACAGTAGTAGGCCACGT 600 consensus_8927#2 GCCGCCGGATTTCGGATCCTGGACAAAGTACGATCTAATTGGAACAGTATTAGGCCACGT 325 consensus_8927#1 GCCGCCGGATTTCGGATCCTGCACAAAGTACGATCAAATTGGAACAGTATTAGGCCACGT 331 ********************* ************* ************* ********** consensus_8927#0 AGAGGTTCTTTTT-CTTCTTTTAAGTACACTTTTCATTCCCACCAATTCCCTGGTACGCC 659 consensus_8927#2 AGAGGTTTTTTTT-CTTCTTTTAAGTACACTTGTCATTCCCACCAATTCCCTGGTACGGC 384 consensus_8927#1 AGAGGTTTTTTTTTCTTCTTTTAAGTACACTTGTCATTCCCACCAATTCCCTGGTACGGC 391 ******* ***** ****************** ************************* * consensus_8927#0 TGCAGTCCCGTGCAGCGCTTTTAAAACTATGTAAACATGTAAACATTGTAAAGTGAGATT 719 consensus_8927#2 TGCAGCCCCGTGCAGCGCTTTTATAACTATGT--------AAACATTGTAAAGTGAGATT 436 consensus_8927#1 TGCAGCCCCGTGCAGCGCTTTTAAAACTATGTAAACATGTAAACATTGTAAAGTGAGATT 451 ***** ***************** ******** ******************** consensus_8927#0 CAAAATATACATCTCTACGGTATGTTGGGAGAGTAGAAGTTAAACAAAAAAAAAAAAAAA 779 consensus_8927#2 CAAAATATACATCTCTACGGTATGTTGGGAGAGTAGAAGT-------------------- 476 consensus_8927#1 CAAAATATACATCTCTACGGTAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGA 511 ********************** * * * ** consensus_8927#0 AAAAAAG------ 786 consensus_8927#2 ------------- consensus_8927#1 GCGGGGGGCGGGC 524 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||