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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8977#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 936 fasta sequence
[CCGCGGACGCGT-CGGTGCGATCGGTTCTGACTAGTCGCGTGCCCTTTCGCGTGTGATCAATCCTCACTGCAAGTTAGGCGTTAGCGGTGCGTGTAAAGTGCATTTACCGTCCAGTGCCGAAGTGAACATGAAGCTGCAAATTGCTCTACTACTTACCGTCGCCATTATCGGAACCGGGTCCGCCGCCAAATTCCCAAATGCCTTCTCGCGATGCAAACAGGAGGATGGCAACTGTTTACTGGAGGCGGTCACTGCCACCTTCCGGAATTTCCACAAAGGAGTTCCGGAAATTGGGCTGGTACCACTAGATCCGTTGCGCATCGATAAAATGGACATCGTGCAAGGAGATGGTCCAATCAACATCGTACTAAACTTCAAAAAGGTGGACCTAGGTGGATTCCGGGAGGCTCAAATTAAGAAAATCAACGGATTCACTTCTAATCCTACCAAGATGGAGATGAACCTTCTCGTTCCGGTTGCTTCACTCGTCGGAGGTTATAGAATTAATGGCAAAGTGTTGATCCTTCCCATTCAAGGTGAAGGTAACAGCAATATGACTATGGTTAACTGTGATATAT-CGCTAAAGTGGACCGGTAAGCTTGTGGAGAAGAGTGGCCAACAATTTTACCAAGTCGACAAGTTTAAGGTGCACTTCGACACCAGCCGGTTCTACATGGACTTTTCGAACCTGTTCAACGGTGATAAGGCGCTTGGCGATAATATGAATGTGTTCCTGAATGATAACTGGCAGGACATCCTAAAGGAACTGAAGCCTGCGATATCAGCGGCATTTACAAAGATTTTCCAGGCTGTTGTTAGCAACGTTTTCAACAAAGTGCCTTACAACGAGCTTTTTCTCGCTTAAGTGGGGAATGGGGTCTACTATAAATACATTAGATAACTAAGAAACATTTGGAAGATGATATTATGTGCAAT]
[+] EMBL BM579863 [CCGCGGACGCGT GGGTGCGATCGGTTCTGACTAGTCGCGTGCCCTTTCGCGTGTGATCAATCCTCACTGCAAGTTAGGCGTTAGCGGTGCGTGTAAAGTGCATTTACCGTCCAGTGCCGAAGTGAACATGAAGCTGCAAATTGCTCTACTACTTACCGTCGCCATTATCGGAACCGGGTCCGCCGCCAAATTTCCAAATGCCTTCTCGCGATGCAAACAGGAGGATGGCAACTGTTTACTGGAGGCGGTCACTGCCACCTTCCGGAATTTCCACAAAGGAGTTCCGGAAATTGGACTGGTACCACTAGATCCGTTGCGCATCGATAAAATGGACATCGTGCAAGGAGATGGTCCAATCAACATCGTACTAAACTTCAAAAAGGTGGACCTAGGTGGATTCCGGGAGGCTCAAATTAAGAAAATCAACGGATTCACTTCTAATCCTACCAAGATGGAGATGAACATTCTCGTTCCGGTTGCTTCACTCGTCGGAGGTTATAGAATTAATGGCAAAGTGTTGATCCTTCCCATTCAAGGTGAAGGCAACAGCAATATGACTATGGTTAACTGTGATATAT CGCTAAAGTGGACCGGTAAGCTCGTGGAGAAGAGTGGCCAACAATTTTACCAAGTCGACAAGTTTAAGGTGCACTTCGACACCAGCCGGTTCTACATGGACTTCTCGAACCT ]
[+] EMBL BM623113 [CCGCCCACGCGTCCGGTGCGATCGGTTCTGACTAGTCGCGTGCCCTTTCGCGTGTGATCAATCCTCACTGCAAGTTAGGCGTTAGCGGTGCGTGTAAAGTGCATTTACCGTCCAGTGCCGAAGTGAACATGAAGCTGCAAATTGCTCTACTACTTACCGTCGCCATTATCGGAACCGGGTCCGCCGCCAAATTTCCAAATGCCTTCTCGCGATGCAAACAGGAGGATGGCAACTGTTTACTGGAGGCGGTCACTGCCACCTTCCGGAATTTCCACAAAGGAGTTCCGGAAATTGGACTGGTACCACTAGATCCGTTGCGCATCGATAAAATGGACATCGTGCAAGGAGATGGTCCAATCAACATCGTACTAAACTTCAAAAAGGTGGACCTAGGTGGATTCCGGGAGGCTCAAATTAAGAAAATCAACGGATTCACTTCTAATCCTACCAAGATGGAGATGAACATTCTCGTTCCGGTTGCTTCACTCGTCGGAGGTTATAGAA ]
[+] EMBL BM604861 [ c CGGTGCGATCGGTTCTGACTAGTCGCGTGCCCTTTCGCGTGTGATCAATCCTCACTGCAAGTTAGGCGTTAGCGGTGCGTGTAAAGGGCATTTACCGTCCAGTGCCGAAGTGAACATGAAGCTGCAAATTGCTCTACTACTTACCGTCGCCATTATCGGAACCGGGGCCGCCGCCAAATTCCCAAATGCCTTCTCGCGATGCAAACAGGAGGATGGCAACTGTTTACTGGAGGCGGTCACTGCCACCTTCCGGAATTTCCACAAAGGAGTTCCGGAAATTGGGCTGGTACCACTAGATCCGTTGCGCATCGATAAAATGGACATCGTGCAAGGAGATGGGCCAATCAACATCGTACTAAACTTCAAAAAGGTGGACCTAGGTGGATTCCGGGAGGCTCAAATTAAGAAAATCAACGGATTCACTTCTAATCCTACCAAGATGGAGATGAACCTTCTCGTTCCGGTTGCTTCACTCGTCGGAGGTTATAGAATTAATGGGAAAGTGTTGATCCTT ]
[+] EMBL BM589287 [ ccgatcGTGCGATCGGTTCTGACTAGTCGCGTGCCCTTTCGCGTGTGATCAATCCTCACTGCAAGTTAGGCGTTAGCGGTGCGTGTAAAGTGCATTTACCGTCCAGTGCCGAAGTGAACATGAAGCTGCAAATTGCTCTACTACTTACCGTCGCCATTATCGGAACCGGGTCCGCCGCCAAATTTCCAAATGCCTTCTCGCGATGCAAACAGGAGGATGGCAACTGTTTACTGGAGGCGGTCACTGCCACCTTCCGGAATTTCCACAAAGGAGTTCCGGAAATTGGACTGGTACCACTAGATCCGTTGCGCATCGATAAAATGGACATCGTGCAAGGAGATGGTCCAATCAACATCGTACTAAACTTCAAAAAGGTGGACCTAGGTGGATTCCGGGAGGCTCAAATTAAGAAAATCAACGGATTCACTTCTAATCCTACCAA ]
[+] EMBL BM609874 [ TCGGTTCTGACTAGTCGCGTGCCCTCTCGCGTGTGATCAATCCTCACTGCAAGTTAGGCGTTAGCGGTGCGTGTAAAGTGCATTTACCGTCCAGTGCCGTAGTGAACATGAAGCTGCAAATTGCTCTACTACTTACCGTCGCCATTATCGGAACCGGGTCCGCCGCCAAATTCCCAAATGCCTTCTCGCGATGCAAACAGGAGGATGGCAACTGTTTACTGGAGGCGGTCACTGCCACCTTCCGGAATTTCCACAAAGGAGTTCCGGAAATTGGGCTGGTACCACTAGATCCGTTGCGCATCGATAAAATGGACATCGTGCAAGGAGATGGTCCAATCAACATCGTACTAAACTTCAAAAAGGTGGACCTAGGTGGATTCCGGGAGGCTCAAATTAAGAAAATCAACGGATTCACTTCTAATCCTACCAAGATGGAGATGAACCTTCTCGTTCCGGTTGCTTCACTCGTCGGAGGTTATAGAATTAATGGCAAAGTGTTGATCCTTCCCATTCAAGGTGAAGGTAACAGCAATATGACTATGGTTAACTGTGATATAT CGCTAAAGTGGACCGGTAAGCT ]
[+] EMBL BX617738 [ CTAGTCGCGTGCCCTTTCGCGTGTGATCAATCCTCACTGCAAGTTAGGCGTTAGCGGTGCGTGTAAAGTGCATTTACCGTCCAGTGCCGAAGTGAACATGAAGCTGCAAATTGCTCTACTACTTACCGTCGCCATTATCGGAACCGGGTCCGCCGCCAAATTCCCAAATGCCTTCTCGCGATGCAAACAGGAGGATGGCAACTGTTTACTGGAGGCGGTCACTGCCACCTTCCGGAATTTCCACAAAGGAGTTCCGGAAATTGGGCTGGTACCACTAGATCCGTTGCGCATCGATAAAATGGACATCGTGCAAGGAGATGGTCCAATCAACATCGTACTAAACTTCAAAAAGGTGGACCTAGGTGGATTCCGGGA ]
[+] EMBL BX618945 [ CGCGTGCCCTTTCGCGTGTGATCAATCCTCACTGCAAGTTAGGCGTTAGCGGTGCGTGTAAAGTGCATTTACCGTCCAGTGCCGAAGTGAACATGAAGCTGCAAATTGCTCTACTACTTACCGTCGCCATTATCGGAACCGGGTCCGCCGCCAAATTCCCAAATGCCTTCTCGCGATGCAAACAGGAGGATGGCAACTGTTTACTGGAGGCGGTCACTGCCACCTTCCGGAATTTCCACAAAGGAGTTCCGGAAATTGCGCTGGTACCACTAGATCCGTTGCGCATCGATAA ]
[+] EMBL BX608771 [ AGTGCATTTACCGTCCAGTGCCGAAGTGAACATGAAGCTGCAAATTGCTCTACTACTTACCGTCGCCATTATCGGAACCGGGTCCGCCGCCAAATTCCCAAATGCCTTCTCGCGATGCAAACAGGAGGATGGCAACTGTTTACTGGAGGCGGTCACTGCCACCTTCCGGAATTTCCACAAAGGAGTTCCGGAAATTGGGCTGGTACCACTAGATCCGTTGCGCATCGATAAAATGGACATCGTGCAAGGAGATGGTCCAATCAACATCGTACTAAACTTCAAAAAGGTGGACCTAGGTGGATTCCGGGAGGCTCAAATTAAGAAAATCAACGGATTCACTTCTAATCCTACCAAGATGGAGATGAACCTTCTCGTTCCGGTTGCTTCACTCGTCGGAGGTTATAGAATTAATGGCAAAGTGTTGATCCTTCCCATTCAAGGTGAAGGTAACAGCAATATGACTATGGTTAACTGTGATATAT CGCTAAAGTGGACCGGTAAGCTTGTGGAGAAGAGTGGCCAACAATTTTACCAAGTCGACAAGTTTAAGGTGCACTTCGACACCAGCCGGTTCTACATGGACTTTTCGAACCTGTTCAACGGTGATAAGGCGCTTGGCGATAATATGAATGTGTTCCTGAATGATAACTGGCAG ]
[+] EMBL CNS09NCX [ TCGCCATTATCGGAACCGGGTCCGCCGCCAAATTCCCAAATGCCTTCTCGCGATGCAAACAGGAGGATGGCAACTGTTTACTGGAGGCGGTCACTGCCACCTTCCGGAATTTCCACAAAGGAGTTCCGGAAATTGGGCTGGTACCACTAGATCCGTTGCGCATCGATAAAATGGACATCGTGCAAGGAGATGGTCCAATCAACATCGTACTAAACTTCAAAAAGGTGGACCTAGGTGGATTCCGGGAGGCTCAAATTAAGAAAATCAACGGATTCACTTCTAATCCTACCAAGATGGAGATGAACCTTCTCGTTCCGGTTGCTTCACTCGTCGGAGGTTATAGAATTAATGGCAAAGTGTTGATCCTTCCCATTCAAGGTGAAGGTAACAGCAATATGACTATGGTTAACTGTGATATATCCGCTAAAGTGGACCGGTAAGCTTGTGGAGAAGAGTGGCCAACAATTTTACCAGGTCGACAAGTTTAAGGTGCACTTCGACA ]
[-] EMBL CNS09NCY [ ATGGTCCAATCAACATCGTACTAAACTTCAAAAAGGTGGACCTAGGTGGATTCCGGGAGGCTCAAATTAAGAAAATCAACGGATTCACTTCTAATCCTACCAAGATGGAGATGAACCTTCTCGTTCCGGTTGCTTCACTCGTCGGAGGTTATAGAATTAATGGCAAAGTGTTGATCCTTCCCATTCAAGGTGAAGGTGACAGCAATATGACTATGGTTAACTGTGATATAT CGCTAAAGTGGACCGGTAAGCTTGTGGAGAAGAGTGGCCAACAATTTTACCAGGTCGACAAGTTTAAGGTGCACTTCGACACCAGCCGGTTCTACATGGACTTTTCGAACCTGTTCAACGGTGATAAGGCGCTTGGCGATAATATGAATGTGTTCCTGAATGATAACTGGCAGGACATCCTAAAGGAACTGAAGCCTGCGATATCAGCGGCATTTACAAAGATTTTCCAGGCTGTTGTTAGCAACGTTTTCAACAAAGTGCCTTACAACGAGCTTTTTCTCGCTTAAGTGGGGAATGGGGTCTACTATAAATACATTAGATAACTAAGAAACATTTGGAAGATGATATTATGTGCAAT]
consensusID : consensus_8977#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 566 fasta sequence
[GATCCCCCGAGGTTATCGGTTCTGACTAGTCGCGTGCCCTCTCGCGTGTGATCAATCCTCACTGCAAGTTAGGCGTTAGCGGTGCGTGTAAAGTGCATTTACCGTCCAGTGCCGAAGTGAACATGAAGCTGCAAATTGCTCTACTACTTACCGTCGCCATTATCGGAACCGGGTCCGCCGCCAAATTCCCAAATGCCTTCTCGCGATGCAAACAGGAGGATGGCAACTGTTTACTGGAGGCGGTCACTGCCACCTTCCGGAATTTCCACAAAGGAGTTCCGGAAATTGGGCTGGTACCACTAGATCCGTTGCGCATCGATAAAATGGACATCGTGCAAGGAGATGGTCCAATCAACATCGTACTAAACTTCAAAAAGGTGGACCTAGGTGGATTCCGGGAGGCTCAAATTAAGAAAATCAACGGATTCACTTCTAATCCTACCAAGATGGAGATGAACCTTCTCGTTCCGGTTGCTTCACTCGTCGGAGGTTATAGAATTAATGGCAAAGTGTTGATCCTTCCCATTCAAGGTGAAGGTAACAGCAATATGACTATGGTTAACTGT]
[+] EMBL AL692281 [GATCCCCCGAGGTTATCGGTTCTGACTAGTCGCGTGCCCTCTCGCGTGTGATCAATCCTCACTGCAAGTTAGGCGTTAGCGGTGCGTGTAAAGTGCATTTACCGTCCAGTGCCGAAGTGAACATGAAGCTGCAAATTGCTCTACTACTTACCGTCGCCATTATCGGAACCGGGTCCGCCGCCAAATTCCCAAATGCCTTCTCGCGATGCAAACAGGAGGATGGCAACTGTTTACTGGAGGCGGTCACTGCCACCTTCCGGAATTTCCACAAAGGAGTTCCGGAAATTGGGCTGGTACCACTAGATCCGTTGCGCATCGATAAAATGGACATCGTGCAAGGAGATGGTCCAATCAACATCGTACTAAACTTCAAAAAGGTGGACCTAGGTGGATTCCGGGAGGCTCAAATTAAGAAAATCAACGGATTCACTTCTAATCCTACCAAGATGGAGATGAACCTTCTCGTTCCGGTTGCTTCACTCGTCGGAGGTTATAGAATTAATGGCAAAGTGTTGATCCTTCCCATTCAAGGTGAAGGTAACAGCAATATGACTATGGTTAACTGT]
[+] EMBL BX612677 [ CGGTGCGTGTAAAGTGCATTTACCGTCCAGTGCCGAAGTGAACATGAAGCTGCAAATTGCTCTACTACTTACCGTCGCCATTATCGGAACCGGGTCCGCCGCCAAATTCCCAAATGCCTTCTCGCGATGCAAACAGGAGGATGGCAACTGTTTACTGGAGGCGGTCACTGCCACCTTCCGGAATTTCCACAAAGGAGTTCCGGAAATTGGGCTGGTACCACTAGATCCGTTGCGCATCGATAAAATGGACATCGTGCAAGGAGATGGTCCAATCAACATCGTACTAAACTTCAAAAAGGTGGACCTAGGTGGATTCCGGGAGGCTCAAATTAAGAAAATCAACGGATTCACTTCTAATCCTACCAAGATGGAGATGAACCTTCTCGTTCCGGTTGCTTCACTCGTCGGAGGTTATAGAATTAATGGCAAAGTGTTGATCCTTCCCATTCAAGGTGAAGGTAACAGCAATATGACTATGGTT ]
consensusID : consensus_8977#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 263 fasta sequence
[TTACCGCCCAGTGCCGAAGTGAACATGAAGCTGCAAATGGCTCTACTACTTACCGTCGCCATTATCGGAACCGGGCCCGCCGCCAAATCCCCAAAGGCCTCCTCGCGATGCAAACAGGAGGAAGGCAACTGTTTACTGGAGGCGGTCACGGCCACCTGCCGGAATCCCCACAAAGGAGCTCCGGAAATGGGGCGGGTACCACTAGAGCCGTTGCGCACCGAGAAAAGGGACACCGTGCAAGGAGAAGGGCCAATCAACATCGT]
[+] EMBL BX610185 [TTACCGCCCAGTGCCGAAGTGAACATGAAGCTGCAAATGGCTCTACTACTTACCGTCGCCATTATCGGAACCGGGCCCGCCGCCAAATCCCCAAAGGCCTCCTCGCGATGCAAACAGGAGGAAGGCAACTGTTTACTGGAGGCGGTCACGGCCACCTGCCGGAATCCCCACAAAGGAGCTCCGGAAATGGGGCGGGTACCACTAGAGCCGTTGCGCACCGAGAAAAGGGACACCGTGCAAGGAGAAGGGCCAATCAACATCGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8977#0 CCGCGGACGCGTCGGTGCGATCGGTTCTGACTAGTCGCGTGCCCTTTCGCGTGTGATCAA 60
consensus_8977#1 -----GATCCCCCGAGGTTATCGGTTCTGACTAGTCGCGTGCCCTCTCGCGTGTGATCAA 55
consensus_8977#2 ------------------------------------------------------------
consensus_8977#0 TCCTCACTGCAAGTTAGGCGTTAGCGGTGCGTGTAAAGTGCATTTACCGTCCAGTGCCGA 120
consensus_8977#1 TCCTCACTGCAAGTTAGGCGTTAGCGGTGCGTGTAAAGTGCATTTACCGTCCAGTGCCGA 115
consensus_8977#2 -------------------------------------------TTACCGCCCAGTGCCGA 17
****** **********
consensus_8977#0 AGTGAACATGAAGCTGCAAATTGCTCTACTACTTACCGTCGCCATTATCGGAACCGGGTC 180
consensus_8977#1 AGTGAACATGAAGCTGCAAATTGCTCTACTACTTACCGTCGCCATTATCGGAACCGGGTC 175
consensus_8977#2 AGTGAACATGAAGCTGCAAATGGCTCTACTACTTACCGTCGCCATTATCGGAACCGGGCC 77
********************* ************************************ *
consensus_8977#0 CGCCGCCAAATTCCCAAATGCCTTCTCGCGATGCAAACAGGAGGATGGCAACTGTTTACT 240
consensus_8977#1 CGCCGCCAAATTCCCAAATGCCTTCTCGCGATGCAAACAGGAGGATGGCAACTGTTTACT 235
consensus_8977#2 CGCCGCCAAATCCCCAAAGGCCTCCTCGCGATGCAAACAGGAGGAAGGCAACTGTTTACT 137
*********** ****** **** ********************* **************
consensus_8977#0 GGAGGCGGTCACTGCCACCTTCCGGAATTTCCACAAAGGAGTTCCGGAAATTGGGCTGGT 300
consensus_8977#1 GGAGGCGGTCACTGCCACCTTCCGGAATTTCCACAAAGGAGTTCCGGAAATTGGGCTGGT 295
consensus_8977#2 GGAGGCGGTCACGGCCACCTGCCGGAATCCCCACAAAGGAGCTCCGGAAATGGGGCGGGT 197
************ ******* ******* *********** ********* **** ***
consensus_8977#0 ACCACTAGATCCGTTGCGCATCGATAAAATGGACATCGTGCAAGGAGATGGTCCAATCAA 360
consensus_8977#1 ACCACTAGATCCGTTGCGCATCGATAAAATGGACATCGTGCAAGGAGATGGTCCAATCAA 355
consensus_8977#2 ACCACTAGAGCCGTTGCGCACCGAGAAAAGGGACACCGTGCAAGGAGAAGGGCCAATCAA 257
********* ********** *** **** ***** ************ ** ********
consensus_8977#0 CATCGTACTAAACTTCAAAAAGGTGGACCTAGGTGGATTCCGGGAGGCTCAAATTAAGAA 420
consensus_8977#1 CATCGTACTAAACTTCAAAAAGGTGGACCTAGGTGGATTCCGGGAGGCTCAAATTAAGAA 415
consensus_8977#2 CATCGT------------------------------------------------------ 263
******
consensus_8977#0 AATCAACGGATTCACTTCTAATCCTACCAAGATGGAGATGAACCTTCTCGTTCCGGTTGC 480
consensus_8977#1 AATCAACGGATTCACTTCTAATCCTACCAAGATGGAGATGAACCTTCTCGTTCCGGTTGC 475
consensus_8977#2 ------------------------------------------------------------
consensus_8977#0 TTCACTCGTCGGAGGTTATAGAATTAATGGCAAAGTGTTGATCCTTCCCATTCAAGGTGA 540
consensus_8977#1 TTCACTCGTCGGAGGTTATAGAATTAATGGCAAAGTGTTGATCCTTCCCATTCAAGGTGA 535
consensus_8977#2 ------------------------------------------------------------
consensus_8977#0 AGGTAACAGCAATATGACTATGGTTAACTGTGATATATCGCTAAAGTGGACCGGTAAGCT 600
consensus_8977#1 AGGTAACAGCAATATGACTATGGTTAACTGT----------------------------- 566
consensus_8977#2 ------------------------------------------------------------
consensus_8977#0 TGTGGAGAAGAGTGGCCAACAATTTTACCAAGTCGACAAGTTTAAGGTGCACTTCGACAC 660
consensus_8977#1 ------------------------------------------------------------
consensus_8977#2 ------------------------------------------------------------
consensus_8977#0 CAGCCGGTTCTACATGGACTTTTCGAACCTGTTCAACGGTGATAAGGCGCTTGGCGATAA 720
consensus_8977#1 ------------------------------------------------------------
consensus_8977#2 ------------------------------------------------------------
consensus_8977#0 TATGAATGTGTTCCTGAATGATAACTGGCAGGACATCCTAAAGGAACTGAAGCCTGCGAT 780
consensus_8977#1 ------------------------------------------------------------
consensus_8977#2 ------------------------------------------------------------
consensus_8977#0 ATCAGCGGCATTTACAAAGATTTTCCAGGCTGTTGTTAGCAACGTTTTCAACAAAGTGCC 840
consensus_8977#1 ------------------------------------------------------------
consensus_8977#2 ------------------------------------------------------------
consensus_8977#0 TTACAACGAGCTTTTTCTCGCTTAAGTGGGGAATGGGGTCTACTATAAATACATTAGATA 900
consensus_8977#1 ------------------------------------------------------------
consensus_8977#2 ------------------------------------------------------------
consensus_8977#0 ACTAAGAAACATTTGGAAGATGATATTATGTGCAAT 936
consensus_8977#1 ------------------------------------
consensus_8977#2 ------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||