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Anopheles gambiae
cluster # 9008 cluster # 9008       Sequences # 13       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9008#0 length = 928 sequences # 1  
consensus_9008#1 length = 821 sequences # 11  
consensus_9008#2 length = 509 sequences # 1  

consensusID : consensus_9008#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 928
fasta sequence
                              [CAGAATNCCCGCAGGTTAAGACAAGGTAGAATAGACACCAGTGTAGTGTCAGTAGCTAGCGAGCAACAAGTGTACAACTCTAGTAGCCTACTAACCTATATATACGTGTATCCGGTGTGTGGCTTTGAGCTTCCTCCACATCTATACGCACCCGTACTACATACATACATGAAGATCTTACATATGTGCTTGGCCGTGGCAGTATGGCAGTCGGCAGCCGGTGCCGACCGTCGAAGGGGGCAAAGTGCCGAAGCCGAGGCGTAACTGGGAACTATAGGGGTACCGGAACACGAGTACGTCCTATCAGCCAGNCGGCGGTGACTTTGGGCGTGGNCAACGACTNTACGGGCGGACTTGCACAACGGCAGTGAGNGAGCACGTGAAGCATAGTAGACGATACGTAGAACGCAAGGTACCCGGTACCCGTACCCGGTCGAGTGTGCACCGAAAGCATTGTTGGCCCGNGCTAGAGGCAGCGGTAGAAAGNGTAACCCGTTACACCCGGGTACGCAGGATTAGGCANGACAGAAGTGTACCCGGTGNTAACGTTGNGAGAAGANAGGTTGACCGGGTACGAGTTAGGTACCGAAGAAAGTAACGTGTACCATTGGTTAGACGCCGGCACCNGATTNACCCCGCTTAACCGCCCGGNGCTAGANAAGAGTACCCACCGGCGGTTACCCAAAAAGTAGGACTNGGNAGCCCCCCGCTANCTAATAACCCCAAAGCCAAAAGTGGTGCACGGNTTAACACTGGTTCCCNCANGCGGTTTGGCCCCCGGACNGAGATCCNCTGGAGTAACCCNCCAGTGGNTTGGCTATTTGTTATGGTGCGAANGGAAACAGNCCCACCGGAGNTTCATCCCCCGGAGGTTTACTTNACACAATTACCACACAGGACACAANTGCACCGTCAGCTTGGATAAACC]

[+] EMBL AL694518             [CAGAATNCCCGCAGGTTAAGACAAGGTAGAATAGACACCAGTGTAGTGTCAGTAGCTAGCGAGCAACAAGTGTACAACTCTAGTAGCCTACTAACCTATATATACGTGTATCCGGTGTGTGGCTTTGAGCTTCCTCCACATCTATACGCACCCGTACTACATACATACATGAAGATCTTACATATGTGCTTGGCCGTGGCAGTATGGCAGTCGGCAGCCGGTGCCGACCGTCGAAGGGGGCAAAGTGCCGAAGCCGAGGCGTAACTGGGAACTATAGGGGTACCGGAACACGAGTACGTCCTATCAGCCAGNCGGCGGTGACTTTGGGCGTGGNCAACGACTNTACGGGCGGACTTGCACAACGGCAGTGAGNGAGCACGTGAAGCATAGTAGACGATACGTAGAACGCAAGGTACCCGGTACCCGTACCCGGTCGAGTGTGCACCGAAAGCATTGTTGGCCCGNGCTAGAGGCAGCGGTAGAAAGNGTAACCCGTTACACCCGGGTACGCAGGATTAGGCANGACAGAAGTGTACCCGGTGNTAACGTTGNGAGAAGANAGGTTGACCGGGTACGAGTTAGGTACCGAAGAAAGTAACGTGTACCATTGGTTAGACGCCGGCACCNGATTNACCCCGCTTAACCGCCCGGNGCTAGANAAGAGTACCCACCGGCGGTTACCCAAAAAGTAGGACTNGGNAGCCCCCCGCTANCTAATAACCCCAAAGCCAAAAGTGGTGCACGGNTTAACACTGGTTCCCNCANGCGGTTTGGCCCCCGGACNGAGATCCNCTGGAGTAACCCNCCAGTGGNTTGGCTATTTGTTATGGTGCGAANGGAAACAGNCCCACCGGAGNTTCATCCCCCGGAGGTTTACTTNACACAATTACCACACAGGACACAANTGCACCGTCAGCTTGGATAAACC]


>consensus_9008#0 CAGAATNCCCGCAGGTTAAGACAAGGTAGAATAGACACCAGTGTAGTGTCAGTAGCTAGC GAGCAACAAGTGTACAACTCTAGTAGCCTACTAACCTATATATACGTGTATCCGGTGTGT GGCTTTGAGCTTCCTCCACATCTATACGCACCCGTACTACATACATACATGAAGATCTTA CATATGTGCTTGGCCGTGGCAGTATGGCAGTCGGCAGCCGGTGCCGACCGTCGAAGGGGG CAAAGTGCCGAAGCCGAGGCGTAACTGGGAACTATAGGGGTACCGGAACACGAGTACGTC CTATCAGCCAGNCGGCGGTGACTTTGGGCGTGGNCAACGACTNTACGGGCGGACTTGCAC AACGGCAGTGAGNGAGCACGTGAAGCATAGTAGACGATACGTAGAACGCAAGGTACCCGG TACCCGTACCCGGTCGAGTGTGCACCGAAAGCATTGTTGGCCCGNGCTAGAGGCAGCGGT AGAAAGNGTAACCCGTTACACCCGGGTACGCAGGATTAGGCANGACAGAAGTGTACCCGG TGNTAACGTTGNGAGAAGANAGGTTGACCGGGTACGAGTTAGGTACCGAAGAAAGTAACG TGTACCATTGGTTAGACGCCGGCACCNGATTNACCCCGCTTAACCGCCCGGNGCTAGANA AGAGTACCCACCGGCGGTTACCCAAAAAGTAGGACTNGGNAGCCCCCCGCTANCTAATAA CCCCAAAGCCAAAAGTGGTGCACGGNTTAACACTGGTTCCCNCANGCGGTTTGGCCCCCG GACNGAGATCCNCTGGAGTAACCCNCCAGTGGNTTGGCTATTTGTTATGGTGCGAANGGA AACAGNCCCACCGGAGNTTCATCCCCCGGAGGTTTACTTNACACAATTACCACACAGGAC ACAANTGCACCGTCAGCTTGGATAAACC



consensusID : consensus_9008#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 11
consensus length = 821
fasta sequence
                              [GCAGAATTCNCGCACGAGG-AGACACAGGTCGAATCGACAACCAGTGTAGTGTCAGTAGCTAGCGAGCAACAAGTGTACAACTCTAGTGCCTCTAACCTTTATCGTGTCTCCGTGTGTGGCTTTGAGCTTCCTCCACATCTATACGCACCCGTCTCATCATAATGAAGATCTTCATTGTGCTGGCCGTGGCGTTGGCAGTCGCAGCCGGTGCCGCCGTCGAAGGGGGCAAGGCGAAGCGAGGCGTCTGGGACTTTGGGTCCGGCCACGAGTCGTCCTTCAGCAGCGGCGGTGACTTTGGCGGGCACGACTTCGGCGGACTGCACAAGGAGGAGGAGCACGTGAAGCATGTGACGATCGTGAAGAAGGTCCCGGTCCCGTACCCGGTCGAGGTGACGAAGCATGTGCCGGTGGAGGTGAAGGTACCGTACCCGGTCGAGGTGGAGAAGAAGGTCCCGGTGTACGTGGAGAAGAAGGTGCCGGTCGTGGTGGAAAAGAAGGTCCATGTGGACCGGCCCGTCCCGTACCCGGTGAAGGTCCCGGTCAA-GGTGCCCG-TCATCCACAAGGAGTA-CGTCGAGGTGCC-GAAACCGTA-CCCGGTGCATGTGGAGAAGCCGGTCCCGGTCTACATCAAGAAGCCGGTGTACATCGAGAAGACGGTGCCCGTTTCGATCCACATCAAGAAGAAGTCCCACTGGCACTAAGCCGCGAGAANGGGCGAGAAGTTCCTACTTTTGAGGGTTTTGGANGGTTAAGTTGTTGTAAATAAATAGACTCACTAGAGAGACAGATACGTACACTGTGCTCTGTCTGGCTCTGATAGACAT]

[+] EMBL BX468059             [GCAGAATTCNCGCACGAGGTAGACACAGGTCGAATCGACAACCAGTGTAGTGTCAGTAGCTAGCGAGCAACAAGTGTACAACTCTAGTGCCTCTAACCTTTATCGTGTCTCCGTGTGTGGCTTTGAGCTTCCTCCACATCTATACGCACCCGTCTCATCATAATGAAGATCTTCATTGTGCTGGCCGTGGCGTTGGCAGTCGCAGCCGGTGCCGCCGTCGAAGGGGGCAAGGCGAA CGAGGCGTCTGGGACTTTGGGTCCGGCCACGAGTCGTCCTTCAGCAGCGGCGGTGACTTTGGCGGGCACGACTTCGGCGGACTGCACAAGGAGGAGGAGCACGTGAAGCATGTGACGATCGTGAAGAAGGTCCCGGTCCCGTACCCGGTCGAGGTGACGAAGCATGTGCCGGTGGAGGTGAAGGTACCGTACCCGGTCGAGGTGGAGAAGAAGGTCCCGGTGTACGTGGAGAAGAAGGTGCCGGTCGTGGTCGAGAAGAAGGTCCATGTTGACCGGCCCGTCCCGTACCCGGTGAAGGTCCCGGTCAAGGGTGCCCG TCATCCACAAGGAGTA CGTCGAGGTGCCGGAAACCGTA CCCGGTGC                                                                                                                                                                                                                                ]
[+] EMBL AL934924             [              CGAGG AGACACAGGTCGAATCGAC ACCAGTGTAGTGTCAGTAGCTAGCGAGCAACAAGTGTACAACTCTAGTGCCTCTAACCTTTATCGTGTCTCCGTGTGTGGCTTTGAGCTTCCTCCACATCTATACGCACCCGTCTCATCATAATGAAGATCTTCATTGTGCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL BX620798             [                    AGACACAGGTCGAATCGACAACCANTGTAGTGTCAGTAGCTAGCGAGCAACAAGTGTACAACTCTAGTGCCTCTAACCTTTATCGTGTCTCCGTGTGTGGCTTTGAGCTTCCTCCACATCTATACGCACCCGTCTCATCATAATGAAGATCTTCATTGTGCTGGCCGTGGCGTTGGCAGTCGCAGCCGGTGCCGCCGTCGAAGGGGGCAAGGCGAAGCGAGGCGTCTGGGACTTTGGGTCCGGCCACGAGTCGTCCTTCAGCAGCGGCGGTGACTTTGGCGGGCACGACTTCGGCGGACTGCACAAGGAGGAGGAGCACGTGAAGCATGTGACGATCGTGAAGAAGGTCCCGGTCCCGTACCCGGTCGAGGTGACGAAGCATGTGCCGGTGGAGGTGAAGGTACCGTACCCGGTCGAGGTGGAGAAGAAGGTCCCGGTGTACGTGGAGAAGAAGGTGCCGGTCGTGGTGGAAAAGAAGGTCCATGTGGACCGGCCCGTCCCGTACCCGGTGAAGGTCCCGGTCAA GGTGCCCG TCATCCACAAGGAGTA CGTCGAGGTGCC GAAACCGTA CCCGGTGCATGTGGAG                                                                                                                                                                                                                        ]
[+] EMBL BX625037             [                                 ATCGACAACCAGTGTAGTGTCAGTAGCTAGCGAGCAACAAGTGTACAACTCTAGTGCCTCTAACCTTTATCGTGTCTCCGTGTGTGGCTTTGAGCTTCCTCCACATCTATACGCACCCGTCTCATCATAATGAAGATCTTCATTGTGCTGGCCGTGGCGTTGGCAGTCGCAGCCGGTGCCGCCGTCGAAGGGGGCAAGGCGAAGCGAGGCGTCTGGGACTTTGGGTCCGGCCACGAGTCGTCCTTCAGCAGCGGCGGTGACTTTGGCGGGCACGACTTCGGCGGACTGCACAAGGAGGAGGAGCACGTGAAGCATGTGACGATCGTGAAGAAGGTCCCGGTCCCGTACCCGGTCGAGGTGACGAAGCATGTGCCGGTGGAGGTGAAGGTACCGTACCCGGTCGAGGTGGAGAAGAAGGTCCCGGTGTACGTGGAGAAGAAGGTGCCGGTCGTGGTCGAGAAGAAGGTCCATGTTGACCGGCCCGTCCCGTACCCGGTGAAGGTCCCGGTCAA GGTGCCCG TCATCCACAAGGAGTA CGTCGAGGTGCC GAAACCGTA CCCG                                                                                                                                                                                                                                    ]
[+] EMBL BX620936             [                                 ATCGACAACCAGTGTAGTGTCAGTAGCTAGCGAGCAACAAGTGTACAACTCTAGTGCCTCTAACCTTTATCGTGTCTCCGTGTGTGGCTTTGAGCTTCCTCCACATCTATACGCACCCGTCTCATCATAATGAAGATCTTCATTGTGCTGGCCGTGGCGTTGGCAGTCGCAGCCGGTGCCGCCGTCGAAGGGGGCAAGGCGAAGCGAGGCGTCTGGGACTTTGGGTCCGGCCACGAGTCGTCCTTCAGCAGCGGCGGTGACTTTGGCGGGCACGACTTCGGCGGACTGCACAAGGAGGAGGAGCACGTGAAGCATGTGACGATCGTGAAGAAGGTCCCGGTCCCGTACCCGGTCGAGGTGACGAAGCATGTGCCGGTGGAGGTGAAGGTACCGTACCCGGTCGAGGTGGAGAAGAAGGTCCCGGTGTACGTGGAGAAGAAGGTGCCGGTCGTGGTGGAAAAGAAGGTCCATGTGGACCGGCCCGTCCCGTACCCGGTGAAGGTCCCGGTCAA GGTGCCCG TCATCCACAAGGAGTA CGTCGAGGTGCC GAAACCGTA CCCGGTGCATGTGGAGAAGCCGGTCCCGGTCTACATCAAGAAGCCGGTGTACATCGAGAAGACGGTGCCCGTTTCG                                                                                                                                                            ]
[+] EMBL BX620553             [                                                        TAGCTAGCGAGCAACAAGTGTACAACTCTAGTGCCTCTAACCTTTATCGTGTCTCCGTGTGTGGCTTTGAGCTTCCTCCACATCTATACGCACCCGTCTCATCATAATGAAGATCTTCATTGTGCTGGCCGTGGCGTTGGCAGTCGCAGCCGGTGCCGCCGTCGAAGGGGGCAAGGCGAAGCGAGGCGTCTGGGACTTTGGGTCCGGCCACGAGTCGTCCTTCAGCAGCGGCGGTGACTTTGGCGGGCACGACTTCGGCGGACTGCACAAGGAGGAGGAGCACGTGAAGCATGTGACGATCGTGAAGAAGGTCCCGGTCCCGTACCCGGTCGAGGTGACGAAGCATGTGCCGGTGGAGGTGAAGGTACCGTACCCGGTCGAGGTGGAGAAGAAGGTCCCGGTGTACGTGGAGAAGAAGGTGCCGGTCGTGGTGGAAAAGAANGTCCATGTGGACCGGCCCGTNCCGTACCCGGTGAAGGTCCCGGTCAA GGTGCCCGTTCATCCACAAGGAGTA CGTCGAGGTGCC GAAACCGTACCCCGGTGCATGTGGAGAAGCCG                                                                                                                                                                                                                  ]
[+] EMBL BX623062             [                                                         AGCTAGCGAGCAACAAGTGTACAACTCTAGTGCCTCTAACCTTTATCGTGTCTCCGTGTGTGGCTTTGAGCTTCCTCCACATCTATACGCACCCGTCTCATCATAATGAAGATCTTCATTGTGCTGGCCGTGGCGTTGGCAGTCGCAGCCGGTGCCGCCGTCGAAGGGGGCAAGGCGAAGCGAGGCGTCTGGGACTTTGGGTCCGGCCACGAGTCGTCCTTCAGCAGCGGCGGTGACTTTGGCGGGCACGACTTCGGCGGACTGCACAAGGAGGAGGAGCACGTGAAGCATGTGACGATCGTGAAGAAGGTCCCGGTCCCGTACCCGGTCGAGGTGACGAAGCATGTGCCGGTGGAGGTGAAGGTACCGTACCCGGTCGAGGTGGAGAAGAAGGTCCCGGTGTACGTGGAGAAGAAGGTGCCGGTCGTGGTGGAAAAGAAGGTCCATGTGGACCGGCCCGTCCCGTACCCGGTGAAGGTCCCGGTCAA GGTGCCCG TCATCCACAAGGAGTA CGTCGAGGTGCC GAAACCGTA CCCGGTGCATGTGGAGAAGCCGGTCCCGGTCTACATCAAGAAGCCGGTGTACATCGAGAAGACGGTGCCCGTTTCGATCCACATCAAGAAGAAGTCCCACTGGCACTAAGCCGCGAGAANGGGCGAGAAGTTCCTACTTTTGAGGGTTTTGGANGGTTAAGTTGTTGTAAATAAATAGACTCACTAGAGAGACAGATACGTACACTGTGCTCTGTCTGGCTCTGATAGACAT]
[+] EMBL BX620746             [                                                                  GCAACAAGTGTACAACTCTAGTGCCTCTAACCTTTATCGTGTCTCCGTGTGTGGCTTTGAGCTTCCTCCACATCTATACGCACCCGTCTCATCATAATGAAGATCTTCATTGTGCTGGCCGTGGCGTTGGCAGTCGCAGCCGGTGCCGCCGTCGAAGGGGGCAAGGCGAAGCGAGGCGTCTGGGACTTTGGGTCCGGCCACGAGTCGTCCTTCAGCAGCGGCGGTGACTTTGGCGGGCACGACTTCGGCGGACTGCACAAGGAGGAGGAGCACGTGAAGCATGTGACGATCGTGAAGAAGGTCCCGGTCCCGTACCCGGTCGAGGTGACGAAGCATGTGCCGGTGGAGGTGAAGGTACCGTACCCGGTCGAGGTGGAGAAGAANGTCCCGGTGTACGTGGAGAAGAACGTGCCGGTCGTGGTGGAAAAGAAGGTCCCGGTGGACCGGCCCGTCCCGTACCCGGTGAAGGTCCCGGTCAA GGTGCCCG TCATCCACAAGGAGTACCTTNGAGGTGCC GAAACCCTA CCCGGTGCATGTGGAGAAGCCGGTCCCGGTCT                                                                                                                                                                                                        ]
[+] EMBL BX626332             [                                                                                         CCTCTAACCTTTATCGTGTCTCCGTGTGTGGCTTTGAGCTTCCTCCACATCTATACGCACCCGTCTCATCATAATGAAGATCTTCATTGTGCTGGCCGTGGCGTTGGCAGTCGCAGCCGGTGCCGCCGTCGAAGGGGGCAAGGCGAAGCGAGGCGTCTGGGACTTTGGGTCCGGCCACGAGTCGTCCTTCAGCAGCGGCGGTGACTTTGGCGGGCACGACTTCGGCGGACTGCACAAGGAGGAGGAGCACGTGAAGCATGTGACGATCGTGAAGAAGGTCCCGGTCCCGTACCCGGTCGAGGTGACGAAGCATGTGCCGGTGGAGGTGAAGGTACCGTACCCGGTCGAGGTGGAGAAGAAGGTCCCGGTGTACGTGGAGAAGAAGGTGCCGGTCGTGGTCGANAAGAANGTCCATGTTGACCGGCCCGTCCCGTACCCGGTGAAGGTCCCGGTCAA GGTGCCCG TCATCCACAAGGAGTA CGTCGAGGTGCC GAAACCGTA CCCGGTGCATGTGGAGAAGCCGGTCCCGGTCTACA                                                                                                                                                                                                     ]
[+] EMBL BX627482             [                                                                                         CCTCTAACCTTTATCGTGTCTCC  GTGTGGCTTTGAGCTTCCTCCACATCTATACGCACCCGTCTCATCATAATGAAGATCTTCATTGTGCTGGCCGTGGCGTTGGCAGTCGCAGCCGGTGCCGCCGTCGAAGGGGGCAAGGCGAAGCGAGGCGTCTGGGACTTTGGGTCCGGCCACGAGTCGTCCTTCAGCAGCGGCGGTGACTTTGGCGGGCACGACTTCGGCGGACTGCACAAGGAGGAGGAGCACGTGAAGCATGTGACGATCGTGAAGAAGGTCCCGGTCCCGTACCCGGTCGAGGTGACGAAGCATGTGCCGGTGGAGGTGAAGGTACCGTACCCGGTCGAGGTGGAGAAGAAGGTCCCGGTGTACGTGGAGAAGAAGGTGCCGGTCGTGGTGGAAAAGAAGGTCCATGTGGACCGGCCCGTCCCGTACCCGGTGAAGGTCCCGGTCAA GGTGCCCG TCATCCACAAGGAGTA CGTCGAGGTGCC GAAACCGTA CCCGGTGCATGTGGAGAAGCCGGTCCCGGTCTACATCAAGAAGCCGGTGTACATCGAGAAGACGGTGCCCGTTTCGATCCACATCAAGAAGAAGTCCCACTGGCACTAAGCCGCGAGAAAGGGCGAGA                                                                                                        ]
[+] EMBL BX622765             [                                                                                                                                                                                                                          CGAAGGGGGCAAGGCGAAGCGGGGCGTCTGGGACTTTGGTTCCGGCCACGAGTCGTCCTTCAGCAGCGGCGGTGACTTTGGCGGGCACGACTTCGGCGGACTCCACAAGGAGGAGGAGCACGTGAAGCATGTGACGATCGTGAAGAAGGTCCCGGTCCCGTACCCGGTCGAGGTGACGAAGCATGTGCCGGTGGAGGTGAAGGTACCGTACCCGGTCGAGGTGGAGAAGAAGGTCCCGGTGTACGTGGAGAAGAAGGTGCCGGTCGTGGTCGAGAAGAAGGTCCATGTGGACCGGCCCGTCCCATATCCGGTGAAGGTCCCGGTCAA GGTGCCCG TCATCCACAANGAGTA CGTCGAGGTGCC GAAACCGTA CC                                                                                                                                                                                                                                      ]


>consensus_9008#1 GCAGAATTCNCGCACGAGGAGACACAGGTCGAATCGACAACCAGTGTAGTGTCAGTAGCT AGCGAGCAACAAGTGTACAACTCTAGTGCCTCTAACCTTTATCGTGTCTCCGTGTGTGGC TTTGAGCTTCCTCCACATCTATACGCACCCGTCTCATCATAATGAAGATCTTCATTGTGC TGGCCGTGGCGTTGGCAGTCGCAGCCGGTGCCGCCGTCGAAGGGGGCAAGGCGAAGCGAG GCGTCTGGGACTTTGGGTCCGGCCACGAGTCGTCCTTCAGCAGCGGCGGTGACTTTGGCG GGCACGACTTCGGCGGACTGCACAAGGAGGAGGAGCACGTGAAGCATGTGACGATCGTGA AGAAGGTCCCGGTCCCGTACCCGGTCGAGGTGACGAAGCATGTGCCGGTGGAGGTGAAGG TACCGTACCCGGTCGAGGTGGAGAAGAAGGTCCCGGTGTACGTGGAGAAGAAGGTGCCGG TCGTGGTGGAAAAGAAGGTCCATGTGGACCGGCCCGTCCCGTACCCGGTGAAGGTCCCGG TCAAGGTGCCCGTCATCCACAAGGAGTACGTCGAGGTGCCGAAACCGTACCCGGTGCATG TGGAGAAGCCGGTCCCGGTCTACATCAAGAAGCCGGTGTACATCGAGAAGACGGTGCCCG TTTCGATCCACATCAAGAAGAAGTCCCACTGGCACTAAGCCGCGAGAANGGGCGAGAAGT TCCTACTTTTGAGGGTTTTGGANGGTTAAGTTGTTGTAAATAAATAGACTCACTAGAGAG ACAGATACGTACACTGTGCTCTGTCTGGCTCTGATAGACAT



consensusID : consensus_9008#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 509
fasta sequence
                              [CCGCGGACGCGTGGGCGGACGCGTGGGCGATCGTGAAGAAGGTCCCGGTCCCGTACCCGGTCGAGGTGACGAAGCATGTGCCGGTGGAGGTGAAGGTACCGTACCCGGTCGAGGTGGAGAAGAAGGTCCCGGTGTACGTGGAGAAGAAGGTGCCGGTCGTGGTCGAGAAGAAGGTCCATGTGGACCGGCCCGTCCCATATCCGGTGAAGGTCCCGGTCAAGGTGCCCGTCATCCACAAGGAGTACGTCGAGGTGCCGAAACCGTACCCGGTGCATGTGGAGAAGCCGGTCCCGGTCTACATCAAGAAGCCGGTGTACATCGAAAAGACGGTGCCCGTTTCGATCCACATCAAGAAGAAGTCCCACTGGCACTGAGCCGCGAGAAGGGGCGAGAAGTTCCTACTTTTGAGGTTTTGGAGGGTTAAGTTGTTGTAAATAAATAGACTCACTAGAGAGAGAGAGATACGTACACCGTGCTCTGTCTGGCTCTGATAGACATGGTGAAATATT]

[+] EMBL BM596175             [CCGCGGACGCGTGGGCGGACGCGTGGGCGATCGTGAAGAAGGTCCCGGTCCCGTACCCGGTCGAGGTGACGAAGCATGTGCCGGTGGAGGTGAAGGTACCGTACCCGGTCGAGGTGGAGAAGAAGGTCCCGGTGTACGTGGAGAAGAAGGTGCCGGTCGTGGTCGAGAAGAAGGTCCATGTGGACCGGCCCGTCCCATATCCGGTGAAGGTCCCGGTCAAGGTGCCCGTCATCCACAAGGAGTACGTCGAGGTGCCGAAACCGTACCCGGTGCATGTGGAGAAGCCGGTCCCGGTCTACATCAAGAAGCCGGTGTACATCGAAAAGACGGTGCCCGTTTCGATCCACATCAAGAAGAAGTCCCACTGGCACTGAGCCGCGAGAAGGGGCGAGAAGTTCCTACTTTTGAGGTTTTGGAGGGTTAAGTTGTTGTAAATAAATAGACTCACTAGAGAGAGAGAGATACGTACACCGTGCTCTGTCTGGCTCTGATAGACATGGTGAAATATT]


>consensus_9008#2 CCGCGGACGCGTGGGCGGACGCGTGGGCGATCGTGAAGAAGGTCCCGGTCCCGTACCCGG TCGAGGTGACGAAGCATGTGCCGGTGGAGGTGAAGGTACCGTACCCGGTCGAGGTGGAGA AGAAGGTCCCGGTGTACGTGGAGAAGAAGGTGCCGGTCGTGGTCGAGAAGAAGGTCCATG TGGACCGGCCCGTCCCATATCCGGTGAAGGTCCCGGTCAAGGTGCCCGTCATCCACAAGG AGTACGTCGAGGTGCCGAAACCGTACCCGGTGCATGTGGAGAAGCCGGTCCCGGTCTACA TCAAGAAGCCGGTGTACATCGAAAAGACGGTGCCCGTTTCGATCCACATCAAGAAGAAGT CCCACTGGCACTGAGCCGCGAGAAGGGGCGAGAAGTTCCTACTTTTGAGGTTTTGGAGGG TTAAGTTGTTGTAAATAAATAGACTCACTAGAGAGAGAGAGATACGTACACCGTGCTCTG TCTGGCTCTGATAGACATGGTGAAATATT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9008#1      GCAGAATTCNCGCACGAGGAGACACAGGTCGAATCGACAACCAGTGTAGTGTCAGTAGCT 60
consensus_9008#2      ------------------------------------------------------------
consensus_9008#0      ------------------------------------------------------------
                                                                                  

consensus_9008#1      AGCGAGCAACAAGTGTACAACTCTAGTGCCTCTAACCTTTATCGTGTCTCCGTGTGTGGC 120
consensus_9008#2      ------------------------------------------------------------
consensus_9008#0      --------------CAGAATNCCCGCAGGTTAAGACAAGGTAGAATAGACACCAGTGTAG 46
                                                                                  

consensus_9008#1      TTTGAGCTTCCTCCACATCTATACGCACCCGTCTCATCATAATGAAGATCTTCATTGTGC 180
consensus_9008#2      ------------------------------------------------------------
consensus_9008#0      TGTCAGTAGCTAGCGAGCAACAAGTGTACAACTCTAGTAGCCTACTAACCTATATATACG 106
                                                                                  

consensus_9008#1      TGGCCGTGGCGTTGGCAGTCGCAGCCGGTGCCGCCGTCGAAGGGGGCAAGGCGAAGCGAG 240
consensus_9008#2      ------------------------------------------------------------
consensus_9008#0      TGTATCCGGTGTGTGGCTTTGAGCTTCCTCCACATCTATACGCACCCGTACTACATACAT 166
                                                                                  

consensus_9008#1      GCGTCTGGGACTTTGGGTCCGGCCACGAGTCGTCCTTCAGCAGCGGCGGTGACTTTGGCG 300
consensus_9008#2      ------------------------------------------------------------
consensus_9008#0      ACATGAAGATCTTACATATGTGCTTGGCCGTGGCAGTATGGCAGTCGGCAGCCGGTGCCG 226
                                                                                  

consensus_9008#1      GGCACGACTTCGGCGGACTGCACAAGGAGGAGGAGCACGTGAA-GCATGTGACGATCGTG 359
consensus_9008#2      ------------------------CCGCGGACGCGTGGGCGGACGCGTG-GGCGATCGTG 35
consensus_9008#0      ACCGTCGAAGGGGGCAAAGTGCCGAAGCCGAGGCGTAACTGGGAACTATAGGGGTACCGG 286
                                                *  ** * *     *    *    *  *  *  *

consensus_9008#1      AAGAAGGTCCCGGTCCCGTACCCGGTCGA-GGTGACGAAGCATGTG-CCGGTGGAGGTGA 417
consensus_9008#2      AAGAAGGTCCCGGTCCCGTACCCGGTCGA-GGTGACGAAGCATGTG-CCGGTGGAGGTGA 93
consensus_9008#0      AACACGAGTACGTCCTATCAGCCAGNCGGCGGTGACTTTGGGCGTGGNCAACGACTNTAC 346
                      ** * *    **  *    * ** * **  ******   *   ***  *   *    *  

consensus_9008#1      AGGTAC-CGTACCCGGTCGAGGTGGAGAAGAAGGT----CCCGGTGTACGTGGAGAAGAA 472
consensus_9008#2      AGGTAC-CGTACCCGGTCGAGGTGGAGAAGAAGGT----CCCGGTGTACGTGGAGAAGAA 148
consensus_9008#0      GGGCGGACTTGCACAACGGCAGTGAGNGAGCACGTGAAGCATAGTAGACGATACGTAGAA 406
                       **    * * * *    *  ***    ** * **    *   **  ***    * ****

consensus_9008#1      GGTGCCGGTCGTGGT-GGAAAAGAAGGTCCA-TGTGGACCGGCC-CGTCCCGTACCCGG- 528
consensus_9008#2      GGTGCCGGTCGTGGT-CGAGAAGAAGGTCCA-TGTGGACCGGCC-CGTCCCATATCCGG- 204
consensus_9008#0      CGCAAGGTACCCGGTACCCGTACCCGGTCGAGTGTGCACCGAAAGCATTGTTGGCCCGNG 466
                       *    *  *  ***      *   **** * **** ****    * *       ***  

consensus_9008#1      -TGAAGGTCCCGGTC-AAGGTG---CCCGTCATCCACAAGGA-GTACGTCGAGGTGC--C 580
consensus_9008#2      -TGAAGGTCCCGGTC-AAGGTG---CCCGTCATCCACAAGGA-GTACGTCGAGGTGC--C 256
consensus_9008#0      CTAGAGGCAGCGGTAGAAAGNGTAACCCGTTACACCCGGGTACGCAGGATTAGGCANGAC 526
                       *  ***   ****  ** * *   ***** *  * *  * * * * *   ***     *

consensus_9008#1      GAAACCGTACCCGGTGC--ATGT--GGAGAAG---------CCGGTCCCGGTCTACATC- 626
consensus_9008#2      GAAACCGTACCCGGTGC--ATGT--GGAGAAG---------CCGGTCCCGGTCTACATC- 302
consensus_9008#0      AGAAGTGTACCCGGTGNTAACGTTGNGAGAAGANAGGTTGACCGGGTACGAGTTAGGTAC 586
                        **  **********   * **   ******         ****   **   **  *  

consensus_9008#1      --AAGAAGCCGGTGTACATCG------AGAAGACGGTGCCCGTTTCGATCCACATCA--- 675
consensus_9008#2      --AAGAAGCCGGTGTACATCG------AAAAGACGGTGCCCGTTTCGATCCACATCA--- 351
consensus_9008#0      CGAAGAAAGTAACGTGTACCATTGGTTAGACGCCGGCACCNGATTNACCCCGCTTAACCG 646
                        *****      **  * *       * * * ***  ** * **    ** * * *   

consensus_9008#1      -----------AGAAGAAGTCCCACTGGCACTAAGCCGCGAGAANGGGCGAGAAG--TTC 722
consensus_9008#2      -----------AGAAGAAGTCCCACTGGCACTGAGCCGCGAGAAGGGGCGAGAAG--TTC 398
consensus_9008#0      CCCGGNGCTAGANAAGAGTACCCACCGGCGGTTACCCAAAAAGTAGGACTNGGNAGCCCC 706
                                 * ****   ***** ***  * * **   *    ** *  *       *

consensus_9008#1      CTACTTTTGAGGGTTTTGGANGGTTAAGTTGTTGTA--AATAAATAG-ACTCACTAGAGA 779
consensus_9008#2      CTACTTTTGAGG-TTTTGGAGGGTTAAGTTGTTGTA--AATAAATAG-ACTCACTAGAGA 454
consensus_9008#0      CCGCTANCTAATAACCCCAAAGCCAAAAGTGGTGCACGGNTTAACACTGGTTCCCNCANG 766
                      *  **    *         * *   **  ** ** *    * ** *    *  *   *  

consensus_9008#1      GACAG--ATACGTACACTGTGCTCTGTCTGG-----CTCTGATAGACAT----------- 821
consensus_9008#2      GAGAGAGATACGTACACCGTGCTCTGTCTGG-----CTCTGATAGACATGGTGAAATATT 509
consensus_9008#0      CGGTTTGGCCCCCGGACNGAGATCCNCTGGAGTAACCCNCCAGTGGNTTGGCTATTTGTT 826
                                *    ** * * **     *      *    *  *   *           

consensus_9008#1      ------------------------------------------------------------
consensus_9008#2      ------------------------------------------------------------
consensus_9008#0      ATGGTGCGAANGGAAACAGNCCCACCGGAGNTTCATCCCCCGGAGGTTTACTTNACACAA 886
                                                                                  

consensus_9008#1      ------------------------------------------
consensus_9008#2      ------------------------------------------
consensus_9008#0      TTACCACACAGGACACAANTGCACCGTCAGCTTGGATAAACC 928
                                                                




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)