cluster # 932

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Anopheles gambiae
cluster # 932 cluster # 932 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_932#0 length = 596 sequences # 1

consensus_932#1 length = 424 sequences # 1

consensusID : consensus_932#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 596
fasta sequence

                              [ATCCCCCGAGGTTATATATCGCTAATATAATCTTAATACAATAGCAGCGTTAATAGTAGTTTACACGAGCATGCGAACGACGGTGCGGTGGTGAACAAGAACGGTGCCACCGGCGGCAGCGACAGTGGCGCCGAGNGACGACCAGCAAACAATGGCGCTGCGGTACGAGCAGATGCAGAAAACCTGTCGATCAGTATAAGACTATCATAGCCTGACACGGAAAACATGCTGAAAAACCTCGAAGCGAAGGTGATCTGAGCAGGACATCCACTGGCGCACTNGTGGTGCAGGCGAAGTGATAAGGAGCTAACCCTGCTCAAATCAGCCGGTGCCTGTCGGGCAGTAGTAGGATGGGTGGCTGGCTGGACGGTAACCAACCATCAGCAAGGTCCGTGAAACAAAGTGTGTGTCTCCGAACCACCACCACACACCATTCATCACCCTCAACACCAACACACGAATGTTGTTCCGAACGCTGTTCAACAACCTCTCTCCTCTCGGTGCGCAAGGACATATACGCACACACACACACACATCCCCTTTGCAGGTTGGGGACGATCAAACGAATCGGAACAGCCAAGCAAGTGTGATGCAAC]

[+] EMBL AL931654             [ATCCCCCGAGGTTATATATCGCTAATATAATCTTAATACAATAGCAGCGTTAATAGTAGTTTACACGAGCATGCGAACGACGGTGCGGTGGTGAACAAGAACGGTGCCACCGGCGGCAGCGACAGTGGCGCCGAGNGACGACCAGCAAACAATGGCGCTGCGGTACGAGCAGATGCAGAAAACCTGTCGATCAGTATAAGACTATCATAGCCTGACACGGAAAACATGCTGAAAAACCTCGAAGCGAAGGTGATCTGAGCAGGACATCCACTGGCGCACTNGTGGTGCAGGCGAAGTGATAAGGAGCTAACCCTGCTCAAATCAGCCGGTGCCTGTCGGGCAGTAGTAGGATGGGTGGCTGGCTGGACGGTAACCAACCATCAGCAAGGTCCGTGAAACAAAGTGTGTGTCTCCGAACCACCACCACACACCATTCATCACCCTCAACACCAACACACGAATGTTGTTCCGAACGCTGTTCAACAACCTCTCTCCTCTCGGTGCGCAAGGACATATACGCACACACACACACACATCCCCTTTGCAGGTTGGGGACGATCAAACGAATCGGAACAGCCAAGCAAGTGTGATGCAAC]




>consensus_932#0
ATCCCCCGAGGTTATATATCGCTAATATAATCTTAATACAATAGCAGCGTTAATAGTAGT
TTACACGAGCATGCGAACGACGGTGCGGTGGTGAACAAGAACGGTGCCACCGGCGGCAGC
GACAGTGGCGCCGAGNGACGACCAGCAAACAATGGCGCTGCGGTACGAGCAGATGCAGAA
AACCTGTCGATCAGTATAAGACTATCATAGCCTGACACGGAAAACATGCTGAAAAACCTC
GAAGCGAAGGTGATCTGAGCAGGACATCCACTGGCGCACTNGTGGTGCAGGCGAAGTGAT
AAGGAGCTAACCCTGCTCAAATCAGCCGGTGCCTGTCGGGCAGTAGTAGGATGGGTGGCT
GGCTGGACGGTAACCAACCATCAGCAAGGTCCGTGAAACAAAGTGTGTGTCTCCGAACCA
CCACCACACACCATTCATCACCCTCAACACCAACACACGAATGTTGTTCCGAACGCTGTT
CAACAACCTCTCTCCTCTCGGTGCGCAAGGACATATACGCACACACACACACACATCCCC
TTTGCAGGTTGGGGACGATCAAACGAATCGGAACAGCCAAGCAAGTGTGATGCAAC

consensusID : consensus_932#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 424
fasta sequence

                              [ACAGCAACAACAGTGACAGCAGCAGTAGGCTTAACAGTAGCAGCAATATAATCGCTAATAATAATCTTAATACCAATAGCAGCGTTAATAGTAGTTTACACGAGCATGCGAACGACGGTGCGGTGGTGAACAAGAACGGTGCCACCGGCGGCAGCGACAGTGGCGCCGAGGACGACCAGCAAACAATGGCGCTGCGGTACGAGCAGATGCAGAAAACCGTCGATCAGTATAAGACTATCATAGCCGACACGGAAAACATGCTGAAAAACCTCGAAGCGAAGGTGATCGAGCAGGACATCCACTGGCGCACGGTGGTGCAGGCGAAGGATAAGGAGCTAACCCTGCTCAAATCAGCCGGTGCCGTCGGGCAGTAGTAGGATGGGTGGCGGCGGACGGTAACCAACCATCAGCAAGGTCCGTGAAA]

[-] EMBL AGA282058            [ACAGCAACAACAGTGACAGCAGCAGTAGGCTTAACAGTAGCAGCAATATAATCGCTAATAATAATCTTAATACCAATAGCAGCGTTAATAGTAGTTTACACGAGCATGCGAACGACGGTGCGGTGGTGAACAAGAACGGTGCCACCGGCGGCAGCGACAGTGGCGCCGAGGACGACCAGCAAACAATGGCGCTGCGGTACGAGCAGATGCAGAAAACCGTCGATCAGTATAAGACTATCATAGCCGACACGGAAAACATGCTGAAAAACCTCGAAGCGAAGGTGATCGAGCAGGACATCCACTGGCGCACGGTGGTGCAGGCGAAGGATAAGGAGCTAACCCTGCTCAAATCAGCCGGTGCCGTCGGGCAGTAGTAGGATGGGTGGCGGCGGACGGTAACCAACCATCAGCAAGGTCCGTGAAA]




>consensus_932#1
ACAGCAACAACAGTGACAGCAGCAGTAGGCTTAACAGTAGCAGCAATATAATCGCTAATA
ATAATCTTAATACCAATAGCAGCGTTAATAGTAGTTTACACGAGCATGCGAACGACGGTG
CGGTGGTGAACAAGAACGGTGCCACCGGCGGCAGCGACAGTGGCGCCGAGGACGACCAGC
AAACAATGGCGCTGCGGTACGAGCAGATGCAGAAAACCGTCGATCAGTATAAGACTATCA
TAGCCGACACGGAAAACATGCTGAAAAACCTCGAAGCGAAGGTGATCGAGCAGGACATCC
ACTGGCGCACGGTGGTGCAGGCGAAGGATAAGGAGCTAACCCTGCTCAAATCAGCCGGTG
CCGTCGGGCAGTAGTAGGATGGGTGGCGGCGGACGGTAACCAACCATCAGCAAGGTCCGT
GAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_932#0      --------------------------------ATCCCCCGAGGTTATATA-TCGCTAATA 27
consensus_932#1      ACAGCAACAACAGTGACAGCAGCAGTAGGCTTAACAGTAGCAGCAATATAATCGCTAATA 60
                                                     * *    *  *  ***** *********

consensus_932#0      -TAATCTTAATAC-AATAGCAGCGTTAATAGTAGTTTACACGAGCATGCGAACGACGGTG 85
consensus_932#1      ATAATCTTAATACCAATAGCAGCGTTAATAGTAGTTTACACGAGCATGCGAACGACGGTG 120
                      ************ **********************************************

consensus_932#0      CGGTGGTGAACAAGAACGGTGCCACCGGCGGCAGCGACAGTGGCGCCGAGNGACGACCAG 145
consensus_932#1      CGGTGGTGAACAAGAACGGTGCCACCGGCGGCAGCGACAGTGGCGCCGAGG-ACGACCAG 179
                     **************************************************  ********

consensus_932#0      CAAACAATGGCGCTGCGGTACGAGCAGATGCAGAAAACCTGTCGATCAGTATAAGACTAT 205
consensus_932#1      CAAACAATGGCGCTGCGGTACGAGCAGATGCAGAAAACC-GTCGATCAGTATAAGACTAT 238
                     *************************************** ********************

consensus_932#0      CATAGCCTGACACGGAAAACATGCTGAAAAACCTCGAAGCGAAGGTGATCTGAGCAGGAC 265
consensus_932#1      CATAGCC-GACACGGAAAACATGCTGAAAAACCTCGAAGCGAAGGTGATC-GAGCAGGAC 296
                     ******* ****************************************** *********

consensus_932#0      ATCCACTGGCGCACTNGTGGTGCAGGCGAAGTGATAAGGAGCTAACCCTGCTCAAATCAG 325
consensus_932#1      ATCCACTGGCGCAC-GGTGGTGCAGGCGAAG-GATAAGGAGCTAACCCTGCTCAAATCAG 354
                     **************  *************** ****************************

consensus_932#0      CCGGTGCCTGTCGGGCAGTAGTAGGATGGGTGGCTGGCTGGACGGTAACCAACCATCAGC 385
consensus_932#1      CCGGTGCC-GTCGGGCAGTAGTAGGATGGGTGGC--GGCGGACGGTAACCAACCATCAGC 411
                     ******** *************************  *  *********************

consensus_932#0      AAGGTCCGTGAAACAAAGTGTGTGTCTCCGAACCACCACCACACACCATTCATCACCCTC 445
consensus_932#1      AAGGTCCGTGAAA----------------------------------------------- 424
                     *************                                               

consensus_932#0      AACACCAACACACGAATGTTGTTCCGAACGCTGTTCAACAACCTCTCTCCTCTCGGTGCG 505
consensus_932#1      ------------------------------------------------------------
                                                                                 

consensus_932#0      CAAGGACATATACGCACACACACACACACATCCCCTTTGCAGGTTGGGGACGATCAAACG 565
consensus_932#1      ------------------------------------------------------------
                                                                                 

consensus_932#0      AATCGGAACAGCCAAGCAAGTGTGATGCAAC 596
consensus_932#1      -------------------------------