cluster # 9238

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Anopheles gambiae
cluster # 9238 cluster # 9238 Sequences # 15 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9238#0 length = 2143 sequences # 13

consensus_9238#1 length = 471 sequences # 1
consensus_9238#2 length = 160 sequences # 1

consensusID : consensus_9238#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 13
consensus length = 2143
fasta sequence

                              [CCGCTTCTTCCGCTTCGCCACGCAGTACTGCATCGATCTGACGTATCGCAACATGAACGAGCCGAACGCGAAAACGAAAATCTTCCAGTTTATCGACGCGTACGTTCGGCTGATTGCGCTGCTGGTAAAGCACTCCGGTGAGAGTGGCAGCACCAACACGAAGCTGAATCTGCTGAATAAGATTCTCGGTATCATCATCGGCATACTGCTGCACGATCAGGAGGTCCACACGACCGCGTTCCAGCAGGTCGGCTACCATCGCATCTTCGCCATGCTCTTCCTCGAGCTGACCACGCACGATCCGATCCTGGAGAACATCAGCATCAGCGTGATCACGGCGTTCTGC-CACACG-TTCCACAT-AC-T-GCGCCCGTCCGCGGCGCCCGGCTTCTGCTACTCCTGGCTTGAGCTGATCGCGCACCGCGTCTTCATCGGGCGCGTGCTCGCCCAGATCCCGCAGCAGAAGGGCTGGCACATGTACTCGCAGCTCCTGATCGACCTGTTCAAGTATCTGGCCCCGTTCCTGCGCAATGCCGAGCTGGCCAAGCCGGTGCAGCATCTGTACAAGGGTACGCTGCGCGTGCTGCTCGTGCTGCTGCACGATTTTCCCGAGTTTTTGTGCGACTACCATTTCGCGTTCTGCGACGTCATCCCGTCAAACTGCATCCAGATGCGCAACCTGATCCTGTCGCCGTACCCGCGCAACATGCGCCTGCCCGATCCGTTCACGCCGAACCTGAANGTCGATATGCTGAATGATATTGGAGGATCGCCACGGATTTCCATCAACTACGCGTCCTCCATNNAGCCGGTAAGCTTCAAGAAGGATCTCGACTCGTACCTGAAGGCCCGCGCACCGGTCACCTTCCTGTCGGAGTTGCGCTCCAATCTGCAGATCTCGAACGAGGTCGGCTCGCGCTACAATATTCCGCTGATGAACGCGCTGGTGCTGTACGTTGGCACCCAAGCAATTGCTCATATTCGATCGAAAAATTTGGGCCCAACAATGTCCACGATCATACACAGCGCGCACATGGATATCTTCCAAAACCTGGCGGTCGATCTGGACACGGAGGGACGCTACCTGTTCCTGAACGCGATCGCCAACCAGCTGCGCTATCCGAACAGCCACACGCACTACTTCAGCTGCTGCATACTGTACCTGTTCGCAGAGGCAAATTCGGAAGCCATTCAGGAACAAATCACGCGCGTTTTGCTCGAGCGCCTGATCGTCAATCGTCCGCATCCGTGGGGTCTGCTGATCACGTTCATCGAGCTGATCAAAAATCCGATCTACAAGTTCTGGGATCACGATTTCGTGCACTGTGCGCCAGAAATTGAACGACTTTTCGAATCGGTGGCAAAGTCGTGCATGGTCACGAGCAAGAGCCAGCAGCAAATTCAAAACGTTGAGCCGGATATCACCGAGTGCAGCTAAATATATGGTTGCCAACATCAGGCTCCAGCTTTGCGGCAACACAGCATCGATAATATCAAACTCCCGAAACGTCAGCCCGAAGAAAAAGAATTACAAAAAAAAACCCGTTGGTGGTCGGTTGACGATAAAACTGAACAGAATTAGGCAAACACACACCATCTGTACATACGCGATACCATTGTCACAACAAGTCAGTGCACGTCCTCTTTAATGTAGGGAAATTGATGGATTAGATGGAGAACAGCCAAGCATCAAAAGTCAAACGCGAAACTATCTTAGTTCATTTGAGCCGATACTGTACATTTTGCGAGCGAGAACAGGTTTAGGAAAACGTGTGTAAGTAATCGAACACCGAAACGATTCGTCCCTAGCCACGGTAAC-TTTTTCCTCCGTCACCTTTGGAGTGGCCGCTGAAGTTGACGGGAGATTGCCGTTTCCTCCCAAGGTACAGCTTAACGTTGCTTTCGGTCGGTGTGCGAATCTACACGTCTTTTTTGGATTGTTGTGAGTAATAATGTAAGTAGCGATGTACAGAGTTGCAAAATAGTACTGTAAAAGGATGTTCTAGATCGGTGCGATACATTTTACTCGATGCACTAGATATAGATATAAAATTGTTCGTAATAAGTGTAATAAATAAGGGATTCGAATTTGAAATCTAA--AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTTAAAA]

[+] EMBL BM622947             [CCGCTTCTTCCGCTTCGCCACGCAGTACTGCATCGATCTGACGTATCGCAACATGAACGAGCCGAACGCGAAAACGAAAATCTTCCAGTTTATCGACGCGTACGTTCGGCTGATTGCGCTGCTGGTAAAGCACTCCGGTGAGAGTGGCAGCACCAACACGAAGCTGAATCTGCTGAATAAGATTCTCGGTATCATCATCGGCATACTGCTGCACGATCAGGAGGTACACACGACCGCGTTCCAGCAGGTCGGCTACCATCGCATCTTCGCCATGCTCTTCCTCGAGCTAACCACGCACGATCCGATCCTGGAGAACATCAGCATCAGCGTGATCACGGCGTTCTGC CACACG TTCCACAT AC T GCGCCCGTCCGCGGCGCCCGGCTTCTGCTACTCCTGGCTCGAGCTGATCGCGCACCGCGTCTTCATCGGGCGCGTGCTCGCCCAGATCCCGCAGCAGAAGGGCTGGCACATGTACTCGCAGCTCCTGATCGACCTGTTCAAGTATCTGGCCCCGTTCCTGCGCAATGCCGAGCTGGCCAAGCCGGTGCAGCATCTGTACAAGGGTACGCTGCGCGTGCTGCTGGTGCTGCTGCACGATTTTCCCGAGTTTTTGTGCGACTACCATTTCGCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[-] EMBL AGA282447            [                                                                                                     ACGTTCGGCTGATTGCGCTGCTGGTAAAGCACTCCGGTGAGAGTGGCAGCACCAACACGAAGCTGAATCTGCTGAATAAGATTCTCGGTATCATCATCGGCATACTGCTGCACGATCAGGAGGTCCACACGACCGCGTTCCAGCAGGTCGGCTACCATCGCATCTTCGCCATGCTCTTCCTCGAGCTGACCACGCACGATCCGATCCTGGAGAACATCAGCATCAGCGTGATCACGGCGTTCTGC CACACG TTCCACAT AC T GCGCCCGTCCGCGGCGCCCGGCTTCTGCTACTCCTGGCTTGAGCTGATCGCGCACCGCGTCTTCATCGGGCGCGTGCTCGCCCAGATCCCGCAGCAGAAGGGCTGGCACATGTACTCGCAGCTCCTGATCGACCTGTTCAAGTATCTGGCCCCGTTCCTGCGCAATGCCGAGCTGGCCAAGCCGGTGCAGCATCTGTAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL AGA283204            [                                                                                                                               AAGCACTCCGGTGAGAGTGGCAGCACCAACACGAAGCTGAATCTGCTGAATAAGATTCTCGGTATCATNATCGGCATACTGCTGCACGATCAGGAGGTCCACACGACCGCGTTCCAGCAGGTCGGCTACCATCGCATNTTCGCCATGCTCTTCCTCGAGCTGACCACGCACGATCCGATCCTGGAGAACATCAGCATCAGCGTGATCACGGCGTTCTGC CACACG TTCCACAT AC T G                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL BX622587             [                                                                                                                                                                 AGCTGAATCTGCTGAATAAGATTCTCGGTATCATCATCGGCATACTGCTGCACGATCAGGAGGTCCACACGACCGCGTTCCAGCAGGTCGGCTACCATCGCATCTTCGCCATGCTCTTCCTCGAGCTGACCACGCACGATCCGATCCTGGAGAACATCAGCATCAGCGTGATCACGGCGTTCTGC CACACG TTCCACAT AC T GCGCCCGTCCGCGGCGCCCGGCTTCTGCTACTCCTGGCTTGAGCTGATCGCGCACCGCGTCTTCATCGGGCGCGTGCTCGCCCAGATCCCGCAGCAGAAGGGCTGGCACATGTACTCGCAGCTCCTGATCGACCTGTTCAAGTATCTGGCCCCGTTCCTGCGCAATGCCGAGCTGGCCAAGCCGGTGCAGCATCTGTACAAGGGTACGCTGCGCGTGCTGCTCGTGCTGCTGCACGATTTTCCCGAGTTTTTGTGCGACTACCATTTCGCGTTCTGCGACGTCATCCCGTCAAACTGCATCCAGATGCGCAACCTGATCCTGTCGCCGTACCCGCGCAACATGCGCCTGCCCGATCCGTTCACGCCGAACCTGAANGTCGATATGCTGAAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL BX624339             [                                                                                                                                                                                                                                                                                                                                                    actTGCTCACACGTTTCCACATNACATNACGCCCGTCCGCGGCGCCCGGCTTCTGCTACTCCTGGCTTGAGCTGATCGCGCACCGCGTCTTCATCGGGCGCGTGCTCGCCCAGATCCCGCAGCAGAAGGGCTGGCACATGTACTCGCAGCTCCTGATCGACCTGTTCAAGTATCTGGCCCCGTTCCTGCGCAATGCCGAGCTGGCCAAGCCGGTGCAGCATCTGTACAAGGGTACGCTGCGCGTGCTGCTCGTGCTGCTGCACGATTTTCCCGAGTTTTTGTGCGACTACCATTTCGCGTTCTGCGACGTCATCCCGTCAAACTGCATCCAGATGCGCAACCTGATCCTGTCGCCGTACCCGCGCAACATGCGCCTGCCCGATCCGTTCACGCNGAACCTGAANGTCGATATGCTGAATGATATTGGAGGATCGCCACGGATTTCCATCAACTACGCGTCCTCCATNNAGCCGGTAAGCTTCAAGAAGGATCTCGAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL BX625633             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    cacgaggGATTTTCCCGAGTTTTTGTGCGACTACCATTTCGCGTTCTGCGACGTCATCCCGTCAAACTGCATCCAGATGCGCAACCTGATCCTGTCGCCGTACCCGCGCAACATGCGCCTGCCCGATCCGTTCACGCCGAACCTGAAGGTCGATATGCTGAATGATATTGGAGGATCGCCACGGATTTCCATCAACTACGCGTCCTCCATTCAGCCGGTAAGCTTCAAGAAGGATCTCGACTCGTACCTGAAGGCCCGCGCACCGGTCACCTTCCTGTCGGAGTTGCGCTCCAATCTGCAGATCTCGAACGAGGTCGGCTCGCGCTACAATATTCCGCTGATGAACGCGCTGGTGCTGTACGTTGGCACCCAAGCAATTGCTCATATTCGATCGAAAAATTTGGGCCCAACAATGTCCACGATCATACACAGCGCGCACATGGATATCTTCCAAAACCTGGCGGTCGATCTGGACACGGAGGGACGCTACCTGTTCCTGAACGCGATCGCCAACCAGCTGCGCTATCCGAACAGCCACACGCACTACTTCAGCTGCTGCATACTGTACCTGTTCGCAGAGGCAAATTCGGAAGCCATTCAGGAACAAATCACGCGCGTTTTGCTCGAGCGCCTGATCGTCAATCGTCCGCATCCGTGGGGTCTGCTGATCACGTTCATCGAGCTGATCAAAAATCCGATCTACAAGTTCTGGGATCACGATTTCGTGCACTGTGCGCCAGAAATTGAACGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL BX625662             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      CGCTACAATATTCCGCTGATGAACGCGCTGGTGCTGTACGTTGGCACCCAAGCAATTGCTCATATTCNATCGAAAAATTTGGGCCCAACAATGTCCACGATCATACACAGCGCGCACNTGGATATCTTCCAAAACCTGGCGGTCGATCTGGACACNGAGGGACNCTACCTGTTCCTGAACGCGATCGCCAACCAGCTGCGCTATCCGAACAGCCACACGCACTACTTCANCTGCTGCATACTGNACCTGTTCGCAGAGGCAAATTCNGAAGCCATTCAGGAACAAATCACGCNCGTTTTGCTCNAGCGCCTGATCGTCAATCGNCCGCATCCGNGGGGTCTGCTGATCACGTTCATCGAGCTGATCAANAATCCGATCTACAAGTTCTGGGATCACGATTTCGTGCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL BX608542             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           GCGCTATCCGAACAGCCACACGCACTACTTCAGCTGCTGCATACTGTACCTGTTCGCAGAGGCAAATTCGGAAGCCATTCAGGAACAAATCACGCGCGTTTTGCTCGAGCGCCTGATCGTCAATCGTCCGCATCCGTGGGGTCTGCTGATCACGTTCATCGAGCTGATCAAAAATCCGATCTACAAGTTCTGGGATCACGATTTCGTGCACTGTGCGCCAGAAATTGAACGACTTTTCGAATCGGTGGCAAAGTCGTGCATGGTCACGAGCAAGAGCCAGCAGCAAATTCAAAACGTTGAGCCGGATATCACCGAGTGCAGCTAAATATATGGTTGCCAACATCAGGCTCCAGCTTTGCGGCAACACAGCATCGATAATATCAAACTCCCGAAACGTCAGCCCGAAGAAAAAGAATTACAAAAAAAAACCCGTTGGTGGTCGGTTGACGATAAAACTGAACAGAATTAGGCAAACACACACCATCTGTACATACGCGATACCATTGTCACAACAAGTCAGTGCACGTCCTCTTTAATGTAGGGAAATTGATGGATTAGATGGAGAACAGCCAAGCATCAAAAGTCAAACGCGAAACTATCTTAGTTCATTTGAGCCGATACTGTACATTTTGCGAGCGAGAACAGGTTTAGGAAAACGTGTGTAAGTAATCGAACACCGAAACGATTCGTCCCTAGCCACGGTAAC TTTTTCCTCCGTCACCTTTGGAGTGGCCGCTGAAGTTGACGGGAGATTGCCGTTTCCTC                                                                                                                                                                                                                                                                              ]
[+] EMBL BX609198             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       TGTACCTGTTCGCAGAGGCAAATTCGGAAGCCATTCAAGAACAAATCACGCGCGTTTTGCTCGAGCGCCTGATCGTCAATCGTCCGCATCCGTGGGGTCTGCTGATCACGTTCATCGAGCTGATCAAAAATCCGATCTACAAGTTCTGGGATCACGATTTCGTGCACTGTGCGCCAGAAATTGAACGACTTTTCGAATCGGTGGCAAAGTCGTGCATGGTCACGAGCAAGAGCCAGCAGCAAATTCAAAACGTTGAGCCGGATATCACCGAGTGCAGCTAAATATATGGTTGCCAACATCAGGCTCCAGCTTTGCGGCAACACAGCATCGATAATATCAAACTCCCGAAACGTCAGCCCGAAGAAAAAGAATTACAAAAAAAAACCCGTTGGTGGTCGGTTGACGATAAAACTGAACAGAATTAGGCAAACACACACCATCTGTACATACGCGATACCATTGTCACAACAAGTCAGTGCACGTCCTCTTTAATGTAGGGAAATTGATGGATTAGATGGAGAACAGCCAAGCATCAAAAGTCAAACGCGAAACTATCTTAGTTCATTTGAGCCGATACTGTACATTTTGCGAGCGAGAACAGGTTTAGGAAAACGTGTGTAAGTAATCGAACACCGAAACGATTCGTCCCTAGCCACGGTAAC TTTTTCCTCCGTCACCTTTGGAGTGGCCGCTGAAGTTGACG                                                                                                                                                                                                                                                                                                ]
[+] EMBL BX612929             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           TCAAAACGTTGAGCCGGATATCACCGAGTGCAGCTAAATATATGGTTGCCAACATCAGGCTCCAGCTTTGCGGCAACACAGCATCGATAATATCAAACTCCCGAAACGTCAGCCCGAAGAAAAAGAATTACAAAAAAAAACCCGTTGGTGGTCGGTTGACGATAAAACTGAACAGAATTAGGCAAACACACACCATCTGTACATACGCGATACCATTGTCACAACAAGTCAGTGCACGTCCTCTTTAATGTAGGGAAATTGATGGATTAGATGGAGAACAGCCAAGCATCAAAAGTCAAACGCGAAACTATCTTAGTTCATTTGAGCCGATACTGTACATTTTGCGAGCGAGAACAGGTTTAGG  AACGTGTGTAAGTAATCGAACACCGAAACGATTCGTCCCTAGCCACGGTAAC TTTTTCCTCCGTCACCTTTGGAGTGGCCGCTGAAGTTGACGGGAGATTGCCGTTTCCTCCCAAGGTACAGCTTAACGTTGCTTTCGGTCGGTGTGCGAATCTACACGTCTTTTTTGGATTGTTGTGAGTAATAATGTAAGTAGCGATGTACAGAGTTGCAAAATAGTACTGTAAAAGGATGTTCTAGATCGGTGCGATACATTTTACTCGATGCACTAGATATAGATATAAAATTGTTCGTAATAAGTGTAATAAATAAGGGATTCGAA                                                            ]
[+] EMBL AGA284901            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             AACATCAGGCTCCAGCTTTGCGGCAACACAGCATCGATAATATCAAACTCCCGAAACGTCAGCCCGAAGAAAAAGAATTACAAAAAAAAACCCGTTGGTGGTCGGTTGACGATAAAACTGAACAGAATTAGGCAAACACACACCATCTGTACATACGCGATACCATTGTCACAACAAGTCAGTGCACGTCCTCTTTAATGTAGGGAAATTGATGGATTAGATGGAGAACAGCCAAGCATCAAAAGTCAAACGCGAAACTATCTTAGTTCATTTGAGCCGATACTGTACATTTTGCG                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[-] EMBL AGA283612            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ACGTCCTCTTTAATGTAGGGAAATTGATGGATTAGATGGAGAACAGCCAAGCATCAAAAGTCAAACGCGAAACTATCTTAGTTCATTTGAGCCGATACTGTACATTTTGCGAGCGAGAACAGGTTTAGGAAAACGTGTGTAAGTAATCGAACACCGAAACGATTCGTCCCTAGCCACGGTAAC TTTTTCCTCCGTCACCTTTGGAGTGGCCGCTGAAGTTGACGGGAGATTGCCGTTTCCTCCCAAGGTACAGCTTAACGTTGCTTTCGGTCGGTGTGCGAATCTACACGTCTTTTTTGGATTGTTGTGAGTAATAATGTAAGTAGCGATGTACAGAGTTGCAAAATAGTACTGTAAAAGGATGTTCTAGATCGGTGCGATACATTTTACTCGATGCACTAGATATAGATATAAAATTGTTCGTAATAAGTGTAATAAATAAGGGATTCGAATTTGAAATCTAA  AAAAAA                                        ]
[+] EMBL CNS08RDH             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GATAGAGAACAGCCAAGCATCAAACGTCAAACGCGAAACTATCTTAGTTCATTTGAGCCGAAACTGTACATTTTGCGAGCGAGAACAGGTTTAGGAAAACGTGTGTAAGTAATCGAAAACCGAACCGATTCGTCCCCAGCCACGGTTACAATTTTCTCCCGTTACCTTTGGAGTGGCCGCTAAAGGTGACGGGAGATTGCCGTTTCCTCCCAAGGTACAGCTTAACGTTGCTTTTGGTCGGTGTGCGAATCTACACGTCTTTTTTGGGTTGTTGTGAGTAATAATGTAAGTAGCGATGTACAGAGTTGCAAAATAGTACTGTAAAAGGATGTTCTAGATCGGTGCGATACATTTTACTCGATGCACTAGATATAGATATAAAATTGTTCGTAATAAGTGTAATAAATAAGGGATTCGAATTTGAAATCTAACGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTTAAAA]




>consensus_9238#0
CCGCTTCTTCCGCTTCGCCACGCAGTACTGCATCGATCTGACGTATCGCAACATGAACGA
GCCGAACGCGAAAACGAAAATCTTCCAGTTTATCGACGCGTACGTTCGGCTGATTGCGCT
GCTGGTAAAGCACTCCGGTGAGAGTGGCAGCACCAACACGAAGCTGAATCTGCTGAATAA
GATTCTCGGTATCATCATCGGCATACTGCTGCACGATCAGGAGGTCCACACGACCGCGTT
CCAGCAGGTCGGCTACCATCGCATCTTCGCCATGCTCTTCCTCGAGCTGACCACGCACGA
TCCGATCCTGGAGAACATCAGCATCAGCGTGATCACGGCGTTCTGCCACACGTTCCACAT
ACTGCGCCCGTCCGCGGCGCCCGGCTTCTGCTACTCCTGGCTTGAGCTGATCGCGCACCG
CGTCTTCATCGGGCGCGTGCTCGCCCAGATCCCGCAGCAGAAGGGCTGGCACATGTACTC
GCAGCTCCTGATCGACCTGTTCAAGTATCTGGCCCCGTTCCTGCGCAATGCCGAGCTGGC
CAAGCCGGTGCAGCATCTGTACAAGGGTACGCTGCGCGTGCTGCTCGTGCTGCTGCACGA
TTTTCCCGAGTTTTTGTGCGACTACCATTTCGCGTTCTGCGACGTCATCCCGTCAAACTG
CATCCAGATGCGCAACCTGATCCTGTCGCCGTACCCGCGCAACATGCGCCTGCCCGATCC
GTTCACGCCGAACCTGAANGTCGATATGCTGAATGATATTGGAGGATCGCCACGGATTTC
CATCAACTACGCGTCCTCCATNNAGCCGGTAAGCTTCAAGAAGGATCTCGACTCGTACCT
GAAGGCCCGCGCACCGGTCACCTTCCTGTCGGAGTTGCGCTCCAATCTGCAGATCTCGAA
CGAGGTCGGCTCGCGCTACAATATTCCGCTGATGAACGCGCTGGTGCTGTACGTTGGCAC
CCAAGCAATTGCTCATATTCGATCGAAAAATTTGGGCCCAACAATGTCCACGATCATACA
CAGCGCGCACATGGATATCTTCCAAAACCTGGCGGTCGATCTGGACACGGAGGGACGCTA
CCTGTTCCTGAACGCGATCGCCAACCAGCTGCGCTATCCGAACAGCCACACGCACTACTT
CAGCTGCTGCATACTGTACCTGTTCGCAGAGGCAAATTCGGAAGCCATTCAGGAACAAAT
CACGCGCGTTTTGCTCGAGCGCCTGATCGTCAATCGTCCGCATCCGTGGGGTCTGCTGAT
CACGTTCATCGAGCTGATCAAAAATCCGATCTACAAGTTCTGGGATCACGATTTCGTGCA
CTGTGCGCCAGAAATTGAACGACTTTTCGAATCGGTGGCAAAGTCGTGCATGGTCACGAG
CAAGAGCCAGCAGCAAATTCAAAACGTTGAGCCGGATATCACCGAGTGCAGCTAAATATA
TGGTTGCCAACATCAGGCTCCAGCTTTGCGGCAACACAGCATCGATAATATCAAACTCCC
GAAACGTCAGCCCGAAGAAAAAGAATTACAAAAAAAAACCCGTTGGTGGTCGGTTGACGA
TAAAACTGAACAGAATTAGGCAAACACACACCATCTGTACATACGCGATACCATTGTCAC
AACAAGTCAGTGCACGTCCTCTTTAATGTAGGGAAATTGATGGATTAGATGGAGAACAGC
CAAGCATCAAAAGTCAAACGCGAAACTATCTTAGTTCATTTGAGCCGATACTGTACATTT
TGCGAGCGAGAACAGGTTTAGGAAAACGTGTGTAAGTAATCGAACACCGAAACGATTCGT
CCCTAGCCACGGTAACTTTTTCCTCCGTCACCTTTGGAGTGGCCGCTGAAGTTGACGGGA
GATTGCCGTTTCCTCCCAAGGTACAGCTTAACGTTGCTTTCGGTCGGTGTGCGAATCTAC
ACGTCTTTTTTGGATTGTTGTGAGTAATAATGTAAGTAGCGATGTACAGAGTTGCAAAAT
AGTACTGTAAAAGGATGTTCTAGATCGGTGCGATACATTTTACTCGATGCACTAGATATA
GATATAAAATTGTTCGTAATAAGTGTAATAAATAAGGGATTCGAATTTGAAATCTAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTTAAAA

consensusID : consensus_9238#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 471
fasta sequence

                              [CGAGCAAGAGCCAGCAGCAAATTCAAAACGTTGAGCCGGAAATCACCGAGTGCAGCTAAATATATGGGTGCCAACATCAGGCTCCAGCTGGGCGGCAACACAGCATCGATAATATCAAACTCCCGAAACGTCAGCCCGAAGAAAAAGAATCACAAAAAAAAACCCGTAGGTGGTCGGTGGACGATAAAACTGAACAGAATAAGGCAAACACACACCATCTGTACATACGCGATACCATAGTCACAACAAGTCAGGGCACGTCCTCTGAAAGGTAGGGAAATCGATGGATCAGATGGAGAACAGCCAAGCATCAAAAGTCAAACGCGAAACTATCTAAGTCATGGGAGCCGAAACTGTACATGAGGCGAGCGAGAACAGGTCAAGGAAAACGTGGGTAAGTAATCGAACACCGAAACGATGCGGCCCTAGCCACGGTAACGTCACCCCCCGGCACCTCCGGAGGGGCCGCCG]

[+] EMBL BX613559             [CGAGCAAGAGCCAGCAGCAAATTCAAAACGTTGAGCCGGAAATCACCGAGTGCAGCTAAATATATGGGTGCCAACATCAGGCTCCAGCTGGGCGGCAACACAGCATCGATAATATCAAACTCCCGAAACGTCAGCCCGAAGAAAAAGAATCACAAAAAAAAACCCGTAGGTGGTCGGTGGACGATAAAACTGAACAGAATAAGGCAAACACACACCATCTGTACATACGCGATACCATAGTCACAACAAGTCAGGGCACGTCCTCTGAAAGGTAGGGAAATCGATGGATCAGATGGAGAACAGCCAAGCATCAAAAGTCAAACGCGAAACTATCTAAGTCATGGGAGCCGAAACTGTACATGAGGCGAGCGAGAACAGGTCAAGGAAAACGTGGGTAAGTAATCGAACACCGAAACGATGCGGCCCTAGCCACGGTAACGTCACCCCCCGGCACCTCCGGAGGGGCCGCCG]




>consensus_9238#1
CGAGCAAGAGCCAGCAGCAAATTCAAAACGTTGAGCCGGAAATCACCGAGTGCAGCTAAA
TATATGGGTGCCAACATCAGGCTCCAGCTGGGCGGCAACACAGCATCGATAATATCAAAC
TCCCGAAACGTCAGCCCGAAGAAAAAGAATCACAAAAAAAAACCCGTAGGTGGTCGGTGG
ACGATAAAACTGAACAGAATAAGGCAAACACACACCATCTGTACATACGCGATACCATAG
TCACAACAAGTCAGGGCACGTCCTCTGAAAGGTAGGGAAATCGATGGATCAGATGGAGAA
CAGCCAAGCATCAAAAGTCAAACGCGAAACTATCTAAGTCATGGGAGCCGAAACTGTACA
TGAGGCGAGCGAGAACAGGTCAAGGAAAACGTGGGTAAGTAATCGAACACCGAAACGATG
CGGCCCTAGCCACGGTAACGTCACCCCCCGGCACCTCCGGAGGGGCCGCCG

consensusID : consensus_9238#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 160
fasta sequence

                              [CCTGATCGTCAATCGTCCGCATCCGCGNGGNCTGCTGATCACGTTCATCGAGCTGATCACAAATCCGATCTACAAGTTCTGGGANCACNATTTCGGGCACTGTGCNCCATAAATTGAACGACTTTTCCAATCGGTGGCAAANTCGTGCTTGGTCACNAGC]

[+] EMBL BX625624             [CCTGATCGTCAATCGTCCGCATCCGCGNGGNCTGCTGATCACGTTCATCGAGCTGATCACAAATCCGATCTACAAGTTCTGGGANCACNATTTCGGGCACTGTGCNCCATAAATTGAACGACTTTTCCAATCGGTGGCAAANTCGTGCTTGGTCACNAGC]




>consensus_9238#2
CCTGATCGTCAATCGTCCGCATCCGCGNGGNCTGCTGATCACGTTCATCGAGCTGATCAC
AAATCCGATCTACAAGTTCTGGGANCACNATTTCGGGCACTGTGCNCCATAAATTGAACG
ACTTTTCCAATCGGTGGCAAANTCGTGCTTGGTCACNAGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9238#0      CCGCTTCTTCCGCTTCGCCACGCAGTACTGCATCGATCTGACGTATCGCAACATGAACGA 60
consensus_9238#1      ------------------------------------------------------------
consensus_9238#2      ------------------------------------------------------------
                                                                                  

consensus_9238#0      GCCGAACGCGAAAACGAAAATCTTCCAGTTTATCGACGCGTACGTTCGGCTGATTGCGCT 120
consensus_9238#1      ------------------------------------------------------------
consensus_9238#2      ------------------------------------------------------------
                                                                                  

consensus_9238#0      GCTGGTAAAGCACTCCGGTGAGAGTGGCAGCACCAACACGAAGCTGAATCTGCTGAATAA 180
consensus_9238#1      ------------------------------------------------------------
consensus_9238#2      ------------------------------------------------------------
                                                                                  

consensus_9238#0      GATTCTCGGTATCATCATCGGCATACTGCTGCACGATCAGGAGGTCCACACGACCGCGTT 240
consensus_9238#1      ------------------------------------------------------------
consensus_9238#2      ------------------------------------------------------------
                                                                                  

consensus_9238#0      CCAGCAGGTCGGCTACCATCGCATCTTCGCCATGCTCTTCCTCGAGCTGACCACGCACGA 300
consensus_9238#1      ------------------------------------------------------------
consensus_9238#2      ------------------------------------------------------------
                                                                                  

consensus_9238#0      TCCGATCCTGGAGAACATCAGCATCAGCGTGATCACGGCGTTCTGCCACACGTTCCACAT 360
consensus_9238#1      ------------------------------------------------------------
consensus_9238#2      ------------------------------------------------------------
                                                                                  

consensus_9238#0      ACTGCGCCCGTCCGCGGCGCCCGGCTTCTGCTACTCCTGGCTTGAGCTGATCGCGCACCG 420
consensus_9238#1      ------------------------------------------------------------
consensus_9238#2      ------------------------------------------------------------
                                                                                  

consensus_9238#0      CGTCTTCATCGGGCGCGTGCTCGCCCAGATCCCGCAGCAGAAGGGCTGGCACATGTACTC 480
consensus_9238#1      ------------------------------------------------------------
consensus_9238#2      ------------------------------------------------------------
                                                                                  

consensus_9238#0      GCAGCTCCTGATCGACCTGTTCAAGTATCTGGCCCCGTTCCTGCGCAATGCCGAGCTGGC 540
consensus_9238#1      ------------------------------------------------------------
consensus_9238#2      ------------------------------------------------------------
                                                                                  

consensus_9238#0      CAAGCCGGTGCAGCATCTGTACAAGGGTACGCTGCGCGTGCTGCTCGTGCTGCTGCACGA 600
consensus_9238#1      ------------------------------------------------------------
consensus_9238#2      ------------------------------------------------------------
                                                                                  

consensus_9238#0      TTTTCCCGAGTTTTTGTGCGACTACCATTTCGCGTTCTGCGACGTCATCCCGTCAAACTG 660
consensus_9238#1      ------------------------------------------------------------
consensus_9238#2      ------------------------------------------------------------
                                                                                  

consensus_9238#0      CATCCAGATGCGCAACCTGATCCTGTCGCCGTACCCGCGCAACATGCGCCTGCCCGATCC 720
consensus_9238#1      ------------------------------------------------------------
consensus_9238#2      ------------------------------------------------------------
                                                                                  

consensus_9238#0      GTTCACGCCGAACCTGAANGTCGATATGCTGAATGATATTGGAGGATCGCCACGGATTTC 780
consensus_9238#1      ------------------------------------------------------------
consensus_9238#2      ------------------------------------------------------------
                                                                                  

consensus_9238#0      CATCAACTACGCGTCCTCCATNNAGCCGGTAAGCTTCAAGAAGGATCTCGACTCGTACCT 840
consensus_9238#1      ------------------------------------------------------------
consensus_9238#2      ------------------------------------------------------------
                                                                                  

consensus_9238#0      GAAGGCCCGCGCACCGGTCACCTTCCTGTCGGAGTTGCGCTCCAATCTGCAGATCTCGAA 900
consensus_9238#1      ------------------------------------------------------------
consensus_9238#2      ------------------------------------------------------------
                                                                                  

consensus_9238#0      CGAGGTCGGCTCGCGCTACAATATTCCGCTGATGAACGCGCTGGTGCTGTACGTTGGCAC 960
consensus_9238#1      ------------------------------------------------------------
consensus_9238#2      ------------------------------------------------------------
                                                                                  

consensus_9238#0      CCAAGCAATTGCTCATATTCGATCGAAAAATTTGGGCCCAACAATGTCCACGATCATACA 1020
consensus_9238#1      ------------------------------------------------------------
consensus_9238#2      ------------------------------------------------------------
                                                                                  

consensus_9238#0      CAGCGCGCACATGGATATCTTCCAAAACCTGGCGGTCGATCTGGACACGGAGGGACGCTA 1080
consensus_9238#1      ------------------------------------------------------------
consensus_9238#2      ------------------------------------------------------------
                                                                                  

consensus_9238#0      CCTGTTCCTGAACGCGATCGCCAACCAGCTGCGCTATCCGAACAGCCACACGCACTACTT 1140
consensus_9238#1      ------------------------------------------------------------
consensus_9238#2      ------------------------------------------------------------
                                                                                  

consensus_9238#0      CAGCTGCTGCATACTGTACCTGTTCGCAGAGGCAAATTCGGAAGCCATTCAGGAACAAAT 1200
consensus_9238#1      ------------------------------------------------------------
consensus_9238#2      ------------------------------------------------------------
                                                                                  

consensus_9238#0      CACGCGCGTTTTGCTCGAGCGCCTGATCGTCAATCGTCCGCATCCGTGGGGTCTGCTGAT 1260
consensus_9238#1      ------------------------------------------------------------
consensus_9238#2      ------------------------------------------------------------
                                                                                  

consensus_9238#0      CACGTTCATCGAGCTGATCAAAAATCCGATCTACAAGTTCTGGGATCACGATTTCGTGCA 1320
consensus_9238#1      ------------------------------------------------------------
consensus_9238#2      ------------------------------------------------------------
                                                                                  

consensus_9238#0      CTGTGCGCCAGAAATTGAACGACTTTTCGAATCGGTGGCAAAGTCGTGCATGGTCACGAG 1380
consensus_9238#1      --------------------------------------------------------CGAG 4
consensus_9238#2      ------------------------------------------------------------
                                                                                  

consensus_9238#0      CAAGAGCCAGCAGCAAATTCAAAACGTTGAGCCGGATATCACCGAGTGCAGCTAAATATA 1440
consensus_9238#1      CAAGAGCCAGCAGCAAATTCAAAACGTTGAGCCGGAAATCACCGAGTGCAGCTAAATATA 64
consensus_9238#2      -------------------------------CCTGA--TCGTCAATCGT--CCGCATCCG 25
                                                     ** **  **  * *  *   *   **   

consensus_9238#0      TGGTTGCCAAC-ATCAGGCTCCAGCTTTGCGGCAACACAGCATCGATAATATCAAACTCC 1499
consensus_9238#1      TGGGTGCCAAC-ATCAGGCTCCAGCTGGGCGGCAACACAGCATCGATAATATCAAACTCC 123
consensus_9238#2      CGNGGNCTGCTGATCACGTTC--ATCGAGCTG-ATCACAAATCCGAT--CTACAAGTTCT 80
                       *    *     **** * **       ** * * ****    ****     ***  ** 

consensus_9238#0      CGAAACGTCAGCCCGAAGAAAAAGAATTACAAAAAAAAACCCGTTGGTGGTCGGTTGACG 1559
consensus_9238#1      CGAAACGTCAGCCCGAAGAAAAAGAATCACAAAAAAAAACCCGTAGGTGGTCGGTGGACG 183
consensus_9238#2      GGGANCACNATTTCGGGCACTGTGCNCCATAAATTGAACGACTTTTCCAATCGGTGG--- 137
                       * * *   *   **   *    *    * ***   **   * *      ***** *   

consensus_9238#0      ATAAAACTGAACAGAATTAGGCAAACACACACCATCTGTACATACGCGATACCATTGTCA 1619
consensus_9238#1      ATAAAACTGAACAGAATAAGGCAAACACACACCATCTGTACATACGCGATACCATAGTCA 243
consensus_9238#2      -CAAANTCGTGCTTGGTCA--CNAGC---------------------------------- 160
                        ***   *  *    * *  * * *                                  

consensus_9238#0      CAACAAGTCAGTGCACGTCCTCTTTAATGTAGGGAAATTGATGGATTAGATGGAGAACAG 1679
consensus_9238#1      CAACAAGTCAGGGCACGTCCTCTGAAAGGTAGGGAAATCGATGGATCAGATGGAGAACAG 303
consensus_9238#2      ------------------------------------------------------------
                                                                                  

consensus_9238#0      CCAAGCATCAAAAGTCAAACGCGAAACTATCTTAGTTCATTTGAGCCGATACTGTACATT 1739
consensus_9238#1      CCAAGCATCAAAAGTCAAACGCGAAACTATCTAAGT-CATGGGAGCCGAAACTGTACATG 362
consensus_9238#2      ------------------------------------------------------------
                                                                                  

consensus_9238#0      TTGCGAGCGAGAACAGGTTTAGGAAAACGTGTGTAAGTAATCGAACACCGAAACGATTCG 1799
consensus_9238#1      AGGCGAGCGAGAACAGGTCAAGGAAAACGTGGGTAAGTAATCGAACACCGAAACGATGCG 422
consensus_9238#2      ------------------------------------------------------------
                                                                                  

consensus_9238#0      TCCCTAGCCACGGTAACTTTTTCCTCCGTCACCTTTGGAGTGGCCGCTGAAGTTGACGGG 1859
consensus_9238#1      GCCCTAGCCACGGTAACGTCACCCCCCGGCACCTCCGGAGGGGCCGCCG----------- 471
consensus_9238#2      ------------------------------------------------------------
                                                                                  

consensus_9238#0      AGATTGCCGTTTCCTCCCAAGGTACAGCTTAACGTTGCTTTCGGTCGGTGTGCGAATCTA 1919
consensus_9238#1      ------------------------------------------------------------
consensus_9238#2      ------------------------------------------------------------
                                                                                  

consensus_9238#0      CACGTCTTTTTTGGATTGTTGTGAGTAATAATGTAAGTAGCGATGTACAGAGTTGCAAAA 1979
consensus_9238#1      ------------------------------------------------------------
consensus_9238#2      ------------------------------------------------------------
                                                                                  

consensus_9238#0      TAGTACTGTAAAAGGATGTTCTAGATCGGTGCGATACATTTTACTCGATGCACTAGATAT 2039
consensus_9238#1      ------------------------------------------------------------
consensus_9238#2      ------------------------------------------------------------
                                                                                  

consensus_9238#0      AGATATAAAATTGTTCGTAATAAGTGTAATAAATAAGGGATTCGAATTTGAAATCTAAAA 2099
consensus_9238#1      ------------------------------------------------------------
consensus_9238#2      ------------------------------------------------------------
                                                                                  

consensus_9238#0      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTTAAAA 2143
consensus_9238#1      --------------------------------------------
consensus_9238#2      --------------------------------------------