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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9112#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1469 fasta sequence
[ACTGGCTACAAAA-CTG-GACAACATTTCCATGCGCTCGGATGCCAGCAAGATGCTTAACATTCCTATTCCGGAGCTGAAAACAATCAACAATCTACCGCCCCTGGATACGCCACTCGCAATGCTGTCGGAGAAACTATCGTCATTTTCTTTTGATCAAGATAAGTAGCGATCATGTCCCTTTCATCCTGACAGGCAGTCGATTGAGTCGACCACAAGCTGTCGGTGACGGTCAGGCACTCGCGCGAGACCCTCACAAACGCGGGCTATATCCTTTTCTTGGAGATTGATCGACTGCTTTCCCTTTCGGTCACGGGTTAAAGCTTCATCCCAGCCCGGCAAGGATCATAATCCTGTTTGCCATTGGAAGGATTTCCGAGGAGATCGATTTTCCGAAAGGGATATATTTCACTGGAAGTTGAATTGTTCGTGGAAACGATAGTATAGCATCAACGAGGTAATTCCTACGATGCTGCATCAGCCCTATTACGCTTAAGTATCATAAAGTACCTTTCAGGCCCTGTGTGAAGGACTCGATATTATTTAAGTTTAAATTGATCGTAACGTTAAATTTATTCATCGCCTAGGGAGAAAAGAGACAGTGGGCCAATTAAGCGAACCTGATTCACATTACTCAGATCGGGAGCGGTGCAAGCACCAAAGAAAGCTCACCAAAACTCGTACAATTTCTAGTATTTGTGACTATTGGAGAAGAAACTGGAGGGATGTTACGAAGTCCGAGGGAGTGCGACATTGTACCACAACAAACCATTGTAATGCATGACCCTTGTACAATGGAACAATCTTGATTCCGGATCGCTTTTCTGGTCAAAAGCGAGCAACAGTGCCGGAG-AGCCAAGATTAGCCAAGTAAACCAAACACACAATGTCCCCTTATCGGTAACGGCAGGAGTGAGCAGCAGCAAATGAGCCGCGAAACAACA-GGAACGAATTTACATTCGTG-AAAAACACACAGCAAGAAAAGTGCGCAAGTCAAGCTCCCGTGTGCCCGATGCCGTCGAGGCTTTTAGCAATTATCATAGCTTTATGTGAAACAATTTTAACCGTCATAATTAATAATTTATTATTCGGCCACAAAGAGAAAGGTGTGATTGTTACCTGTTAGCGAGTGTTTCTGCATGTTATCGATTTTATCGACGAATTGTTTCTGTTATTAAAAGATTTTAATCGTTGAGCTGGGGTTGTGCAATAGCTCGCTAGATTGTAAGTAAAAGGTGAGGATAATTTTTAGTTAAAAAAAGGCTAGGCCATATCCAATGGCGGGTTCGTTTGCCAATTGTATTGATTGCATGCATAAACGTTAATTTCTAGATTTAATCGTTTGCTGCGCTAGTGCCATGTTTATGAACAATCAGTTGT-CCTTACAAAACACGTCATGTTTGCTTGTGCGAGGCCTTCAAACCTAAGCTAGTATTAAGTTCCACCGTTGTTAATGTACTTAATAAATTTTCT]
[+] EMBL CNS09EE9 [ACTGGCTACAAAACCTG GACAACATTTCCATGCGCTCGGATGCCAGCAAGATGCTTAACATTCCTATTCCGGAGCTGAAAACAATCAACAATCTACCGCCCCTGGATACGCCACTCGCAATGCTGTCGGAGAAACTATCGTCATTTTCTTTTGATCAAGATAAGTAGCGATCATGTCCCTTTCATCCTGACAGGCAGTCGATTGAGTCGACCACAAGCTGTCGGTGACGGTCAGGCACTCGCGCGAGACCCTCACAAACGCGGGCTATATCCTTTTCTTGGAGATTGATCGACTGCTTTCCCTTTCGGTCACGGGTTAAAGCTTCATCCCAGCCCGGCAAGGATCATAATCCTGTTTGCCATTGGAAGGATTTCCGAGGAGATCGATTTTCCGAAAGGGATATATTTCACTGGAAGTTGAATTGTTCGTGGAAACGATAGTATAGCATCAACGAGGTAATTCCTACGATGCTGCATCAGCCCTATTACGCTTAAGTATCATAAAGTACCTTTCAGGCCCTGTGTGAAGGACTCGATATTATTTAAGTTTAAATTGATCGTAACGTTAAATTTATTCATCGCCTAGGGAGAAAAGAGACAGTGGGCCAATTAAGCGAACCTGATTCACATTACTCAGATCGGGAGCAGTGCAAGCACCAAAGAAAGCTCACCAAAACTCGTACAATTTCTAGTATTTGTGACTATTGGAGAAGAAACTGGAGGGATGTTACGAAGTCCGAGGGAGTGCGACATTGTACCACAACAAACCATTGTTATGCATGACCCTTGTACAATGGAACAATCTTGATTCCGGATCGCTTTTCTGGTCAAAAGCGAGCAACAGTGCCGGAG AGCCAAGATTAGCCAAGTAAACCAAACACACAATGTCCCCTTATCGGTAACGGCAGGAGTGAGCAGCAGCAAATGAGCCGCGAAACAACA GGCACGAATTTACATTCGTG AAAAACACACAGCA ]
[+] EMBL CNS09EDS [ GGCTACAAAA CTGAGACAACATTTCCATGCGCTCGGATGCCAGCAAGATGCTTAACATTCCTATTCCGGAGCTGAAAACAATCAACAATCTACCGCCCCTGGATACGCCACTCGCAATGCTGTCGGAGAAACTATCGTCATTTTCTTTTGATCAAGATAAGTAGCGATCATGTCCCTTTCATCCTGACAGGCAGTCGATTGAGTCGACCACAAGCTGTCGGTGACGGTCAGGCACTCGCGCGAGACCCTCACAAACGCGGGCTATATCCTTTTCTTGGAGATTGATCGACTGCTTTCCCTTTCGGTCACGGGTTAAAGCTTCATCCCAGCCCGGCAAGGATCATAATCCTGTTTGCCATTGGAAGGATTTCCGAGGAGATCGATTTTCCGAAAGGGATATATTTCACTGGAAGTTGAATTGTTCGTGGAAACGATAGTATAGCATCAACGAGGTAATTCCTACGATGCTGCATCAGCCCTATTACGCTTAAGTATCATAAAGTACCTTTCAGGCCCTGTGTGAAGGACTCGATATTATTTAAGTTTAAATTGATCGTAACGTTAAATTTATTCATCGCCTAGGGAGAAAAGAGACAGTGGGCCAATTAAGCGAACCTGATTCACATTACTCAGATCGGGAGCGGTGCAAGCACCAAAGAAAGCTCACCAAAACTCGTACAATTTCTAGTATTTGTGACTATTGGAGAAGAAACTGGAGGGATGTTACGAAGTCCGAGGGAGTGCGACATTGTACCACAACAAACCATTGTAATGCATGACCCTTGTACAATGGAACAATCTTGATTCCGGATCGCTTTTCTGGTCAAAAGCGAGCAACAGTGCCGGAG AGCCAAGATTAGCCAAGTAAACCAAACACAC ]
[-] EMBL CNS09EEA [ TAAGTAGCGATCATGTCCCTTTCATCCTGACAGGCAGTCGATTGAGTCGACCACAAGCTGTCGGTGACGGTAAGGGACTCGCGCGAGACCCTCACAAACGCGGGCTATATCCTTTTCTTGGAGATTGATCAACTGCTTTCCCTTTCGGTCACGGGTTAAAGCTTCATCCCAGCCCGGCAAGGATCATAATCCTGTTTGCCATTGGAAGGATTTCCGAGGAGATCGATTTTCCGAAAGGGATATATTTCACTGGAAGTTGAATTGTTCGTGGAAACGATAGTATAGCATCAACGAGGTAATTCCTACGATGCTGCATCAGCCCTATTACGCTTAAGTATCATAAAGTACCTTTCAGGCCCTGTGTGAAGGACTCGATATTATTTAAGTTTAAATTGATCGTAACGTTAAATTTATTCATCGCCTAGGGAGAAAAGAGACAGTGGGCCAATTAAGCGAACCTGATTCACATTACTCAGATCGGGAGCGGTGCAAGCACCAAAGAAAGCTCACCAAAACTCGTACAATTTCTAGTATTTGTGACTATTGGAGAAGAAACTGGAGGGATGTTACGAAGTCCGAGGGAGTGCGACATTGTACCACAACAAACCATTGTAATGCATGACCCTTGTACAATGGAACAATCTTGATTCCGGATCGCTTTTCTGGTCAAAAGCGAGCAACAGTGCCGGAG AGCCAAGATTAGCCAAGTAAACCAAACACACAATGTCCCCTTATCGGTAACGGCAGGAGTGAGCAGCAGCAAATGAGCCGCGAAACAACA GGAACGAATTTACATTCGTG AAAAACACACAGCAAGAAAAGTGCGCAAGTCAA ]
[-] EMBL CNS09EDT [ aaATCCTAACAGGCAGTCGATTGAGTCGACCACAAGCTGTCGGTGACGGTAAGGAACTCGCGCGAGACCCTCACAAACGCGGGCTATATCCTTTTCTTGGAGATTGATCAACTGCTTTCCCTTTCGGTCACGGGTTAAAGCTTCATCCCAGCCCGGCAAGGATCATAATCCTGTTTGCCATTGGAAGGATTTCCGAGGAGATCGATTTTCCGAAAGGGATATATTTCACTGGAAGTTGAATTGTTCGTGGAAACGATAGTATAGCATCAACGAGGTAATTCCTACGATGCTGCATCAGCCCTATTACGCTTAAGTATCATAAAGTACCTTTCAGGCCCTGTGTGAAGGACTCGATATTATTTAAGTTTAAATTGATCGTAACGTTAAATTTATTCATCGCCTAGGGAGAAAAGAGACAGTGGGCCAATTAAGCGAACCTGATTCACATTACTCAGATCGGGAGCGGTGCAAGCACCAAAGAAAGCTCACCAAAACTCGTACAATTTCTAGTATTTGTGACTATTGGAGAAGAAACTGGAGGGATGTTACGAAGTCCGAGGGAGTGCGACATTGTACCACAACAAACCATTGTAATGCATGACCCTTGTACAATGGAACAATCTTGATTCCGGATCGCTTTTCTGGTCAAAAGCGAGCAACAGTGCCGGAG AGCCAAGATTAGCCAAGTAAACCAAACACACAATGTCCCCTTATCGGTAACGGCAGGAGTGAGCAGCAGCAAATGAGCCGCGAAACAACA GGAACGAATTTACATTCGTG AAAAACACACAGCAAGAAAAGTGCGCAAGTCAA ]
[+] EMBL CNS09IJY [ TCGTGG AACGATAGTATAGCATCAACGAGGTAATTCCTACGATGCTGCATCAGCCCTATTACGCTTAAGTATCATAAAGTACCTTTCAGGCCCTGTGTGAAGGACTCGATATTATTTAAGTTTAAATTGATCGTAACGTTAAATTTATTCATCGCCTAGGGAGAAAAGAGACAGTGGGCCAATTAAGCGAACCTGATT CATTACTCAGATCGGGAACGGTGCAAGCACCAAAGAAAGCTCACCAAAACTCGTACAATTTCTAGTATTTGTGACTATTGGAGAAGAAACTGGAGGGATGTTACGAAGTCCGA AGAGTGCGACATTGTACCACAACAAACCATTGTAATGCATAACCCTTGTACAATAGAACAATCTTGATTCCGGATCGCTTTTCTGGTCAAAAGCGAGCAACAGTGCCGGAG AGCCAAGATTAGCCAAGTAAACCAAACACACAATGTCCCCTTATCGGTAACGGCAGGAGTGAGCAGCAGCAAATGAGCCGCGAAACAACA GGAACGAATTTACATTCGTG AAAAACACACAGCAAGAAAAGTGCGCAAGTGAAGCTCCCGTGTGCCCGATGCCGTCGAGGCTTTTAGCAATTATCATAGCTTTATGTGAAACAATTTTAACCGTCATAATTAATAATTTATTATTCGGCCACAAAGAGAAAGGTGTGATTGTTACCTGTTAGCGAGTGTTTCTGCATGTTATCGATTTTATCGACGAATTGTTTCTGTTATTAAAAGATTTTAATCGTTGAGCTGGGGTTGTGCAATAGCTCGCTAGATTGTAAGTAAAAGGTGAGGATAATTTTTAGTTAAAAAAAGGCTAGGCCATATCCAATGGCGGGTTCGTTTGCCAATTGTATTGATTGCATGCATAAACGTTAATTTCTAGATTTAATCGTTTGCTGCGCTAGTGCCATGTTTATGAACAATCAGTTGT CCTTACAAAACACGTCATGTTTGCTTGTGCGAGGCCTTCAAACCTAAGCTAGTATTAAGTTCCACCGTTGTTAATGTACTTAATA ]
[-] EMBL CNS093BW [ CTGCATCAGCCCTATTACGCTTAAGTATCATAAAGTA CTTTCAGGCCCTGTGTGAAGGACTCGATATTATTTAAGTTTAAATTGATCGTAACGTTAAATTTATTCATCGCCTAGGGAGAAAAGAGACAGTGGGCCAATTAAGCGAACCTTATTCACATTACTCAGATCGGGAGCGGTGCAGGCACCAAAGAAAGCTCACCAAAACTCGTACAATTTCTAGTATTTGTGACTATTGGAGAAGAAACTGGAGGGATGTTACGAAGTCCGAGGGAGTGCGACATTGTACCACAACAAACCATTGTAATGCATAACCCTTGTACAATGGAACAATCTTGATTCCGGATCGCTTTTCTGGTCAAAAGCGAGCAACAGTGCCGGAG AGCCAAGATTAGCCAAGTAAACCAAACACACAATGTCCCCTTATCGGTAACGGCAGGAGTGAGCAGCAGCAAATGAGCCGCGAAACAACA GGAACGAATTTACATTCGTG AAAAACACACAGCAAGAAAAGTGCGCAAGTCAA ]
[-] EMBL CNS09IJZ [ TATCATAAAGTA CTTTCAGGCCCTGTGTGAAGGACTCGATATTATTTAAGTTTAAATTGATCGTAACGTTAAATTTATTCATCGCCTAGGGAGAAAAGAGACAGTGGGCCAATTAAGCGAACCTGATT CATTACTCAGATCGGGAAC GTGCAAGCACCAAAGAAAGCTCACCAAAACTCGTACAATTTCTAGTATTTGTGACTATTGGAGAAGAAACTGGAGGGATGTTACGAAGTCCGAAGGAGTGCGACATTGTACCACAACAAACCATTGTAATGCATAACCCTTGTACAATAGAACAATCTTGATTCCGGATCGCTTTTCTGGTCAAAAGCGAGCAACAGTGCCGGAG AGCCAAGATTAGCCAAGTAAACCAAACACACAATGTCCCCTTATCGGTAACGGCAGGAGTGAGCAGCAGCAAATGAGCCGCGAAACAACA GGAACGAATTTACATTCGTG AAAAACACACAGCAAGAAAAGTGCGCAAGTGAAGCTCCCGTGTGCCCGATGCCGTCGAGGCTTTTAGCAATTATCATAGCTTTATGTGAAACAATTTTAACCGTCATAATTAATAATTTATTATTCGGCCACAAAGAGAAAGGTGTGATTGTTACCTGTTAGCGAGTGTTTCTGCATGTTATCGATTTTATCGACGAATTGTTTCTGTTATTAAAAGATTTTAATCGTTGAGCTGGGGTTGTGCAATAGCTCGCTAGATTGTAAGTAAAAGGTGAGGATAATTTTTAGTTAAAAAAAGGCTAGGCCATATCCAATGGCGGGTTCGTTTGCCAATTGTATTGATTGCATGCATAAACGTTAATTTCTAGATTTAATCGTTT CTGCGCTAGTGCCATGTTTATGAACAATCAGTTGT CCTTACAAAACACGTCATGTTTGCTTGTGCGAGGCCTTCAAACCTAAGCTAGTATTAAG TCCACCGTTGTTAATGTACTT ]
[+] EMBL CNS0969V [ AGTGGG CAATTAAGCGAACCTGATT CATTACTCAGATCGGGAACGGTGCAAGCACCAAAGAAAGCTCACCAAAACTCGTACAATTTCTAGTATTTGTGACTATTGGAGAAGAAACTGGAGGGATGTTACGAAGTCCGA AGAGTGCGACATTGTACCACAACAAACCATTGTAATGCACAACCCTTGTACAATAGAACAATCTTGATTCCGGATCGCTTTTCTGGTCAAAAGCGAGCAACAGTGCCGGAG AGCCAAGATTAGCCAAGTAAACCAAACACACAATGTCCCCTTATCGGTAACGGCAGGAGTGAGCAGCAGCAAATGAGCCGCGAAACAACAGGGAACGAATTTACATTCGTGAAAAAACACACAGCAAGAAAAGT ]
[+] EMBL BX620156 [ TCTGGTCAAAAGCGAGCAACAGTGCCGGGGCAGCCAAGATTAGCCAAGTAAATCAAACAAACAATGTCCCCTTATCGGTAACGGCAGGAGTGAGCAGCAGCAAATGAGCCGCGAAACAACA GGAACGAATTTACATTCGTG AAAAACACACAGCAAGAAAAGTGCGCAAGTGAAGCTCCCGTGTGCCCGATGCCGTCGAGGCTTTTAGCAATTATCATAGCTTTATGTGAAACAATTTTAACCGTCATAATTAATAATTTATTATTCGGCCATAAAGAGAAAGGTGTGATTGTTACCTGTTAGCGAGTGTTTCTGCATGTTATCGATTTTATCGACGCATTGTTTCTGTTATTAAAAGATTTTAATCGTTGAGCTGGGGTTGTGCAATAGCTCGCTAGTTTGTAAGCAAAAGGTGAGGATAATTTTTAGTTAAAAAAAGGCTAGGCCATATCCAATGGCAGGTTCGTTCGCCAATTGTATTGATTGCATGCATAAACGTTATTTTGTAGATTTAATGGATTGCTGCGCGAGTGCCATGTTTATGAACAATCAGTTGTCCCTTACAAAACACGNCATGTTTGCTTGTGCGAGGCCTTCAAACCTAAGCTAGTTATAAGTTCCACCGTTGTTAATGNACTTAATAAATTTTCT]
[-] EMBL CNS0969W [ TGAGCTGGGGTTGTGCAATAGCTCGCTAGATTGTAAGTAAAAGGTGAGGATAATTTTTAGTTAAAAAAAGGCTAGGCCATATCCAATGGCGGGTTCGTTTGCCAATTGTATTGATTGCATGCATAAACGTTAATTTCTAGATTTAATCGTTTG TGCGCTAGTGCCATGTTTATGAACAATCAGTTGT CCTT ]
consensusID : consensus_9112#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 830 fasta sequence
[GCAGATCCCGCACGAGNGNGAGACAGTGGGCAATTAAGCGACACCTGATTCACATTACTCAGATCGGGAGCGGTGCAAGCACCAAAGAAAGCTCACCAAAACTCGTACAATTTCTAGTATTTGTGACTATTGGAGAAGAAACTGGAGGGATGTTACGAAGTCCGAAGGAGTGCGACATTGTACCATAACAAACCATTGTAATGCATAACCCTTGTACAATGGAACAATCTTGATTCCGGATCGCTTTTCTGGTCAAAAGCGAGCAACAGTGCCGGAGAGCCAAGATTAGCCAAGTAAATCAAACAAACAATGTCCCCTTATCGGTAACGGCAGGAGTGAGCAGCAGCAAATGAGCCGCGAAACAACAGGAACGAATTTACATTCGTGAAAAACACACAGCAAGAAAAGTGCGCAAGTGAAGCTCCCGTGTGCCCGATGCCGTCGAGGCTTTTAGCAATTATCATAGCTTTATGTGAAACAATTTTAACCGTCATAATTAATAATTTATTATTCGGCCATAAAGAGAAAGGTGTGATTGTTACCTGTTAGCGAGTGTTTCTGCATGTTATCGATTTTATCGACGCATTGTTTCTGTTATTAAAAGATTTTAATCGTTGAGCTGGGGGTTGTGGCAAATAGCTCGGCTAGTTTGTAAAGGCAAAAAGGTGAGGATAATTTTTTCAGGTTTAACAAAAAAGGCTAGGGCCATATCCCAATGGCAGGGTTCGGTTCGCCAAATTGGTATTTGATTGCTGCATAACCGTTATTTTGNACAATTCATGGGATTGCTTGCCGCAGTTCCCTCGTTTTGACCCACTCGTNTCCTTCAC]
[+] EMBL BX466171 [GCAGATCCCGCACGAGNGNGAGACAGTGGGCAATTAAGCGACACCTGATTCACATTACTCAGATCGGGAGCGGTGCAAGCACCAAAGAAAGCTCACCAAAACTCGTACAATTTCTAGTATTTGTGACTATTGGAGAAGAAACTGGAGGGATGTTACGAAGTCCGAAGGAGTGCGACATTGTACCATAACAAACCATTGTAATGCATAACCCTTGTACAATGGAACAATCTTGATTCCGGATCGCTTTTCTGGTCAAAAGCGAGCAACAGTGCCGGAGAGCCAAGATTAGCCAAGTAAATCAAACAAACAATGTCCCCTTATCGGTAACGGCAGGAGTGAGCAGCAGCAAATGAGCCGCGAAACAACAGGAACGAATTTACATTCGTGAAAAACACACAGCAAGAAAAGTGCGCAAGTGAAGCTCCCGTGTGCCCGATGCCGTCGAGGCTTTTAGCAATTATCATAGCTTTATGTGAAACAATTTTAACCGTCATAATTAATAATTTATTATTCGGCCATAAAGAGAAAGGTGTGATTGTTACCTGTTAGCGAGTGTTTCTGCATGTTATCGATTTTATCGACGCATTGTTTCTGTTATTAAAAGATTTTAATCGTTGAGCTGGGGGTTGTGGCAAATAGCTCGGCTAGTTTGTAAAGGCAAAAAGGTGAGGATAATTTTTTCAGGTTTAACAAAAAAGGCTAGGGCCATATCCCAATGGCAGGGTTCGGTTCGCCAAATTGGTATTTGATTGCTGCATAACCGTTATTTTGNACAATTCATGGGATTGCTTGCCGCAGTTCCCTCGTTTTGACCCACTCGTNTCCTTCAC]
consensusID : consensus_9112#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 759 fasta sequence
[GATGGCTCAGCAGAATCGCCCCGACGGTATTCACATTACTCAGATCGGGAGCGGTGCAAGCACCAAAGAAAGCTCACCAAAACTCGTACAATTTCTAGTATTTGTGACTATTGGAGAAGAAACTGGAGGGATGTTACGAAGTCCGAAGGAGTGCGACATTGTACCATAACAAACCATTGTAATGCATAACCCTTGTACAATGGAACAATCTTGATTCCGGATCGCTTTTCTGGTCANACAAGCGAGGCAACAGTGCCGGAGAGCCAAGATTAGCAAGTANACATCAAACAAACAATGTCCCTTATCGGTAACGGCAGGAGTGAGCAGCACGCCACAATGAGCCGCGAAAACAAACCAGGAACGAATTTAACATTCGTTGANAAAACCAACACAGCAAGAAAAGTGCGCAAGTGAAGCTCCCGTGTGCCCGATGCCGATACAGAGGCTTTTAGCAATTTGATACATAGGCTCTTATGTGACCACCCACATCTTCTAANCCCGTTCCATACAATTCAAATNAAATTTNTAATTCTACTTCCCNGCGGCGCCATTGACACACAGGCACGGAACAACAAGGGGCTGTTNCGACATCTCGGGTGCAACCCCCCTGGAGTTCTCANACACCGGAACNGATGGATCACTACACTTGGCCAACTTGGTTTTCAGATCCNGAATTCTCNATACTAAATTCCGAAGCCAGACCCNACTNTTAGTATATCCCTGGCTTCACATTCTCAAAAGCACACGGAAGTTNTGNTG]
[+] EMBL AL696779 [GATGGCTCAGCAGAATCGCCCCGACGGTATTCACATTACTCAGATCGGGAGCGGTGCAAGCACCAAAGAAAGCTCACCAAAACTCGTACAATTTCTAGTATTTGTGACTATTGGAGAAGAAACTGGAGGGATGTTACGAAGTCCGAAGGAGTGCGACATTGTACCATAACAAACCATTGTAATGCATAACCCTTGTACAATGGAACAATCTTGATTCCGGATCGCTTTTCTGGTCANACAAGCGAGGCAACAGTGCCGGAGAGCCAAGATTAGCAAGTANACATCAAACAAACAATGTCCCTTATCGGTAACGGCAGGAGTGAGCAGCACGCCACAATGAGCCGCGAAAACAAACCAGGAACGAATTTAACATTCGTTGANAAAACCAACACAGCAAGAAAAGTGCGCAAGTGAAGCTCCCGTGTGCCCGATGCCGATACAGAGGCTTTTAGCAATTTGATACATAGGCTCTTATGTGACCACCCACATCTTCTAANCCCGTTCCATACAATTCAAATNAAATTTNTAATTCTACTTCCCNGCGGCGCCATTGACACACAGGCACGGAACAACAAGGGGCTGTTNCGACATCTCGGGTGCAACCCCCCTGGAGTTCTCANACACCGGAACNGATGGATCACTACACTTGGCCAACTTGGTTTTCAGATCCNGAATTCTCNATACTAAATTCCGAAGCCAGACCCNACTNTTAGTATATCCCTGGCTTCACATTCTCAAAAGCACACGGAAGTTNTGNTG]
consensusID : consensus_9112#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 752 fasta sequence
[GATCGCCGAGGTTAACTGGAGGGATGTTACGAAGTCCGAAGGAGTGCGACATTGTACCATAACAAACCATTGTAATGCATAACCCTTGTACAATGGAACAATCTTGATTCCGGATCGCTTTTCTGGTCAAAAGCGAGCAACAGTGCCGGAGAGCCAAGATTAGCCAAGTAAATCAAACAAACAATGTCCCCTTATCGGTAACGGCAGGAGTGAGCAGCAGCAAATGAGCCGCGAAACAACAGGAACGAATTTACATTCGTGAAAAACACACAGCAAGAAAAGTGCGCAAGTGAAGCTCCCGTGTGCCCGATGCCGTCGAGGCTTTTAGCAATTATCATAGCTTTATGTGAAACAATTTTAACCGTCATAATTAATAATTTATTATTCGGCCATAAAGAGAAAGGTGTGATTGTTACCTGTTAGCGAGTGTTTCTGCATGTTATCGATTTTATCGACGCATTGTTTCTGTCTATTAAACAGCATTTTAATCGTTGAGCTGGGGTTGTGCAATAGCTCGCTAGTTTGTAAGCAAAAAGGTGAGGATAATTTTTAGTTCAAACANAAAGGCTAGGCCATATCCAATGGCAAGGTTCGTATCGCCAAATTGTACTTGATTGCCATTGCAATAAACCGTTATTTTGTAGCATTTANATGGAGTTGCTGCGCGAGTGCCATGTTTATGAACACTCANGTTGTCCTTACAAAAACACGGTCATGTACGCTTGCTGCGAGGCTTCAAACCTAAGCTAGTN]
[+] EMBL AL694773 [GATCGCCGAGGTTAACTGGAGGGATGTTACGAAGTCCGAAGGAGTGCGACATTGTACCATAACAAACCATTGTAATGCATAACCCTTGTACAATGGAACAATCTTGATTCCGGATCGCTTTTCTGGTCAAAAGCGAGCAACAGTGCCGGAGAGCCAAGATTAGCCAAGTAAATCAAACAAACAATGTCCCCTTATCGGTAACGGCAGGAGTGAGCAGCAGCAAATGAGCCGCGAAACAACAGGAACGAATTTACATTCGTGAAAAACACACAGCAAGAAAAGTGCGCAAGTGAAGCTCCCGTGTGCCCGATGCCGTCGAGGCTTTTAGCAATTATCATAGCTTTATGTGAAACAATTTTAACCGTCATAATTAATAATTTATTATTCGGCCATAAAGAGAAAGGTGTGATTGTTACCTGTTAGCGAGTGTTTCTGCATGTTATCGATTTTATCGACGCATTGTTTCTGTCTATTAAACAGCATTTTAATCGTTGAGCTGGGGTTGTGCAATAGCTCGCTAGTTTGTAAGCAAAAAGGTGAGGATAATTTTTAGTTCAAACANAAAGGCTAGGCCATATCCAATGGCAAGGTTCGTATCGCCAAATTGTACTTGATTGCCATTGCAATAAACCGTTATTTTGTAGCATTTANATGGAGTTGCTGCGCGAGTGCCATGTTTATGAACACTCANGTTGTCCTTACAAAAACACGGTCATGTACGCTTGCTGCGAGGCTTCAAACCTAAGCTAGTN]
consensusID : consensus_9112#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 408 fasta sequence
[TCGCCCGAGGTNATTTCTAGTATTTGTGACTATTGGAGAAGAAACTGGAGGGATGTTACGAAGTCCGAAGGAGTGCGACATTGTACCATAACAAACCATTGTAATGCATAACCCTTGTACAATGGAACAATCTTGATTCCGGATCGCTTTTCTGGTCAAAAGCGAGCAACAGTGCCGGAGAGCCAAGATTAGCCAAGTAAATCAAACAAACAATGTCCCCTTATCGGTAACGGCAGGAGTGAGCAGCAGCAAATGAGCCGCGAAACAACAGGAACGAATTTACATTCGTGAAAAACACACAGCAAGAAAAGTGCGCAAGTGAAGCTCCCGTGTGCCCGATGCCGTCGAGGCTTTTAGCAATTATCATAGCTTTATGTGAAACAATTTTAACCGGTCATAATTANACTA]
[+] EMBL AL930285 [TCGCCCGAGGTNATTTCTAGTATTTGTGACTATTGGAGAAGAAACTGGAGGGATGTTACGAAGTCCGAAGGAGTGCGACATTGTACCATAACAAACCATTGTAATGCATAACCCTTGTACAATGGAACAATCTTGATTCCGGATCGCTTTTCTGGTCAAAAGCGAGCAACAGTGCCGGAGAGCCAAGATTAGCCAAGTAAATCAAACAAACAATGTCCCCTTATCGGTAACGGCAGGAGTGAGCAGCAGCAAATGAGCCGCGAAACAACAGGAACGAATTTACATTCGTGAAAAACACACAGCAAGAAAAGTGCGCAAGTGAAGCTCCCGTGTGCCCGATGCCGTCGAGGCTTTTAGCAATTATCATAGCTTTATGTGAAACAATTTTAACCGGTCATAATTANACTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9112#0 ACTGGCTACAAAACTGGACAACATTTCCATGCGCTCGGATGCCAGCAAGATGCTTAACAT 60
consensus_9112#3 ------------------------------------------------------------
consensus_9112#1 ------------------------------------------------------------
consensus_9112#4 ------------------------------------------------------------
consensus_9112#2 ------------------------------------------------------------
consensus_9112#0 TCCTATTCCGGAGCTGAAAACAATCAACAATCTACCGCCCCTGGATACGCCACTCGCAAT 120
consensus_9112#3 ------------------------------------------------------------
consensus_9112#1 ------------------------------------------------------------
consensus_9112#4 ------------------------------------------------------------
consensus_9112#2 ------------------------------------------------------------
consensus_9112#0 GCTGTCGGAGAAACTATCGTCATTTTCTTTTGATCAAGATAAGTAGCGATCATGTCCCTT 180
consensus_9112#3 ------------------------------------------------------------
consensus_9112#1 ------------------------------------------------------------
consensus_9112#4 ------------------------------------------------------------
consensus_9112#2 ------------------------------------------------------------
consensus_9112#0 TCATCCTGACAGGCAGTCGATTGAGTCGACCACAAGCTGTCGGTGACGGTCAGGCACTCG 240
consensus_9112#3 ------------------------------------------------------------
consensus_9112#1 ------------------------------------------------------------
consensus_9112#4 ------------------------------------------------------------
consensus_9112#2 ------------------------------------------------------------
consensus_9112#0 CGCGAGACCCTCACAAACGCGGGCTATATCCTTTTCTTGGAGATTGATCGACTGCTTTCC 300
consensus_9112#3 ------------------------------------------------------------
consensus_9112#1 ------------------------------------------------------------
consensus_9112#4 ------------------------------------------------------------
consensus_9112#2 ------------------------------------------------------------
consensus_9112#0 CTTTCGGTCACGGGTTAAAGCTTCATCCCAGCCCGGCAAGGATCATAATCCTGTTTGCCA 360
consensus_9112#3 ------------------------------------------------------------
consensus_9112#1 ------------------------------------------------------------
consensus_9112#4 ------------------------------------------------------------
consensus_9112#2 ------------------------------------------------------------
consensus_9112#0 TTGGAAGGATTTCCGAGGAGATCGATTTTCCGAAAGGGATATATTTCACTGGAAGTTGAA 420
consensus_9112#3 ------------------------------------------------------------
consensus_9112#1 ------------------------------------------------------------
consensus_9112#4 ------------------------------------------------------------
consensus_9112#2 ------------------------------------------------------------
consensus_9112#0 TTGTTCGTGGAAACGATAGTATAGCATCAACGAGGTAATTCCTACGATGCTGCATCAGCC 480
consensus_9112#3 ------------------------------------------------------------
consensus_9112#1 ------------------------------------------------------------
consensus_9112#4 ------------------------------------------------------------
consensus_9112#2 ------------------------------------------------------------
consensus_9112#0 CTATTACGCTTAAGTATCATAAAGTACCTTTCAGGCCCTGTGTGAAGGACTCGATATTAT 540
consensus_9112#3 ------------------------------------------------------------
consensus_9112#1 ------------------------------------------------------------
consensus_9112#4 ------------------------------------------------------------
consensus_9112#2 ------------------------------------------------------------
consensus_9112#0 TTAAGTTTAAATTGATCGTAACGTTAAATTTATTCATCGCCTAGGGAGAAAAGAGACAGT 600
consensus_9112#3 ------------------------------------------------------------
consensus_9112#1 ---------------------------------GCAGATCCCGCACGAGNGNGAGACAGT 27
consensus_9112#4 ------------------------------------------------------------
consensus_9112#2 ----------------------------------------------------GATGGCTC 8
consensus_9112#0 GGGCCAATTAAGCGAACCTGATTCACATTACTCAGATCGGGAGCGGTGCAAGCACCAAAG 660
consensus_9112#3 ------------------------------------------------------------
consensus_9112#1 GGGCAATTAAGCGACACCTGATTCACATTACTCAGATCGGGAGCGGTGCAAGCACCAAAG 87
consensus_9112#4 ------------------------------------------------------------
consensus_9112#2 AGCAGAATCGCCCCGACGGTATTCACATTACTCAGATCGGGAGCGGTGCAAGCACCAAAG 68
consensus_9112#0 AAAGCTCACCAAAACTCGTACAATTTCTAGTATTTGTGACTATTGGAGAAGAAACTGGAG 720
consensus_9112#3 -------------------------------------GATCGCCGAGGT--TAACTGGAG 21
consensus_9112#1 AAAGCTCACCAAAACTCGTACAATTTCTAGTATTTGTGACTATTGGAGAAGAAACTGGAG 147
consensus_9112#4 ----------TCGCCCGAGGTNATTTCTAGTATTTGTGACTATTGGAGAAGAAACTGGAG 50
consensus_9112#2 AAAGCTCACCAAAACTCGTACAATTTCTAGTATTTGTGACTATTGGAGAAGAAACTGGAG 128
** * * ********
consensus_9112#0 GGATGTTACGAAGTCCGAGGGAGTGCGACATTGTACCACAACAAACCATTGTAATGCATG 780
consensus_9112#3 GGATGTTACGAAGTCCGAAGGAGTGCGACATTGTACCATAACAAACCATTGTAATGCATA 81
consensus_9112#1 GGATGTTACGAAGTCCGAAGGAGTGCGACATTGTACCATAACAAACCATTGTAATGCATA 207
consensus_9112#4 GGATGTTACGAAGTCCGAAGGAGTGCGACATTGTACCATAACAAACCATTGTAATGCATA 110
consensus_9112#2 GGATGTTACGAAGTCCGAAGGAGTGCGACATTGTACCATAACAAACCATTGTAATGCATA 188
****************** ******************* ********************
consensus_9112#0 ACCCTTGTACAATGGAACAATCTTGATTCCGGATCGCTTTTCTGGTCAAA--AGCGAG-C 837
consensus_9112#3 ACCCTTGTACAATGGAACAATCTTGATTCCGGATCGCTTTTCTGGTCAAA--AGCGAG-C 138
consensus_9112#1 ACCCTTGTACAATGGAACAATCTTGATTCCGGATCGCTTTTCTGGTCAAA--AGCGAG-C 264
consensus_9112#4 ACCCTTGTACAATGGAACAATCTTGATTCCGGATCGCTTTTCTGGTCAAA--AGCGAG-C 167
consensus_9112#2 ACCCTTGTACAATGGAACAATCTTGATTCCGGATCGCTTTTCTGGTCANACAAGCGAGGC 248
************************************************ * ****** *
consensus_9112#0 AACAGTGCCGGAGAGCCAAGATTAGCCAA-GTAAACCAAACACACAATGTCCCCTTATCG 896
consensus_9112#3 AACAGTGCCGGAGAGCCAAGATTAGCCAA-GTAAATCAAACAAACAATGTCCCCTTATCG 197
consensus_9112#1 AACAGTGCCGGAGAGCCAAGATTAGCCAA-GTAAATCAAACAAACAATGTCCCCTTATCG 323
consensus_9112#4 AACAGTGCCGGAGAGCCAAGATTAGCCAA-GTAAATCAAACAAACAATGTCCCCTTATCG 226
consensus_9112#2 AACAGTGCCGGAGAGCCAAGATTAGCAAGTANACATCAAACAAACAATGTCCC-TTATCG 307
************************** * * * ****** ********** ******
consensus_9112#0 GTAACGGCAGGAGTGAGCAGCA-GCAA--ATGAGCCGCGAAA-CAA--CAGGAACGAATT 950
consensus_9112#3 GTAACGGCAGGAGTGAGCAGCA-GCAA--ATGAGCCGCGAAA-CAA--CAGGAACGAATT 251
consensus_9112#1 GTAACGGCAGGAGTGAGCAGCA-GCAA--ATGAGCCGCGAAA-CAA--CAGGAACGAATT 377
consensus_9112#4 GTAACGGCAGGAGTGAGCAGCA-GCAA--ATGAGCCGCGAAA-CAA--CAGGAACGAATT 280
consensus_9112#2 GTAACGGCAGGAGTGAGCAGCACGCCACAATGAGCCGCGAAAACAAACCAGGAACGAATT 367
********************** ** * ************* *** ************
consensus_9112#0 TA-CATTCGT--GAAAAAC--ACACAGCAAGAAAAGTGCGCAAGTCAAGCTCCCGTGTGC 1005
consensus_9112#3 TA-CATTCGT--GAAAAAC--ACACAGCAAGAAAAGTGCGCAAGTGAAGCTCCCGTGTGC 306
consensus_9112#1 TA-CATTCGT--GAAAAAC--ACACAGCAAGAAAAGTGCGCAAGTGAAGCTCCCGTGTGC 432
consensus_9112#4 TA-CATTCGT--GAAAAAC--ACACAGCAAGAAAAGTGCGCAAGTGAAGCTCCCGTGTGC 335
consensus_9112#2 TAACATTCGTTGANAAAACCAACACAGCAAGAAAAGTGCGCAAGTGAAGCTCCCGTGTGC 427
** ******* ***** ************************ **************
consensus_9112#0 CCGATGCCGTC---GAGGCTTTTAGCAATT--AT-CATAGCTTTATGTGAAACAATTTTA 1059
consensus_9112#3 CCGATGCCGTC---GAGGCTTTTAGCAATT--AT-CATAGCTTTATGTGAAACAATTTTA 360
consensus_9112#1 CCGATGCCGTC---GAGGCTTTTAGCAATT--AT-CATAGCTTTATGTGAAACAATTTTA 486
consensus_9112#4 CCGATGCCGTC---GAGGCTTTTAGCAATT--AT-CATAGCTTTATGTGAAACAATTTTA 389
consensus_9112#2 CCGATGCCGATACAGAGGCTTTTAGCAATTTGATACATAGGCTCTTATGTGACCACCCAC 487
********* **************** ** ***** * * ** ** *
consensus_9112#0 ACCG-TCATAATTAATAATTTATTATTCGGCCACAAAGAGAAAGGTGTGATTGTTACCTG 1118
consensus_9112#3 ACCG-TCATAATTAATAATTTATTATTCGGCCATAAAGAGAAAGGTGTGATTGTTACCTG 419
consensus_9112#1 ACCG-TCATAATTAATAATTTATTATTCGGCCATAAAGAGAAAGGTGTGATTGTTACCTG 545
consensus_9112#4 ACCGGTCATAATTAN--ACTA--------------------------------------- 408
consensus_9112#2 ATCT-TCTAANCCCGTTCCATACAATTC-------AAATNAAATTTNTAATT-CTACTTC 538
* * ** *
consensus_9112#0 TTAGCGAGTGTTTCTGCATGTTATCG-ATTTTATCGACGAATTGTTTCTGT-TATTAAAA 1176
consensus_9112#3 TTAGCGAGTGTTTCTGCATGTTATCG-ATTTTATCGACGCATTGTTTCTGTCTATTAAAC 478
consensus_9112#1 TTAGCGAGTGTTTCTGCATGTTATCG-ATTTTATCGACGCATTGTTTCTGT-TATTAAAA 603
consensus_9112#4 ------------------------------------------------------------
consensus_9112#2 CCNGCGGCGCCATTGACACACAGGCACGGAACAACAAGGGGCTGTTNCGACATCTCGGGT 598
consensus_9112#0 G--ATTTTAATCGTTGAGCTGGGG-TTGTGC--AATAGCTCG-CTAGATTGTAA--GTAA 1228
consensus_9112#3 AGCATTTTAATCGTTGAGCTGGGG-TTGTGC--AATAGCTCG-CTAGTTTGTAA--GCAA 532
consensus_9112#1 G--ATTTTAATCGTTGAGCTGGGGGTTGTGGCAAATAGCTCGGCTAGTTTGTAAAGGCAA 661
consensus_9112#4 ------------------------------------------------------------
consensus_9112#2 G------CAACCCCC---CTGGAGTTCTCANACACCGGAACNGATGGATCACTA----CA 645
consensus_9112#0 AA-GGTGAGGATAATTTTT---AGTTAAAA---AAAGGCTAGG--CCATATCC-AATGGC 1278
consensus_9112#3 AAAGGTGAGGATAATTTTT---AGTTCAAACANAAAGGCTAGG--CCATATCC-AATGGC 586
consensus_9112#1 AAAGGTGAGGATAATTTTTTCAGGTTTAACAAAAAAGGCTAGGG-CCATATCCCAATGGC 720
consensus_9112#4 ------------------------------------------------------------
consensus_9112#2 CTTGGCCAACTTGGTTTTCAGATCCNGAATTCTCNATACTAAATTCCGAAGCCAGACCCN 705
consensus_9112#0 G-GGTTCGT-TTGCCAA-TTG-TA-TTGATTGCA--TGCA-TAAAC-GTTAATTTCTAG- 1328
consensus_9112#3 AAGGTTCGTATCGCCAAATTG-TACTTGATTGCCATTGCAATAAACCGTTATTTTGTAGC 645
consensus_9112#1 AGGGTTCGGTTCGCCAAATTGGTATTTGATTGC---TGCA--TAACCGTTATTTTGNACA 775
consensus_9112#4 ------------------------------------------------------------
consensus_9112#2 ACTNTTAGTATATCCC--TGGCTTCACATTCTCAAAAGCACACGGAAGTTNTGNTG---- 759
consensus_9112#0 ATTTAATCGT--TTGCT-GCGCTAGTGCCATGTTTATGAACAATCAG-TTGTCCTTACAA 1384
consensus_9112#3 ATTTANATGGAGTTGCT-GCGCGAGTGCCATGTTTATGAACACTCANGTTGTCCTTACAA 704
consensus_9112#1 ATTCATGGGA--TTGCTTGCCGCAGTTCCCTCGTTTTGACCCACTCG-TNTCCTTCAC-- 830
consensus_9112#4 ------------------------------------------------------------
consensus_9112#2 ------------------------------------------------------------
consensus_9112#0 AA-CACG-TCATGTTTGCTTG-TGCGAGGCCTTCAAACCTAAGCTAGTATTAAGTTCCAC 1441
consensus_9112#3 AAACACGGTCATGTACGCTTGCTGCGAGGC-TTCAAACCTAAGCTAGTN----------- 752
consensus_9112#1 ------------------------------------------------------------
consensus_9112#4 ------------------------------------------------------------
consensus_9112#2 ------------------------------------------------------------
consensus_9112#0 CGTTGTTAATGTACTTAATAAATTTTCT 1469
consensus_9112#3 ----------------------------
consensus_9112#1 ----------------------------
consensus_9112#4 ----------------------------
consensus_9112#2 ----------------------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||