cluster # 929

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Anopheles gambiae
cluster # 929 cluster # 929 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_929#0 length = 625 sequences # 1

consensus_929#1 length = 600 sequences # 1

consensusID : consensus_929#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 625
fasta sequence

                              [CCGCCCACGCGTCCGCGCAGCGCTGGCATATCGCTGGCCGTCGCCAGCTCGAGCTGTGCGTACGTCGCGCTCGAGCGGAACAATCTCAAAGAGGCGGCCAACATTGCCGCACGCTACCGGGCGTTCTATTCGCCCGGCATCTACCGCAAACCGCTGGCGCAAGCGCTGCTGCAGTCGCGCGACGTCGACTCGTACGTGCGGTTCGCGCGTGCCATGCACGATGGTTTGGTGCGTAACCGGTCCGGAGAGGAGGAAAGCGAGCCGGTTGCGGAGGGGGAAAGCAACGGAAACAGCACGGAAGCGGTGCAGGCCGAAACGATGGGCAACTTGATTTACGACGCGGTGGGTGCGTTCAAAACCGATCGGGTCGAGATGGTGCGCAAGATACTGACCGGGTTCGTCAATCAGGGGCTTTCGATTAGCAACGGATTGGCGGAAAAGATCCAGGAGCGAATGGGCAGCGAAATGACGGCCGACATCTCGAGCATGCTGTCGAAGCTGGCGGCGGGCGATTTGGAACCGATCGAGCTTGAACGGAAGCCGGCCCAGGGTCAGCAGCGGCAAAAGACACCGATCGCCAGTCTGTCCGTGCCGCAGCTTGAGCGGCTGGTGGCGGATCTGGAGG]

[+] EMBL BM597521             [CCGCCCACGCGTCCGCGCAGCGCTGGCATATCGCTGGCCGTCGCCAGCTCGAGCTGTGCGTACGTCGCGCTCGAGCGGAACAATCTCAAAGAGGCGGCCAACATTGCCGCACGCTACCGGGCGTTCTATTCGCCCGGCATCTACCGCAAACCGCTGGCGCAAGCGCTGCTGCAGTCGCGCGACGTCGACTCGTACGTGCGGTTCGCGCGTGCCATGCACGATGGTTTGGTGCGTAACCGGTCCGGAGAGGAGGAAAGCGAGCCGGTTGCGGAGGGGGAAAGCAACGGAAACAGCACGGAAGCGGTGCAGGCCGAAACGATGGGCAACTTGATTTACGACGCGGTGGGTGCGTTCAAAACCGATCGGGTCGAGATGGTGCGCAAGATACTGACCGGGTTCGTCAATCAGGGGCTTTCGATTAGCAACGGATTGGCGGAAAAGATCCAGGAGCGAATGGGCAGCGAAATGACGGCCGACATCTCGAGCATGCTGTCGAAGCTGGCGGCGGGCGATTTGGAACCGATCGAGCTTGAACGGAAGCCGGCCCAGGGTCAGCAGCGGCAAAAGACACCGATCGCCAGTCTGTCCGTGCCGCAGCTTGAGCGGCTGGTGGCGGATCTGGAGG]




>consensus_929#0
CCGCCCACGCGTCCGCGCAGCGCTGGCATATCGCTGGCCGTCGCCAGCTCGAGCTGTGCG
TACGTCGCGCTCGAGCGGAACAATCTCAAAGAGGCGGCCAACATTGCCGCACGCTACCGG
GCGTTCTATTCGCCCGGCATCTACCGCAAACCGCTGGCGCAAGCGCTGCTGCAGTCGCGC
GACGTCGACTCGTACGTGCGGTTCGCGCGTGCCATGCACGATGGTTTGGTGCGTAACCGG
TCCGGAGAGGAGGAAAGCGAGCCGGTTGCGGAGGGGGAAAGCAACGGAAACAGCACGGAA
GCGGTGCAGGCCGAAACGATGGGCAACTTGATTTACGACGCGGTGGGTGCGTTCAAAACC
GATCGGGTCGAGATGGTGCGCAAGATACTGACCGGGTTCGTCAATCAGGGGCTTTCGATT
AGCAACGGATTGGCGGAAAAGATCCAGGAGCGAATGGGCAGCGAAATGACGGCCGACATC
TCGAGCATGCTGTCGAAGCTGGCGGCGGGCGATTTGGAACCGATCGAGCTTGAACGGAAG
CCGGCCCAGGGTCAGCAGCGGCAAAAGACACCGATCGCCAGTCTGTCCGTGCCGCAGCTT
GAGCGGCTGGTGGCGGATCTGGAGG

consensusID : consensus_929#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 600
fasta sequence

                              [CCGGGACGGTGGTATGAACGATCGGGCCTACCTGATCGCCCTCGAGGCGGCACTGAAGGGCGGCGAGGTTGAGCTAAGCTTTGCCCTGCTGGAGGAGCTGGTGAAGCAGAATCAACCGATCCGGCAGCACTTTTTCTGGCCGCTGATGTGCGCAAACGACCCCAAGTGGACGAAGGAGGAGCGCACCGAGCGTGTGCTGAACGTGCTGCGCTCAATGGCGGAAAAGTTCAAGCTCTACCCGAGCGGCGAGACGGTGCGCGAGTATGCCGTGCCGAATCTGCCGGTCAGCAACAGCGAGATCGTGATACAGCTGCTGCGCAGCGCTGGCATATCGCTGGCCGTCGCCAGCTCGAGCTGTGCGTACGTCGCGCTCGAGCGGAACAATCTCAAAGAGGCGGCCAACATTGCCGCACGCCTACCGGGCGTTCTATTCGCCCGGCATCTACCGGCAAACCGCTGGCGCAAGCGGCTGCTGCAGTCGCGCGACGTCGACTCGTACGTGCGGGTTCGCGCGTGCCATGCACCGAATGGTTTGGTGCGTAACCGGTCCCGGAGAGGAGGAAAGCGAGCCGGGTTGCGGAGGGGGAAAGCAACGGAAAC]

[+] EMBL BM589681             [CCGGGACGGTGGTATGAACGATCGGGCCTACCTGATCGCCCTCGAGGCGGCACTGAAGGGCGGCGAGGTTGAGCTAAGCTTTGCCCTGCTGGAGGAGCTGGTGAAGCAGAATCAACCGATCCGGCAGCACTTTTTCTGGCCGCTGATGTGCGCAAACGACCCCAAGTGGACGAAGGAGGAGCGCACCGAGCGTGTGCTGAACGTGCTGCGCTCAATGGCGGAAAAGTTCAAGCTCTACCCGAGCGGCGAGACGGTGCGCGAGTATGCCGTGCCGAATCTGCCGGTCAGCAACAGCGAGATCGTGATACAGCTGCTGCGCAGCGCTGGCATATCGCTGGCCGTCGCCAGCTCGAGCTGTGCGTACGTCGCGCTCGAGCGGAACAATCTCAAAGAGGCGGCCAACATTGCCGCACGCCTACCGGGCGTTCTATTCGCCCGGCATCTACCGGCAAACCGCTGGCGCAAGCGGCTGCTGCAGTCGCGCGACGTCGACTCGTACGTGCGGGTTCGCGCGTGCCATGCACCGAATGGTTTGGTGCGTAACCGGTCCCGGAGAGGAGGAAAGCGAGCCGGGTTGCGGAGGGGGAAAGCAACGGAAAC]




>consensus_929#1
CCGGGACGGTGGTATGAACGATCGGGCCTACCTGATCGCCCTCGAGGCGGCACTGAAGGG
CGGCGAGGTTGAGCTAAGCTTTGCCCTGCTGGAGGAGCTGGTGAAGCAGAATCAACCGAT
CCGGCAGCACTTTTTCTGGCCGCTGATGTGCGCAAACGACCCCAAGTGGACGAAGGAGGA
GCGCACCGAGCGTGTGCTGAACGTGCTGCGCTCAATGGCGGAAAAGTTCAAGCTCTACCC
GAGCGGCGAGACGGTGCGCGAGTATGCCGTGCCGAATCTGCCGGTCAGCAACAGCGAGAT
CGTGATACAGCTGCTGCGCAGCGCTGGCATATCGCTGGCCGTCGCCAGCTCGAGCTGTGC
GTACGTCGCGCTCGAGCGGAACAATCTCAAAGAGGCGGCCAACATTGCCGCACGCCTACC
GGGCGTTCTATTCGCCCGGCATCTACCGGCAAACCGCTGGCGCAAGCGGCTGCTGCAGTC
GCGCGACGTCGACTCGTACGTGCGGGTTCGCGCGTGCCATGCACCGAATGGTTTGGTGCG
TAACCGGTCCCGGAGAGGAGGAAAGCGAGCCGGGTTGCGGAGGGGGAAAGCAACGGAAAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_929#0      CCGCCCACGCGTCCGCGC-AGCGCTGGCATATCGCTGGCCGTCGCCAGCTCGAGCTGTGC 59
consensus_929#1      ---CCGGGACGGTGGTATGAACGATCGGGCCTACCTGATCGCCCTCGAGGCGGCACTGAA 57
                        **    **   *    * ** * *    *  ***  ** *  *    **        

consensus_929#0      GTACGTCGCGCTCGAGCGGAACAAT------CTCAAAGAGGCGGCCAA-CATTGCCGCAC 112
consensus_929#1      GGGCGGCGAGGTTGAGCTAAGCTTTGCCCTGCTGGAGGAGCTGGTGAAGCAGAATCAACC 117
                     *  ** ** * * ****  * *  *      **  * ***  **  ** **    *   *

consensus_929#0      GCTACCG-GGCGTTCTATTCGCCCGGCATCTACCGCAAACCGCTGGCGCAAGCGC-TGCT 170
consensus_929#1      GATCCGGCAGCACTTTTTCTGGCCGCTGATGTGCGCAAACGAC---CCCAAGTGGACGAA 174
                     * * * *  **  * * *  * ***        *******  *   * **** *   *  

consensus_929#0      GCAGTCGCGCGACGTCGACTCGTACGTGCGGTTCGCGCGTGCCATGCACGATGGTTTGGT 230
consensus_929#1      GGAGGAGCGCACCG--AGCGTGTGCTGAACGTGC-TGCGCTCAATGGCGGAAAAGTTCAA 231
                     * **  ****  **    *  ** *     ** *  ***  * ***   **    **   

consensus_929#0      GCGTAACCGGTCCGGAGAGGAGGAAAGCGAGCCGGTTGCGGAGGGGGAAAGCAACGGAAA 290
consensus_929#1      GCTCTACCCGAGCGGCGAGACGGTGCGCGAGTATGCCGTGCCGAATCTGCCGGTCAGCAA 291
                     **   *** *  *** ***  **   *****   *  * *  *           * * **

consensus_929#0      CAGCACGGAAGCGGTGCAGGC----CGAAACGATGGGCAACT--TGATTTACGACGCGGT 344
consensus_929#1      CAGCGAGATCGTGATACAGCTGCTGCGCAGCGCTGGCATATCGCTGGCCGTCGCCAGCTC 351
                     ****  *   * * * ***      ** * ** ***   *    **     ** *     

consensus_929#0      GGG-TGCGTTCAAAACCGATCGGGTCGAGATGGTGCGCAAGATACTGACCGGGTT--CGT 401
consensus_929#1      GAGCTGTGCGTACGTCGCGCTCGAGCGGAACAATCTCAAAGAGGCGGCCAACATTGCCGC 411
                     * * ** *   *   *      *  **  *   *    ****  * * *    **  ** 

consensus_929#0      CAATCAG--GGGCTTTCGATTAGCAACGGATTGGCGGAAAAGATCCAGGAGCGAATGGGC 459
consensus_929#1      ACGCCTACCGGGCGTTCTATTCGCCCGGCATCTACCGGCAAACCGCTGGCGCAAGCGGCT 471
                         *    **** *** *** **   * **   * *  **    * ** ** *  **  

consensus_929#0      AGCGAAATGACG-GCCGACATCTCGAGCATGCTGTCGAAGCTGGCGGCGGGCGATTTGGA 518
consensus_929#1      GCTGCAGTCGCGCGACGTCGACTCGTACGTGCGG-----GTTCGCG-CGTGCCAT---GC 522
                        * * *  ** * ** *  ****  * *** *     * * *** ** ** **   * 

consensus_929#0      ACCGATCGAGCTTGAACGGAAGCCGGCCCAGGGTCAGCAGCGGCAAAAGACACCGATCGC 578
consensus_929#1      ACCGAATG-GTTTGGTGCGTAACCGGTCCCGG---AGAGGAGGAAAGCGAGCCGGGTTGC 578
                     *****  * * ***    * * **** ** **   **  * ** **  **  * * * **

consensus_929#0      C-AGTCTGTCCGTGCCGCAGCTTGAGCGGCTGGTGGCGGATCTGGAGG 625
consensus_929#1      GGAGGGGGAAAGCAACGGAAAC-------------------------- 600
                       **   *   *   ** *