|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9015#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1201 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGGCGACATCGAAACGCGTAGTTTTGCAGAAAGTTTACAATAAAAGCAGCTAAAAATGGCGGAAAGCGGTGCGGATGGAGAGCCGAAGCGGGAGTTTGTGGTGCCGGAAAAGCTGATCAAATCACCGATGGATATGGAGCTGTGGCAAATGTCGGAATGCTATTACGATCTGATCGGCTTCATCAGCAGCATGTCGGTAGCGTTGCAGGGTACGCGCAACAGTCAGGAGGTTGCGATTCCACCTGTCGTGGAGAAGCTAATGCAAGCGCTGGACCGGTTGGAGCAGCTGGCAATCGAAACGCCCCCGATCGATCAGCCGGCCCGGTTCGGTAATGTTGCGTTCAAAAGCTGGTTCC-A-AAGATGCAGTCGGAAAGCATGCAGCTTGTTAGCGATGCACTGCCGGACACGCTGAAGGATGCGGCCAAGGAGCTGTGCGTGTACTTTGTCGATTGTTTCGGGAATCCGACGCGCATTGATTACGGCACGGGGCATGAGCTGGCGTTCGTTATGTTTCTGATGTGCTTGTTCAAGACCGGGGCTGTTGAGCGGAAAGATGAGGTTGCTGTCGGGTTGAAGTTGTTCCAGAAGTACATCATCCTGGCAAGAAAGCTGCAGGTAACGTACCGAATGGAACCGGCCGGCAGCCACGGTGTGTGGAGTTTGGACGACTTTCAGTTCGTGCCGTTCATCTGGGGCAGTGCGCAGCTGGCCGTAAACAGTCCGATCGAACCGGCCCAGTTCGTGGAGGAGAAATGGATTACCAAGTACAAGAAGGAGCTGATGTTCGTCGGGTGCATCGATTACATACAGCAGGTGAAGACGGGCCACTTTGCCGAACACTCGAATCAGCTGTGGAGCATCAGTGCCGTACCGCAGTGGTCAAAGATCTGTACCGGGCTGATTAAGATGTACCAGAAGGAGGTGCTGTCGAAGTTTCCCGTCATTCAGCACGTTTACTTCGGGTCTATACTTACACTGAAAACGGTCAAGCCGGGCACAATGTTGCCTAGTCCGCGGCTGGGAATGCTTCCGCGACAGCAGCAGCAGCGTCCGGCCCCGCCTGCAGTACCACCGCCACCCGCGTTTCCCGGTGGTGATGGAATGTGATAAAACTGTGTATTACACGCTATTAGTTTGTGATTGTTCAAAGAATAAAATGTTGAAATTATAAAAAAA]
[+] EMBL BM615973 [CCGCCCACGCGTCCGCCCACGCGTCCGGCGACATCGAAACGCGTAGTTTTGCAGAAAGTTTACAATAAAAGCGGCTAAAAATGGCGGAAAGCGGTGCGGATGGAGAGCCGAAGCGGGAGTTTGTGGTGCCGGAAAAGCTGATCAAATCACCGATGGATATGGAGCTGTGGCAAATGTCGGAATGCTATTACGATCTGATCGGCTTCATCAGCAGCATGTCGGTAGCGTTGCAGGGTACGCGCAACAGTCAGGAGGTTGCGATTCCACCTGTCGTGGAGAAGCTAATGCAAGCGCTGGACCGGTTGGAGCAGCTGGCAATCGAAACGCCCCCGATCGATCAGCCGGCCCGGTTCGGTAATGTTGCGTTCAAAAGCTGGTTCC A AAGATGCAGTCG ]
[+] EMBL BM589423 [ CCGCCCACGCGTCCG GAAACGCGTAGTTTTGCAGAAAGTTTACAATAAAAGCAGCTAAAAATGGCAGAAAGCTGTGCGGATGGAGAGCCGAAGCGGGAGTTTGTGGTGCCGGAAAAGCTGATCAAATCACCGATGGATATGGAGCTGTGGCAAATGTCGGAATGTTATTACGATCTGATCGGCTTCATCAGCAGCATGTCGGTAGCGGTGCAGGGTACGCGCAATAGTCAGGAGGTTGCGATTCCACCCGTCGTGGAGAAGCTAATGCAAGCGCTGGACCGGCTGGAGCAGCTGGCAATCGAAACGCCACCGATCGATCAGCCGGCCCGGTTCGGTAATGTTGCGTTCAAAAGCTGGTTCCAA AAGATGCAGTCGGAAAGCATGCAGCTTGTTAGCGACGCACTGCCGGACACGCTGAAGTATGCGGCGAAGGAGCTGTGCGTGTACTTTGTCGATTGTTTCGGGAATCCGACGCGCATTGATTACGGCACGGGGCATGAGCTGGCGTTCGTCATGTTTCTGATGTGTTTGTTCAAGACCGGGGCTGTAGAGCGGAAGGATGAGGTTGCTGTCGGGTTGAAGCTGTTCCAGAAGTACATCATCCTGGCAAGAAAGCTGCAGGTAACGTACCGAATGGAACCGGCCGGCAGCCACGGTGTGTG ]
[+] EMBL BM585514 [ CCGGCGCAATCGAAACGCGTAGTTTTGCAGAAAGTTTACAATAAAAGCAGCTAAAAATGGCGGAAAGCGGTGCGGATGGAGAGCCGAAGCGGGAGTTTGTGGTGCCGGAAAAGCTGATCAAATCACCGATGGATATGGAGCTGTGGCAAATGTCGGAATGCTATTACGATCTGATCGGCTTCATCAGCAGCATGTCGGTAGCGTTGCAGGGTACGCGCAACAGTCAGGAGGTTGCGATTCCACCTGTCGTGGAGAAGCTAATGCAAGCGCTGGACCGGTTGGAGCAGCTGGCAATCGAAACGCCCCCGATCGATCAGCCGGCCCGGTTCGGTAATGTTGCGTTCAAAAGCTGGTTCC AGAAGATGCAGTCGGAAAGCATGCAGCTTGTTAGCGATGCACTGCCGGACACGCTGAAGGATGCGGCCAAGGAGCTGTGCGTGTACTTTGTCGATTGTTTCGGGAATCCGACGCGCATTGATTACGGCACGGGGCATGAGCTGGCGTTCGTTATGTTTCTGATGTGCTTGTTCAAGACCGGGGCTGTTGAGCGGAAAGATGAGGTTGCTGTCGGGTTGAAGTTGTTCCAGAAGTACATCATCCTGGCAAGAAAGCTGCAGGTAACGTACCGAATGGAACCGGCCGGCAGCCACGGTGTGTGGAGTTT ]
[+] EMBL BX605558 [ GAAACGCGTAGTTTTGCAGAAAGTTTACAATAAAAGCAGCTAAAAATGGCGGAAAGCGGTGCGGATGGAGAGCCGAAGCGGGAGTTTGTGGTGCCGGAAAAGCTGATCAAATCACCGATGGATATGGAGCTGTGGCAAATGTCGGAATGCTATTACGATCTGATCGGCTTCATCAGCAGCATGTCGGTAGCGTTGCAGGGTACGCGCAACAGTCAGGAGGTTGCGATTCCACCTGTCGTGGAGAAGCTAATGCAAGCGCTGGACCGGTTGGAGCAGCTGGCAATCGAAACGCCCCCGATCGATCAGCCGGCCCGGTTCGGTAATGTTGCGTTCAAAAGCTGGTTCC AGAAGATGCAGTCGGAAAGCATGCAGCTTGTTAGCGATGCACTGCCGGACACGCTGAAGGATGCGGCCAAGGAGCTGTGCGTGTACTTTGTCGATTGTTTCGGGAATCCGACGCGCATTGATTACGGCACGGGGCATGAGCTGGCGTTCGTTATGTTTCTGATGTGCTTGTTCAAGACCGGGGCTGTTGAGCGGAAAGATGAGGTTGCTGTCGGGTTGAAGTTGTTCCAGAAGTACATCATCCTGGCAAGAAAGCTGCAGGTA ]
[+] EMBL BX623414 [ ATGGATATGGAGCTGTGGCAAATGTCGGAATGCTATTACGATCTGATCGGCTTCATCAGCAGCATGTCGGTAGCGTTGCAGGGTACGCGCAACAGTCAGGAGGTTGCGATTCCACCTGTCGTGGAGAAGCTAATGCAAGCGCTGGACCGGTTGGAGCAGCTGGCAATCGAAACGCCCCCGATCGATCAGCCGGCCCGGTTCGGTAATGTTGCGTTCAAAAGCTGGTTCCAA AAGATGCAGTCGGAAAGCATGCAGCTTGTTAGCGATGCACTGCCGGACACGCTGAAGGATGCGGCCAAGGAGCTGTGCGTGTACTTTGTCGATTGTTTCGGGAATCCGACGCGCATTGATTACGGCACGGGGCATGAGCTGGCCTTCGTTATGTTTCTGATGTGTTTGTTCAAGACCGGGGCTGTTGAGCGGAAAGATGAGGTTGCTGTCGGGTTGAAGCTATTCCAGAAGTACATCATCCTGGCAAGAAAGCTGCAGGTAACGTACCGAATGGAACCGGCCGGCAGCCACGGTGTGTGGAGTTTGGACGACTTTCAGTTCGTGCCGTTCATCTGGGGCAGTGCGCAGCTGGCCGTAAACAGTCCGATCGAACCGGCACAGTTCGTGGAGGAGAAATGGATTACCAAGTACAAGAAGGAGCTGATGTTCGTCGGGTGCATCGATTACATACAGCAGGTTAAGACGGGCCACTTTGCCGAACACTCGAATCAGCTGTGG ]
[-] EMBL CNS099CY [ AATCGAAACGCCACCGATCGATCAGCCGGCCCGGTTCGGTATTGTTGCGTTCAAAAGTTGGTTCCAA AAGATGCAATCGGAAAGCATGCAGCTTGTTAGCGATGCACTGCCGGACACGCTGAAGGATGCGGCCAAGGAGCTGTGCGTGTACTTTGTCGATTGTTTCGGGAATCCGACGCGCATTGATTACGGCACGGGGCATGGGCTGGCGTTCGTCATGTTTCTGATGTGTTTGTTCAAGACCGGGGCTGTAGAGCGGAAGGATGAGGTTGCTGTCGGGTTGAAGCTGTTCCAGAAGTACATCATCCTGGCAAGAAAGCTGCAGGTAACGTACCGAATGGAACCGGCCGGCAGCCACGGTGTGTGGAGTTTGGACGACTTTCAGTTCGTGCCGTTCATCTGGGGCAGTGCGCAGCTGGCCGTAAACAGTCCGATCGAACCGGCCCAGTTCGTGGAGGAGAAATGGATTACCAAGTACAAGAAGGAGCTGATGTTCGTCGGGTGCATCGATTACATACAGCAGGTGAAGACGGGCCACTTTGCCGAACACTCGAATCAGCTGTGGAGCATCAGTGCCGTACCGCAGTGGTCAAAGATCTGTACCGGGCTGATTAAGATGTACCAGAAGGAGGTGCTGTCGAAGTTTCCCGTCATTCAGCACGTTTACTTCGGGTCTATACTTACACTGAAAACGGTCAAGCCGGGCACAATGTTGCCTAGTCCGCGGCTGGGAATGCTTCCGCGACAGCAGCAGCAGCGTCCGGCCCCGCCTGCAGTACCACCGCCACCCGCGTTTCCCGGTGGTGATGGAATGTGATAAAACTGTGTATTACACGCTATTAGTTTGTGATTGTTCAAAGAATAAAATGTTGAAATTATAAAAAAA]
[+] EMBL BX617571 [ GGTTCGGTAATGTTGCGTTCAAAAGCTGGTTCC AGAAGATGCAGTCGGAAAGCATGCAGCTTGTTAGCGATGCACTGCCGGACACGCTGAAGGATGCGGCCAAGGAGCTGTGCGTGTACTTTGTCGATTGTTTCGGGAATCCGACGCGCATTGATTACGGCACGGGGCATGAGCTGGCGTTCGTTATGTTTCTGATGTGCTTGTTCAAGACCGGGGCTGTTGAGCGGAAAGATGAGGTTGCTGTCGGGTTGAAGTTGTTCCAGAAGTACATCATCCTGGCAAGAAAGCTGCAGGTAACGTACCGAATGGAACCGGCCGGCAGCCACGGTGTGTGGAGTTTGGACGACTTTCAGTTCGTGCCGTTTATCTGGGGCAGTGCGCAGCTGGCCGTAAACAGTCCGATCGAACCGGCCCAGTTCGTGGAGGAGAAATGGATTACCAAGTACAAGAAGGAGCTGATGTTCGTCGGGTGCATCGATTACATACAGCAGGTGAAGACGGGCCACTTTGCCGAACACTCGAATCAGCTGTGGAGCATCAGTGCCGTACCGCAGTGGTCAAAGATCTGTACCGGGCTGATTAAGATGTACCAGAAGGAGGTGCTGTCGAAGTTTCCCGTCATTCAGCACGTTT ]
[+] EMBL BM578658 [ ccgGTTGCGTTCAAAAGCTGGTTCC AGAAGATGCAGTCGGAAAGCATGCAGCTTGTTAGCGATGCACTGCCGGACACGCTGAAGGATGCGGCCAAGGAGCTGTGCGTGTACTTTGTCGATTGTTTCGGGAATCCGACGCGCATTGATTACGGCACGGGGCATGAGCTGGCGTTCGTTATGTTTCTGATGTGCTTGTTCAAGACCGGGGCTGTTGAGCGGAAAGATGAGGTTGCTGTCGGGTTGAAGTTGTTCCAGAAGTACATCATCCTGGCAAGAAAGCTGCAGGTAACGTACCGAATGGAACCGGCCGGCAGCCACGGTGTGTGGAGTTTGGACGACTTTCAGTTCGTGCCGTTTATCTGGGGCAGTGCGCAGCTGGCCGTAAACAGTCCGATCGAACCGGCCCAGTTCGTGGAGGAGAAATGGATTACCAAGTACAAGAAGGAGCTGATGTTCGTCGGGTGCATCGATTACATACAGCAGGTGAAGACGG ]
consensusID : consensus_9015#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1116 fasta sequence
[CAGATTGCCCCAGGCTTAATCGAAACGCGTAGTTTTGCACGAAAGTTACAATAAAAGCAGCTAAAAATGGCGGAAAGCGGTGCGGATGTGAGAGCCGAAGCGGGAGTTTGTGGTGCCGGAAAAGCTGATCAAATCACCGATGGATATAGNGAGCTGTGTGCAAATGTCTGTGAATGCTATTACGATCTTGATCGTGCTATCATCAGCCAGCATGTCGGTAGCTGTATGCCAGGGTACTGCGCAACCAGTCCAGGGCAGTGTATGCGATATCCCACCCTGTCGTTGGCAAGAAGCTANAATTGCAAAGCGCTGGGACCCTGGTTGGAGCCAGCTTGGGANATCCTGAAACACTGGCCCCCCCGGAATTCTGAATCCCAAGGCTGGGANCCCGGGTATCAGNGGTCAAATAGGTAAGCCGTATCACCAACNACAGNCCTTGGGTTATACCCAGAACAGAATNGCCAACGATCCTNGGNGAAAGCACATTTGCACGCTTTGGTTAAAGCAGAATGGCCNACTGCGCCGGANAAAACGCCTTAGAAAAAGGTCGGACTATGACGCGGAGGCCCCAAAGAGGGAAAAGCACTTCGNTNACGCCCNTTTAGTTCANCCTACTCTTCGCTTACANCGANATACGGGNATCANCCGGNAGGGGAAATACCCCCGGAANCGCCGACCATCTATCGANATAAAAACACGNGNGGACAACACAAGCAGGAGGCCCATTTNGCAAGCNTATTGGANCGNTTACCACGGCANACACTAAGNNTAAACCTATGGAAGTCGTAAGGNACNNCTTGGAGATACCAGAAGAAAACCCGNGGTGGGTNANACACTAGGCATNATGAAAAAGCCCCGGGACAANAAGCAACATTCAACGAGAGTAAGNGCGCATTGGATCGAGGNGCNATTCATGTACAGCGATNTGGGATACCACAACGGAAAAAAGCTAACAAAATATCAAAANCCCAATGTGATCACAATGANACAAAAGACCACGTGGCACAGGCATGTATACACAGTAAANCACAGAANAAAANTGGAAAACACGTGGGTCCCGGAAGCAAGCCAACCAGGGAAGATTAGATGCACAGCGAAATAAGGGGAAATCGATAA]
[+] EMBL AL693707 [CAGATTGCCCCAGGCTTAATCGAAACGCGTAGTTTTGCACGAAAGTTACAATAAAAGCAGCTAAAAATGGCGGAAAGCGGTGCGGATGTGAGAGCCGAAGCGGGAGTTTGTGGTGCCGGAAAAGCTGATCAAATCACCGATGGATATAGNGAGCTGTGTGCAAATGTCTGTGAATGCTATTACGATCTTGATCGTGCTATCATCAGCCAGCATGTCGGTAGCTGTATGCCAGGGTACTGCGCAACCAGTCCAGGGCAGTGTATGCGATATCCCACCCTGTCGTTGGCAAGAAGCTANAATTGCAAAGCGCTGGGACCCTGGTTGGAGCCAGCTTGGGANATCCTGAAACACTGGCCCCCCCGGAATTCTGAATCCCAAGGCTGGGANCCCGGGTATCAGNGGTCAAATAGGTAAGCCGTATCACCAACNACAGNCCTTGGGTTATACCCAGAACAGAATNGCCAACGATCCTNGGNGAAAGCACATTTGCACGCTTTGGTTAAAGCAGAATGGCCNACTGCGCCGGANAAAACGCCTTAGAAAAAGGTCGGACTATGACGCGGAGGCCCCAAAGAGGGAAAAGCACTTCGNTNACGCCCNTTTAGTTCANCCTACTCTTCGCTTACANCGANATACGGGNATCANCCGGNAGGGGAAATACCCCCGGAANCGCCGACCATCTATCGANATAAAAACACGNGNGGACAACACAAGCAGGAGGCCCATTTNGCAAGCNTATTGGANCGNTTACCACGGCANACACTAAGNNTAAACCTATGGAAGTCGTAAGGNACNNCTTGGAGATACCAGAAGAAAACCCGNGGTGGGTNANACACTAGGCATNATGAAAAAGCCCCGGGACAANAAGCAACATTCAACGAGAGTAAGNGCGCATTGGATCGAGGNGCNATTCATGTACAGCGATNTGGGATACCACAACGGAAAAAAGCTAACAAAATATCAAAANCCCAATGTGATCACAATGANACAAAAGACCACGTGGCACAGGCATGTATACACAGTAAANCACAGAANAAAANTGGAAAACACGTGGGTCCCGGAAGCAAGCCAACCAGGGAAGATTAGATGCACAGCGAAATAAGGGGAAATCGATAA]
consensusID : consensus_9015#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 968 fasta sequence
[ATTGCCCGAGGTTNGCTCGCACGAAAAGCAAAACAAAAACATAAATCTTCCACTCCGAGCGCCATCGAAACGCGTAGTTTTGCAGAAAGTTTACAATAAAAGCAGCTAAAAATGGCAGAAAGCTGTGCGGATGGAGAGCCGAAGCGGGAGTTTGTGGTGCCGGAAAAGCTGATCAAATCACCGATGGATATGGAGCTGTG-GCAAATGTCGGAATGTTATTACGATCTGATCGGCTTCATCAGCAGCATGTCGGTAGCGGTGCAGGGTACGC-GCAATAGTCAGGAGG-TTGCGATTCCACCCGTCGTGGAGAAGCTAATGCAAGCGCTGGACC-GGCTGGAGCAGCTGGCAATCGAAACGCCACCGATCGATCAGCCGGCCCGGTTCGGTAATG-TTGCGTTCAAAAGCTGGTTCCAAAAGATGCAGTCGGAAAGCATGCAGCTTGTTAGCGACGCACTGCCGGACACGCTGAAGGATGCGGCGAAGGAGCTGTGCGTGTACTTTGTCGATTGTTTCGGGAATCCGACGCGCATTGATTACGGCACGGGGCATGAGCTGGCGTTCGTCATGTTTCTGATGTGTTTGTTCAAGACCGGGGCTGTAGAGCGGAA-GG-ATGAGG-TTGCTGTCGGG-TTGAAGCTGTTCCAGAAGTACATCATCCTGGCAAGAA-AGCTGCAGGTAACGTACCGAATGG-AACCGGCCGGCAGCCACGGTGTGTGGAGTTTGGACGACTTTCAGTTCGTGCCGTTCATCTGGGGCAGTGCGCACTGGCCCGTAAACAGTCCGATCGAACCGGCCCAGTTCGTGGAGGAGAAATGGATTACCAAGTACAAGAAGGAGCTGATGTTCGTCGGGTGCATCGATTACATACAGCAGGTGAAGACGGGCCACTTTGCCGAACACTCGAATCAGCTGTGGAGCATCAGTGCCGTACCGCAGTGGTCAAAGATCTGTACCGGGCTGATTAAGATGTA]
[+] EMBL AL931638 [ATTGCCCGAGGTTNGCTCGCACGAAAAGCAAAACAAAAACATAAATCTTCCACTCCGAGCGCCATCGAAACGCGTAGTTTTGCAGAAAGTTTACAATAAAAGCAGCTAAAAATGGCAGAAAGCTGTGCGGATGGAGAGCCGAAGCGGGAGTTTGTGGTGCCGGAAAAGCTGATCAAATCACCGATGGATATGGAGCTGTGNGCAAATGTCGGAATGTTATTACGATCTGATCGGCTTCATCAGCAGCATGTCGGTAGCGGTGCAGGGTACGCTGCAATAGTCAGGAGGTTTGCGATTCCACCCGTCGTGGAGAAGCTAATGCAAGCGCTGGACCTGGCTGGAGCAGCTGGCAATCGAAACGCCACCGATCGATCAGCCGGCCCGGTTCGGTAATGTTTGCGTTCAAAAGCTGGTTCCAAAAGATGCAGTCGGAAAGCATGCAGCTTGTTAGCGACGCACTGCCGGACACGCTGAAGGATGCGGCGAAGGAGCTGTGCGTGTACTTTGTCGATTGTTTCGGGAATCCGACGCGCATTGATTACGGCACGGGGCATGAGCTGGCGTTCGTCATG TTCTGATGTG TTGTTCAAGACCGGGGCTGTAGAGCGGAACGGCATGAGGCTTGCTGTCGGGCTTGANGCTGTTCCAGAAGTACATCATCCTGGCAAGAANAGCTGCAGGTAA ]
[+] EMBL CNS099CX [ tggaAAAAACGCCAATCTTCCACTCCGAGCGCCATCGAAACGCGTA TTTGCAGAAAGTTTACGATAAGAGCAGCTAAAAATGGCAGAAAGCGGTGCGGATGGAGAGCCGAAGCGGGAGTTTGTGGTGCCGGAAAAGCTGATCAAATCACCGATGGATATGGAGCTGTG GCAAATGTCGGAATGTTATTACGATCTGATCGGCTTCATTAGCAGCATGTCGGTAGCGTTGCAGGGTACGC GCAACAGTCAGGAGG TGGCGATTCCACCCGTCGTGGAGAAGCTAATGCAAGCGCTGGACC GGCTGGAGCAGCTGGCAATCGAAACGCCACCGATCGATCAGCCGGCCCGGTTCGGTAATG TTGCGTTCAAAAGTTGGTTCCAAAAGATGCAATCGGAAAGCATGCAGCTTGTTAGCGATGCACTGCCGGACACGCTGAAGGATGCGGCCAAGGAGCTGTGCGTGTACTTTGTCGATTGTTTCGGGAATCCGACGCGCATTGATTACGGCACGGGGCATGAGCTGGCGTTCGTCATGTTTCTGATGTGTTTGTTCAAGACCGGGGCTGTAGAGCGGAA GG ATGAGG TTGCTGTCGGG TTGAAGCTGTTCCAGAAGTACATCATCCTGGCAAGAA AGCTGCAGGTAACGTACCGAATGG AACCGGCCGGCAGCCACGGTGTGTGGAGTTTGGACGACTTTCAGTTCGTGCCGTTCATCTGGGGCAGTGCGCACTGGCCCGTAAACAGTCCGATCGAACCGGCCCAGTTCGTGGAGGAGAAATGGATTACCAAGTACAAGAAGGAGCTGATGTTCGTCGGGTGCATCGATTACATACAGCAGGTGAAGACGGGCCACTTTGCCGAACACTCGAATCAGCTGTGGAGCATCAGTGCCGTACCGCAGTGGTCAAAGATCTGTACCGGGCTGATTAAGATGTA]
[+] EMBL BM590393 [ ccgACTCCGAGCGCCATCGAAACGCGTAGTTTTGCAGAAAGTTTACAATAAAAGCAGCTAAAAATGGCAGAAAGCTGTGCGGATGGAGAGCCGAAGCGGGAGTTTGTGGTGCCGGAAAAGCTGATCAAATCACCGATGGATATGGAGCTGTG GCAAATGTCGGAATGTTATTACGATCTGATCGGCTTCATCAGCAGCATGTCGGTAGCGGTGCAGGGTACGC GCAATAGTCAGGAGG TTGCGATTCCACCCGTCGTGGAGAAGCTAATGCAAGCGCTGGACC GGCTGGAGCAGCTGGCAATCGAAACGCCACCGATCGATCAGCCGGCCCGGTTCGGTAATG TTGCGTTCAAAAGCTGGTTCCAAAAGATGCAGTCGGAAAGCATGCAGCTTGTTAGCGACGCACTGCCGGACACGCTGAAGGATGCGGCGAAGGAGCTGTGCGTGTACTTTGTCGATTGTTTCGGGAATCCGACGCGCATTGATTACGGCACGGGGCATGAGCTGGCGTTCGTCATGTTTCTGATGTGTTTGTTCAAGACCGGGGCTGTAGAGCGGAA GG ATGAGG TTGCTGTCGGG TTGAAGCTGTTCCAGAAGTACATCATCCTGGCAAGAA AGCTGCAGGTAACGTACCGAATGGAAACCGGCCGGCAGCCACGGTGTGTGGAGTTTGGACGACTTTCAGTTCGTGCCGT ]
consensusID : consensus_9015#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 165 fasta sequence
[GGCCAAGAATTCGCCCCCGAGGTGTCTNCATCGAAACGCGTAGTTTTGCAGAAAGTTTACAAGTAAAAGCAGCTAAAAAATGGCGGAATAGCGGTGCGGATGTGAGAGCCGAAGCGGGAGTTTGTGGTGCCNGGTAAAAGCTGAATCAAATCTACCGATGGGATA]
[+] EMBL AL930017 [GGCCAAGAATTCGCCCCCGAGGTGTCTNCATCGAAACGCGTAGTTTTGCAGAAAGTTTACAAGTAAAAGCAGCTAAAAAATGGCGGAATAGCGGTGCGGATGTGAGAGCCGAAGCGGGAGTTTGTGGTGCCNGGTAAAAGCTGAATCAAATCTACCGATGGGATA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9015#0 ------------------------------CCGCCCACGCGTCCGCCCACGCGTCCG-GC 29
consensus_9015#2 ATTGCCCGAGGTTNGCTCGCACGAAAAGCAAAACAAAAACATAAATCTTCCACTCCGAGC 60
consensus_9015#3 --------------------------------GGCCAAGAATTCGCCCCCGAGGTGT--C 26
consensus_9015#1 ---------------------------------------------CAGATTGCCCCAGGC 15
*
consensus_9015#0 GACATCGAAACGCGTAGTTTTGCAGAAAGTTTACAA-TAAAAGCAGCTAAAAA-TGGCGG 87
consensus_9015#2 GCCATCGAAACGCGTAGTTTTGCAGAAAGTTTACAA-TAAAAGCAGCTAAAAA-TGGCAG 118
consensus_9015#3 TNCATCGAAACGCGTAGTTTTGCAGAAAGTTTACAAGTAAAAGCAGCTAAAAAATGGCGG 86
consensus_9015#1 TTAATCGAAACGCGTAGTTTTGCACGAAAGTTACAA-TAAAAGCAGCTAAAAA-TGGCGG 73
********************* ** ****** **************** **** *
consensus_9015#0 AA-AGCGGTGCGGATG-GAGAGCCGAAGCGGGAGTTTGTGGTGCCGG--AAAAGCTGA-T 142
consensus_9015#2 AA-AGCTGTGCGGATG-GAGAGCCGAAGCGGGAGTTTGTGGTGCCGG--AAAAGCTGA-T 173
consensus_9015#3 AATAGCGGTGCGGATGTGAGAGCCGAAGCGGGAGTTTGTGGTGCCNGGTAAAAGCTGAAT 146
consensus_9015#1 AA-AGCGGTGCGGATGTGAGAGCCGAAGCGGGAGTTTGTGGTGCCGG--AAAAGCTGA-T 129
** *** ********* **************************** * ********* *
consensus_9015#0 CAAATC-ACCGATGGATAT--GGAGCTGTG-GCAAATGTCGG--AATGCTATTACGATCT 196
consensus_9015#2 CAAATC-ACCGATGGATAT--GGAGCTGTG-GCAAATGTCGG--AATGTTATTACGATCT 227
consensus_9015#3 CAAATCTACCGATGGG-AT--A-------------------------------------- 165
consensus_9015#1 CAAATC-ACCGATGGATATAGNGAGCTGTGTGCAAATGTCTGTGAATGCTATTACGATCT 188
****** ******** **
consensus_9015#0 -GATCG-GCT-TCATCAGC-AGCATGTCGGTAGCGTTG---CAGGGTAC-GCGCAAC-AG 247
consensus_9015#2 -GATCG-GCT-TCATCAGC-AGCATGTCGGTAGCGGTG---CAGGGTAC-GCGCAAT-AG 278
consensus_9015#3 ------------------------------------------------------------
consensus_9015#1 TGATCGTGCTATCATCAGCCAGCATGTCGGTAGCTGTATGCCAGGGTACTGCGCAACCAG 248
consensus_9015#0 TCAGGAG--GT---TGCGAT--TCCACCT-GTCGTGG---AGAAGCTAA---TGCAA-GC 292
consensus_9015#2 TCAGGAG--GT---TGCGAT--TCCACCC-GTCGTGG---AGAAGCTAA---TGCAA-GC 323
consensus_9015#3 ------------------------------------------------------------
consensus_9015#1 TCCAGGGCAGTGTATGCGATATCCCACCCTGTCGTTGGCAAGAAGCTANAATTGCAAAGC 308
consensus_9015#0 GCTGGACCGGTTGGAGCAGCTGGCAATCGAAACGCCCCCGATCGATCAGCCGGCCCGG-- 350
consensus_9015#2 GCTGGACCGGCTGGAGCAGCTGGCAATCGAAACGCCACCGATCGATCAGCCGGCCCGG-- 381
consensus_9015#3 ------------------------------------------------------------
consensus_9015#1 GCTGGGACCCTGGTTGGAGCCAGC--TTGGGANATC-CTGAAACACTGGCCCCCCCGGAA 365
consensus_9015#0 TTCGGTAATGTTGCGTTCAAAAGCTGGTTCCAAA-GATGCAGTCGGAAAGCATGCAGCTT 409
consensus_9015#2 TTCGGTAATGTTGCGTTCAAAAGCTGGTTCCAAAAGATGCAGTCGGAAAGCATGCAGCTT 441
consensus_9015#3 ------------------------------------------------------------
consensus_9015#1 TTCTGAATCCCAAGGCTGGGANCCCGGGTATCAGNGGTCAAATAGGTAAGC---CGTATC 422
consensus_9015#0 GTTAGCGATGCACTGCCGG--ACACGCTGAAGGATGCGGCCAAGGAGC-TGTGCGTGTAC 466
consensus_9015#2 GTTAGCGACGCACTGCCGG--ACACGCTGAAGGATGCGGCGAAGGAGC-TGTGCGTGTAC 498
consensus_9015#3 ------------------------------------------------------------
consensus_9015#1 ACCAACNACAGNCCTTGGGTTATACCCAGAACAGAATNGCCAACGATCCTNGGNGAAAGC 482
consensus_9015#0 TTTGTCGATTGTTTCGGGAATCCGACGCGCATTGATTACGGCACGGGGCATGAGCTGGCG 526
consensus_9015#2 TTTGTCGATTGTTTCGGGAATCCGACGCGCATTGATTACGGCACGGGGCATGAGCTGGCG 558
consensus_9015#3 ------------------------------------------------------------
consensus_9015#1 ACATTTGCACGCTTTGGTTAAAGCAGAATGGCCNACTGCGCCGGANAAAACGCCTTAGAA 542
consensus_9015#0 TTCGTTATGTTTCTGATGTGCTTGTTCAAGACCGGGGCTGTTGAGCGGAAAGATGAGGTT 586
consensus_9015#2 TTCGTCATGTTTCTGATGTGTTTGTTCAAGACCGGGGCTGTAGAGCGGAAGGATGAGGTT 618
consensus_9015#3 ------------------------------------------------------------
consensus_9015#1 AAAGGTCGGACTATGACGCGGAGGCCCCAAAGAGGGA----AAAGCACTTCGNTNACGC- 597
consensus_9015#0 GCTGTCGGGTTGAAGTTGTTCCAGAAGTACATCATCCT--GGCAAGAAAGCTGCAGGTAA 644
consensus_9015#2 GCTGTCGGGTTGAAGCTGTTCCAGAAGTACATCATCCT--GGCAAGAAAGCTGCAGGTAA 676
consensus_9015#3 ------------------------------------------------------------
consensus_9015#1 -CCNTTTAGTTCANCCTACTCTTCGCTTACANCGANATACGGGNATCANCCGGNAGGGGA 656
consensus_9015#0 CGTACCGAATGGAACCGGCCGGCAGCCA-CGGTGTGTGGAGTTTGGACGACTTTCAGTTC 703
consensus_9015#2 CGTACCGAATGGAACCGGCCGGCAGCCA-CGGTGTGTGGAGTTTGGACGACTTTCAGTTC 735
consensus_9015#3 ------------------------------------------------------------
consensus_9015#1 AATACCCC-CGGAANCGCCGACCATCTATCGANATAAAAACACGNGNGGACAACACAAGC 715
consensus_9015#0 GTGCCGTTCATCTGGGGCAGTGCGCAGCTGGCCGTAAACAGTCCGATCGAACCGGCCCAG 763
consensus_9015#2 GTGCCGTTCATCTGGGGCAGTGCGCACTGGCCCGTAAACAGTCCGATCGAACCGGCCCAG 795
consensus_9015#3 ------------------------------------------------------------
consensus_9015#1 AGGAGGCCCATTTNG--CAA-GCNTATTGGANCGNTTACCACGGCANACACTAAGNNTAA 772
consensus_9015#0 TTCGTGGAGGAGAAATGGATTACCAAGTACAAGAAGGAGCTGATGTTCGTCGGGTGCATC 823
consensus_9015#2 TTCGTGGAGGAGAAATGGATTACCAAGTACAAGAAGGAGCTGATGTTCGTCGGGTGCATC 855
consensus_9015#3 ------------------------------------------------------------
consensus_9015#1 ACC-TATGGAAGTCGTAAGGNACNNCTTGGAGATACCAGAAGAAAACCCGNGG-----TG 826
consensus_9015#0 GATTACATACAGCAGGTGAAGACGGGCCACTTTGCCGAACACTCGAATCAGCTGTGGAGC 883
consensus_9015#2 GATTACATACAGCAGGTGAAGACGGGCCACTTTGCCGAACACTCGAATCAGCTGTGGAGC 915
consensus_9015#3 ------------------------------------------------------------
consensus_9015#1 GGTNANACACTAGGCATNATGAAAAAGCCCCGGGACAANAA---GCAACATTCAACGAGA 883
consensus_9015#0 ATCAGTGCCGTACCGCAGTGGTCAAAGATCTGTACCGGGCTGATTAAGATGTACCAGAAG 943
consensus_9015#2 ATCAGTGCCGTACCGCAGTGGTCAAAGATCTGTACCGGGCTGATTAAGATGTA------- 968
consensus_9015#3 ------------------------------------------------------------
consensus_9015#1 GTAAGNGC-GCATTGGATCGAGGNGCNATTCATGTACAGCGATNTGGGATACCACAACGG 942
consensus_9015#0 GAGGTGCTGTCGAAGTTTCCCGTCATTCAGCACGTTTACTTCGGGTCTATACTTACACTG 1003
consensus_9015#2 ------------------------------------------------------------
consensus_9015#3 ------------------------------------------------------------
consensus_9015#1 AAAAAAGCTAACAAAATATCAAAANCCCAATGTGATCACAATGANACAAAAGAC-CACGT 1001
consensus_9015#0 AAAACGGTCAAGCCGGGCACAATGTTGCCTAGTCCGCGGCTGGGAATGCTTCCGCGACAG 1063
consensus_9015#2 ------------------------------------------------------------
consensus_9015#3 ------------------------------------------------------------
consensus_9015#1 GGCACAGGCATGT-ATACACAGTAAANCACAGAANAAAANTGGAAAACACGTGGGTCCCG 1060
consensus_9015#0 CAGCAGCAGCGTCCGGCCCCGCCTGCAGTACCACCGCCACCCGCGTTTCCCGGTGGTGAT 1123
consensus_9015#2 ------------------------------------------------------------
consensus_9015#3 ------------------------------------------------------------
consensus_9015#1 GAAGCAAGCCAACCAGGGAAGATTAGATGCACAGCGAAATAAGGGGAAATCGATAA---- 1116
consensus_9015#0 GGAATGTGATAAAACTGTGTATTACACGCTATTAGTTTGTGATTGTTCAAAGAATAAAAT 1183
consensus_9015#2 ------------------------------------------------------------
consensus_9015#3 ------------------------------------------------------------
consensus_9015#1 ------------------------------------------------------------
consensus_9015#0 GTTGAAATTATAAAAAAA 1201
consensus_9015#2 ------------------
consensus_9015#3 ------------------
consensus_9015#1 ------------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||